RNA–Protein interactions for RNA: ENST00000249910.5

MBD4-201, Transcript of methyl-CpG binding domain 4, DNA glycosylase, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene MBD4, Length 2,470 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MBD4-201ENST00000249910 NISCHQ9Y2I1 1504 aa31.85■■■□□ 2.69
MBD4-201ENST00000249910 CCDC180Q9P1Z9 1646 aa27.21■■□□□ 1.95
MBD4-201ENST00000249910 SHROOM4Q9ULL8 1493 aa26.9■■□□□ 1.9
MBD4-201ENST00000249910 ZCCHC6Q5VYS8 1495 aaKnown RBP26.82■■□□□ 1.88
MBD4-201ENST00000249910 DCAF8L2P0C7V8 631 aa26.79■■□□□ 1.88
MBD4-201ENST00000249910 SUPT5HO00267 1087 aaKnown RBP26.15■■□□□ 1.78
MBD4-201ENST00000249910 DCAF1Q9Y4B6 1507 aa26.07■■□□□ 1.76
MBD4-201ENST00000249910 ABCC9O60706 1549 aa25.88■■□□□ 1.73
MBD4-201ENST00000249910 SCRIBQ14160 1630 aa25.54■■□□□ 1.68
MBD4-201ENST00000249910 MYO15BQ96JP2 1530 aa25.52■■□□□ 1.68
MBD4-201ENST00000249910 NACADO15069 1562 aa25.36■■□□□ 1.65
MBD4-201ENST00000249910 CHIC1Q5VXU3 224 aa25.1■■□□□ 1.61
MBD4-201ENST00000249910 RB1CC1Q8TDY2 1594 aa25.07■■□□□ 1.6
MBD4-201ENST00000249910 RSF1Q96T23 1441 aaPredicted RBP25.05■■□□□ 1.6
MBD4-201ENST00000249910 CECR2Q9BXF3 1484 aa24.95■■□□□ 1.59
MBD4-201ENST00000249910 MROH2BQ7Z745 1585 aa24.77■■□□□ 1.56
MBD4-201ENST00000249910 PABPN1Q86U42 306 aaKnown RBP eCLIP24.72■■□□□ 1.55
MBD4-201ENST00000249910 UNC13AQ9UPW8 1703 aa24.62■■□□□ 1.53
MBD4-201ENST00000249910 WIZO95785 1651 aa24.57■■□□□ 1.52
MBD4-201ENST00000249910 BAZ1AQ9NRL2 1556 aaPredicted RBP24.48■■□□□ 1.51
MBD4-201ENST00000249910 BICRAQ9NZM4 1560 aa24.43■■□□□ 1.5
MBD4-201ENST00000249910 LOC105371045A0A1W2PR82 267 aa24.4■■□□□ 1.5
MBD4-201ENST00000249910 TRIM41Q8WV44 630 aa24.36■■□□□ 1.49
MBD4-201ENST00000249910 SMARCA4P51532 1647 aa24.33■■□□□ 1.49
MBD4-201ENST00000249910 FAM9AQ8IZU1 332 aaPredicted RBP24.2■■□□□ 1.46
MBD4-201ENST00000249910 TOP2AP11388 1531 aaKnown RBP24.14■■□□□ 1.46
MBD4-201ENST00000249910 CCDC88BA6NC98 1476 aa24.11■■□□□ 1.45
MBD4-201ENST00000249910 EHMT2Q96KQ7 1210 aa24.06■■□□□ 1.44
MBD4-201ENST00000249910 SMARCA2P51531 1590 aa24.01■■□□□ 1.43
MBD4-201ENST00000249910 ATAD2BQ9ULI0 1458 aa23.91■■□□□ 1.42
MBD4-201ENST00000249910 EIF4G1Q04637 1599 aaKnown RBP23.91■■□□□ 1.42
