Protein–RNA interactions for Protein: Q9Y6R9

CCDC61, Coiled-coil domain-containing protein 61, humanhuman

Predictions only

Length 512 aa.

Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC61Q9Y6R9 STOX1-203ENST00000399165 1135 ntTSL 1 (best) BASIC31.53■■■□□ 2.64
CCDC61Q9Y6R9 AC006455.2-201ENST00000429931 906 ntBASIC31.53■■■□□ 2.64
CCDC61Q9Y6R9 PPM1N-207ENST00000451287 1293 ntAPPRIS P1 TSL 5 BASIC31.53■■■□□ 2.64
CCDC61Q9Y6R9 POLR2H-208ENST00000456318 1802 ntAPPRIS P1 TSL 5 BASIC31.53■■■□□ 2.64
CCDC61Q9Y6R9 RFC2-201ENST00000055077 1695 ntAPPRIS P1 TSL 1 (best) BASIC31.53■■■□□ 2.64
CCDC61Q9Y6R9 WISP2-203ENST00000372868 1600 ntAPPRIS P1 TSL 3 BASIC31.53■■■□□ 2.64
CCDC61Q9Y6R9 AC099791.1-201ENST00000416440 715 ntBASIC31.52■■■□□ 2.64
CCDC61Q9Y6R9 HRH3-203ENST00000611492 900 ntTSL 1 (best) BASIC31.52■■■□□ 2.64
CCDC61Q9Y6R9 WTAP-201ENST00000337387 1622 ntTSL 1 (best) BASIC31.52■■■□□ 2.64
CCDC61Q9Y6R9 HNRNPAB-201ENST00000355836 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC31.52■■■□□ 2.64
CCDC61Q9Y6R9 HAS2-AS1-201ENST00000514180 1656 ntTSL 1 (best) BASIC31.51■■■□□ 2.64
CCDC61Q9Y6R9 ALG2-203ENST00000476832 1880 ntAPPRIS P1 TSL 1 (best) BASIC31.51■■■□□ 2.63
CCDC61Q9Y6R9 ATP5C1-202ENST00000356708 1163 ntAPPRIS ALT1 TSL 1 (best) BASIC31.51■■■□□ 2.63
CCDC61Q9Y6R9 MYDGF-203ENST00000599630 713 ntTSL 2 BASIC31.51■■■□□ 2.63
CCDC61Q9Y6R9 SAP25-203ENST00000614631 987 ntAPPRIS P2 TSL 2 BASIC31.51■■■□□ 2.63
CCDC61Q9Y6R9 FUT11-201ENST00000372841 2056 ntAPPRIS P1 TSL 1 (best) BASIC31.51■■■□□ 2.63
CCDC61Q9Y6R9 UBTD1-201ENST00000370664 1706 ntAPPRIS P1 TSL 1 (best) BASIC31.51■■■□□ 2.63
CCDC61Q9Y6R9 SNCB-201ENST00000310112 1383 ntAPPRIS P1 TSL 1 (best) BASIC31.51■■■□□ 2.63
CCDC61Q9Y6R9 KLC1-225ENST00000557575 2188 ntTSL 5 BASIC31.51■■■□□ 2.63
CCDC61Q9Y6R9 CYC1-201ENST00000318911 1240 ntAPPRIS P1 TSL 1 (best) BASIC31.5■■■□□ 2.63
CCDC61Q9Y6R9 PLPP5-201ENST00000419686 794 ntTSL 2 BASIC31.5■■■□□ 2.63
CCDC61Q9Y6R9 AC007009.1-201ENST00000458624 429 ntTSL 2 BASIC31.5■■■□□ 2.63
CCDC61Q9Y6R9 ATP6V0B-204ENST00000471859 865 ntTSL 5 BASIC31.5■■■□□ 2.63
CCDC61Q9Y6R9 ALKAL2-204ENST00000403610 1389 ntAPPRIS P1 TSL 1 (best) BASIC31.5■■■□□ 2.63
CCDC61Q9Y6R9 VGF-203ENST00000611537 1622 ntTSL 5 BASIC31.49■■■□□ 2.63
CCDC61Q9Y6R9 TRIM72-202ENST00000613872 1573 ntTSL 1 (best) BASIC31.49■■■□□ 2.63
CCDC61Q9Y6R9 METTL23-201ENST00000341249 1155 ntAPPRIS P1 TSL 1 (best) BASIC31.49■■■□□ 2.63
CCDC61Q9Y6R9 RPUSD3-206ENST00000433535 1178 ntTSL 1 (best) BASIC31.49■■■□□ 2.63
CCDC61Q9Y6R9 CREB3L2-203ENST00000452463 1105 ntTSL 1 (best) BASIC31.49■■■□□ 2.63
CCDC61Q9Y6R9 C15orf61-202ENST00000557807 769 ntTSL 2 BASIC31.49■■■□□ 2.63
CCDC61Q9Y6R9 MIR3181-201ENST00000578512 73 ntBASIC31.49■■■□□ 2.63
CCDC61Q9Y6R9 RCC1L-201ENST00000610322 2300 ntAPPRIS P1 TSL 1 (best) BASIC31.49■■■□□ 2.63
CCDC61Q9Y6R9 FBXW5-201ENST00000325285 2274 ntAPPRIS P1 TSL 1 (best) BASIC31.49■■■□□ 2.63
CCDC61Q9Y6R9 TANGO2-207ENST00000420290 1859 ntTSL 2 BASIC31.48■■■□□ 2.63
CCDC61Q9Y6R9 HLA-L-211ENST00000482052 1765 ntBASIC31.48■■■□□ 2.63
CCDC61Q9Y6R9 MYO10-205ENST00000507288 1677 ntTSL 1 (best) BASIC31.48■■■□□ 2.63
CCDC61Q9Y6R9 PLPP1-202ENST00000307259 1597 ntAPPRIS ALT1 TSL 1 (best) BASIC31.48■■■□□ 2.63
CCDC61Q9Y6R9 MADCAM1-206ENST00000617201 1491 ntAPPRIS ALT2 TSL 5 BASIC31.48■■■□□ 2.63
CCDC61Q9Y6R9 MADCAM1-207ENST00000619333 1485 ntAPPRIS ALT2 TSL 5 BASIC31.48■■■□□ 2.63
CCDC61Q9Y6R9 MADCAM1-210ENST00000622462 1461 ntAPPRIS ALT2 TSL 5 BASIC31.48■■■□□ 2.63
CCDC61Q9Y6R9 ANKRD20A6P-201ENST00000618763 204 ntBASIC31.48■■■□□ 2.63
CCDC61Q9Y6R9 POU3F3-201ENST00000361360 3064 ntAPPRIS P1 BASIC31.48■■■□□ 2.63
CCDC61Q9Y6R9 MRPS7-203ENST00000579002 1638 ntTSL 2 BASIC31.48■■■□□ 2.63
CCDC61Q9Y6R9 MED25-211ENST00000617849 1548 ntTSL 1 (best) BASIC31.48■■■□□ 2.63
CCDC61Q9Y6R9 SNTB1-202ENST00000517992 2273 ntAPPRIS P1 TSL 1 (best) BASIC31.47■■■□□ 2.63
CCDC61Q9Y6R9 TSNARE1-208ENST00000524325 1963 ntAPPRIS P3 TSL 2 BASIC31.47■■■□□ 2.63
CCDC61Q9Y6R9 KLF15-201ENST00000296233 2574 ntAPPRIS P1 TSL 1 (best) BASIC31.47■■■□□ 2.63
CCDC61Q9Y6R9 SNRNP70-201ENST00000221448 1603 ntTSL 2 BASIC31.47■■■□□ 2.63
CCDC61Q9Y6R9 PTOV1-201ENST00000391842 1875 ntAPPRIS P1 TSL 5 BASIC31.47■■■□□ 2.63
CCDC61Q9Y6R9 IRS3P-201ENST00000223076 1006 ntBASIC31.47■■■□□ 2.63
CCDC61Q9Y6R9 PCMT1-201ENST00000367378 1293 ntAPPRIS P3 TSL 1 (best) BASIC31.47■■■□□ 2.63
CCDC61Q9Y6R9 CEP104-201ENST00000378223 1121 ntTSL 1 (best) BASIC31.47■■■□□ 2.63
CCDC61Q9Y6R9 AC116614.1-201ENST00000456949 539 ntTSL 2 BASIC31.47■■■□□ 2.63
CCDC61Q9Y6R9 AIPL1-206ENST00000571740 1202 ntAPPRIS ALT2 TSL 1 (best) BASIC31.47■■■□□ 2.63
CCDC61Q9Y6R9 AC087623.3-201ENST00000607047 1098 ntBASIC31.47■■■□□ 2.63
CCDC61Q9Y6R9 EBF4-210ENST00000609451 2012 ntAPPRIS ALT1 TSL 5 BASIC31.47■■■□□ 2.63
CCDC61Q9Y6R9 THOC6-202ENST00000326266 1419 ntAPPRIS P1 TSL 1 (best) BASIC31.47■■■□□ 2.63
CCDC61Q9Y6R9 SLC35A2-201ENST00000247138 1672 ntAPPRIS P3 TSL 1 (best) BASIC31.47■■■□□ 2.63
CCDC61Q9Y6R9 TSPOAP1-AS1-205ENST00000580022 2337 ntTSL 2 BASIC31.47■■■□□ 2.63
CCDC61Q9Y6R9 DYRK2-203ENST00000393555 2209 ntAPPRIS ALT1 TSL 1 (best) BASIC31.47■■■□□ 2.63
CCDC61Q9Y6R9 OSCAR-205ENST00000359649 1892 ntAPPRIS P4 TSL 2 BASIC31.46■■■□□ 2.63
CCDC61Q9Y6R9 ADSSL1-201ENST00000330877 1766 ntAPPRIS P1 TSL 1 (best) BASIC31.46■■■□□ 2.63
CCDC61Q9Y6R9 AC009086.3-201ENST00000623486 1008 ntBASIC31.46■■■□□ 2.63
CCDC61Q9Y6R9 STARD3NL-201ENST00000009041 1728 ntAPPRIS P1 TSL 1 (best) BASIC31.46■■■□□ 2.63
CCDC61Q9Y6R9 ARPC5L-202ENST00000353214 2507 ntAPPRIS P1 TSL 2 BASIC31.45■■■□□ 2.63
CCDC61Q9Y6R9 PLD4-205ENST00000553861 667 ntTSL 2 BASIC31.45■■■□□ 2.63
CCDC61Q9Y6R9 AC007448.3-201ENST00000585193 689 ntTSL 2 BASIC31.45■■■□□ 2.63
CCDC61Q9Y6R9 AC010336.5-201ENST00000594308 317 ntTSL 3 BASIC31.45■■■□□ 2.63
CCDC61Q9Y6R9 ATP13A2-215ENST00000617114 1723 ntTSL 5 BASIC31.45■■■□□ 2.63
CCDC61Q9Y6R9 CBWD2-201ENST00000259199 1812 ntAPPRIS P3 TSL 1 (best) BASIC31.45■■■□□ 2.62
CCDC61Q9Y6R9 LHPP-201ENST00000368839 1522 ntTSL 1 (best) BASIC31.44■■■□□ 2.62
CCDC61Q9Y6R9 ZFYVE19-201ENST00000299173 1555 ntAPPRIS ALT2 TSL 1 (best) BASIC31.44■■■□□ 2.62
CCDC61Q9Y6R9 NGEF-203ENST00000409079 1022 ntTSL 1 (best) BASIC31.44■■■□□ 2.62
CCDC61Q9Y6R9 RHOF-204ENST00000537265 699 ntTSL 2 BASIC31.44■■■□□ 2.62
CCDC61Q9Y6R9 AC233992.3-201ENST00000607491 485 ntBASIC31.44■■■□□ 2.62
CCDC61Q9Y6R9 NKILA-201ENST00000613231 537 ntTSL 4 BASIC31.44■■■□□ 2.62
CCDC61Q9Y6R9 MPST-208ENST00000628507 698 ntTSL 5 BASIC31.44■■■□□ 2.62
CCDC61Q9Y6R9 NRL-202ENST00000396997 1517 ntAPPRIS P1 TSL 1 (best) BASIC31.44■■■□□ 2.62
CCDC61Q9Y6R9 RASEF-201ENST00000340717 1765 ntTSL 2 BASIC31.43■■■□□ 2.62
CCDC61Q9Y6R9 SDF4-202ENST00000360001 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC31.43■■■□□ 2.62
CCDC61Q9Y6R9 USF2-207ENST00000595068 1612 ntTSL 5 BASIC31.43■■■□□ 2.62
CCDC61Q9Y6R9 HYI-204ENST00000372432 1066 ntTSL 1 (best) BASIC31.43■■■□□ 2.62
CCDC61Q9Y6R9 CDC37L1-202ENST00000381858 1244 ntTSL 5 BASIC31.43■■■□□ 2.62
CCDC61Q9Y6R9 BX842568.3-201ENST00000418104 571 ntBASIC31.43■■■□□ 2.62
CCDC61Q9Y6R9 DIRAS1-202ENST00000585334 774 ntAPPRIS P1 BASIC31.43■■■□□ 2.62
CCDC61Q9Y6R9 ARPC5L-201ENST00000259477 1325 ntAPPRIS P1 TSL 1 (best) BASIC31.43■■■□□ 2.62
CCDC61Q9Y6R9 ACP4-201ENST00000270593 1347 ntAPPRIS P1 TSL 1 (best) BASIC31.43■■■□□ 2.62
CCDC61Q9Y6R9 RING1-201ENST00000374656 1752 ntAPPRIS P1 TSL 1 (best) BASIC31.43■■■□□ 2.62
CCDC61Q9Y6R9 SLC19A1-202ENST00000380010 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC31.42■■■□□ 2.62
CCDC61Q9Y6R9 SRM-201ENST00000376957 1266 ntAPPRIS P1 TSL 1 (best) BASIC31.42■■■□□ 2.62
CCDC61Q9Y6R9 FUS-210ENST00000568685 1785 ntAPPRIS ALT2 TSL 5 BASIC31.42■■■□□ 2.62
CCDC61Q9Y6R9 FAM124A-201ENST00000280057 2104 ntTSL 2 BASIC31.42■■■□□ 2.62
CCDC61Q9Y6R9 AKAP17A-202ENST00000381261 2187 ntAPPRIS ALT2 TSL 1 (best) BASIC31.41■■■□□ 2.62
CCDC61Q9Y6R9 WNT11-201ENST00000322563 1930 ntAPPRIS P1 TSL 1 (best) BASIC31.41■■■□□ 2.62
CCDC61Q9Y6R9 ZIC2-201ENST00000376335 2983 ntAPPRIS P1 TSL 1 (best) BASIC31.41■■■□□ 2.62
CCDC61Q9Y6R9 ORAI3-202ENST00000562699 628 ntTSL 2 BASIC31.41■■■□□ 2.62
CCDC61Q9Y6R9 SLC10A4-201ENST00000273861 1790 ntAPPRIS P1 TSL 1 (best) BASIC31.4■■■□□ 2.62
CCDC61Q9Y6R9 ANO8-204ENST00000630631 1905 ntTSL 5 BASIC31.4■■■□□ 2.62
CCDC61Q9Y6R9 TRIR-201ENST00000242784 970 ntAPPRIS P1 TSL 1 (best) BASIC31.4■■■□□ 2.62
CCDC61Q9Y6R9 SNX3-202ENST00000349379 890 ntTSL 2 BASIC31.4■■■□□ 2.62
Retrieved 100 of 98,524 protein–RNA pairs in 82.7 ms