MBD4-201ENST00000249910 PEG3Q9GZU2 1588 aa23.87■■□□□ 1.41
MBD4-201ENST00000249910 ABCC8Q09428 1581 aa23.87■■□□□ 1.41
MBD4-201ENST00000249910 BAZ1BQ9UIG0 1483 aaKnown RBP23.81■■□□□ 1.4
MBD4-201ENST00000249910 PCGF6Q9BYE7 350 aa23.8■■□□□ 1.4
MBD4-201ENST00000249910 SOGA1O94964 1423 aa23.58■■□□□ 1.37
MBD4-201ENST00000249910 WRNQ14191 1432 aaPredicted RBP eCLIP23.54■■□□□ 1.36
MBD4-201ENST00000249910 NCAPD3P42695 1498 aa23.54■■□□□ 1.36
MBD4-201ENST00000249910 RUSC2Q8N2Y8 1516 aa23.49■■□□□ 1.35
MBD4-201ENST00000249910 HMGXB3Q12766 1538 aa23.41■■□□□ 1.34
MBD4-201ENST00000249910 CSRNP3Q8WYN3 585 aa23.41■■□□□ 1.34
MBD4-201ENST00000249910 TRIM26Q12899 539 aaPredicted RBP23.4■■□□□ 1.34
MBD4-201ENST00000249910 SYNJ1O43426 1573 aa23.4■■□□□ 1.34
MBD4-201ENST00000249910 PPARGC1BQ86YN6 1023 aaKnown RBP23.37■■□□□ 1.33
MBD4-201ENST00000249910 HRCP23327 699 aa23.31■■□□□ 1.32
MBD4-201ENST00000249910 UBTFP17480 764 aaKnown RBP23.31■■□□□ 1.32
MBD4-201ENST00000249910 EEA1Q15075 1411 aa23.24■■□□□ 1.31
MBD4-201ENST00000249910 CC2D2AQ9P2K1 1620 aa23.23■■□□□ 1.31
MBD4-201ENST00000249910 CFTRP13569 1480 aa23.2■■□□□ 1.3
MBD4-201ENST00000249910 CEP162Q5TB80 1403 aa23.16■■□□□ 1.3
MBD4-201ENST00000249910 TNIKQ9UKE5 1360 aa23.15■■□□□ 1.3
MBD4-201ENST00000249910 TOP2BQ02880 1626 aa23.12■■□□□ 1.29
MBD4-201ENST00000249910 TTBK1Q5TCY1 1321 aaPredicted RBP23.11■■□□□ 1.29
MBD4-201ENST00000249910 GOLGA3Q08378 1498 aa23.09■■□□□ 1.29
MBD4-201ENST00000249910 CADPSQ9ULU8 1353 aa23.09■■□□□ 1.29
MBD4-201ENST00000249910 CUX1P39880 1505 aa23.07■■□□□ 1.28
MBD4-201ENST00000249910 RANGAP1P46060 587 aaPredicted RBP23.06■■□□□ 1.28
MBD4-201ENST00000249910 CEP164Q9UPV0 1460 aa23.03■■□□□ 1.28
MBD4-201ENST00000249910 DNAJC5BQ9UF47 199 aa23.01■■□□□ 1.27
MBD4-201ENST00000249910 RAPGEF2Q9Y4G8 1499 aa23■■□□□ 1.27
MBD4-201ENST00000249910 BIVM-ERCC5R4GMW8 1640 aa23■■□□□ 1.27
MBD4-201ENST00000249910 KIF21BO75037 1637 aa22.91■■□□□ 1.26
MBD4-201ENST00000249910 NESP48681 1621 aa22.89■■□□□ 1.25
MBD4-201ENST00000249910 CLIP1P30622 1438 aa22.86■■□□□ 1.25
MBD4-201ENST00000249910 KIF27Q86VH2 1401 aa22.86■■□□□ 1.25
MBD4-201ENST00000249910 FANCD2Q9BXW9 1451 aa22.84■■□□□ 1.25
MBD4-201ENST00000249910 PELP1Q8IZL8 1130 aaKnown RBP22.81■■□□□ 1.24
MBD4-201ENST00000249910 PRXQ9BXM0 1461 aa22.81■■□□□ 1.24
MBD4-201ENST00000249910 PRDM2Q13029 1718 aa22.77■■□□□ 1.24
MBD4-201ENST00000249910 CUX2O14529 1486 aa22.77■■□□□ 1.24
MBD4-201ENST00000249910 FGD5Q6ZNL6 1462 aa22.76■■□□□ 1.23
MBD4-201ENST00000249910 IGF1RP08069 1367 aa22.71■■□□□ 1.23
MBD4-201ENST00000249910 ERICH3Q5RHP9 1530 aa22.67■■□□□ 1.22
MBD4-201ENST00000249910 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP22.67■■□□□ 1.22
MBD4-201ENST00000249910 VPS8Q8N3P4 1428 aa22.65■■□□□ 1.22
MBD4-201ENST00000249910 RAD54L2Q9Y4B4 1467 aa22.65■■□□□ 1.22
MBD4-201ENST00000249910 APLP2Q06481 763 aa22.62■■□□□ 1.21
MBD4-201ENST00000249910 TOPBP1Q92547 1522 aa22.61■■□□□ 1.21
MBD4-201ENST00000249910 CARMIL1Q5VZK9 1371 aa22.59■■□□□ 1.21
MBD4-201ENST00000249910 POLA1P09884 1462 aaPredicted RBP22.58■■□□□ 1.21
MBD4-201ENST00000249910 DNMBPQ6XZF7 1577 aa22.56■■□□□ 1.2
MBD4-201ENST00000249910 LAMC3Q9Y6N6 1575 aa22.55■■□□□ 1.2
MBD4-201ENST00000249910 ZEB1P37275 1124 aaPredicted RBP22.55■■□□□ 1.2
MBD4-201ENST00000249910 ARAP1Q96P48 1450 aa22.53■■□□□ 1.2
MBD4-201ENST00000249910 CCER1Q8TC90 406 aaPredicted RBP22.53■■□□□ 1.2
MBD4-201ENST00000249910 URB2Q14146 1524 aaKnown RBP22.53■■□□□ 1.2
MBD4-201ENST00000249910 PDS5BQ9NTI5 1447 aa22.51■■□□□ 1.19
MBD4-201ENST00000249910 ABCA10Q8WWZ4 1543 aa22.46■■□□□ 1.19
MBD4-201ENST00000249910 TDRD9Q8NDG6 1382 aaKnown RBP22.46■■□□□ 1.19
MBD4-201ENST00000249910 HNRNPUL2Q1KMD3 747 aaKnown RBP22.46■■□□□ 1.19
MBD4-201ENST00000249910 KANK4Q5T7N3 995 aaPredicted RBP22.45■■□□□ 1.18
MBD4-201ENST00000249910 ARHGAP35Q9NRY4 1499 aa22.45■■□□□ 1.18
MBD4-201ENST00000249910 P3H3Q8IVL6 736 aa22.42■■□□□ 1.18
MBD4-201ENST00000249910 MYT1Q01538 1121 aa22.39■■□□□ 1.17
MBD4-201ENST00000249910 KIF21AQ7Z4S6 1674 aa22.36■■□□□ 1.17
MBD4-201ENST00000249910 ATP1B4Q9UN42 357 aaPredicted RBP22.27■■□□□ 1.16
MBD4-201ENST00000249910 GAPVD1Q14C86 1478 aa22.27■■□□□ 1.15
MBD4-201ENST00000249910 FHOD3Q2V2M9 1422 aa22.19■■□□□ 1.14
MBD4-201ENST00000249910 WDR97A6NE52 1622 aa22.19■■□□□ 1.14
MBD4-201ENST00000249910 AQRO60306 1485 aaKnown RBP eCLIP22.19■■□□□ 1.149e-7■■■□□ 15.4
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms