Protein–RNA interactions for Protein: P07339

CTSD, Cathepsin D, humanhuman

Predicted RBP Predictions only

Length 412 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTSDP07339 VEGFA-208ENST00000417285 1081 ntAPPRIS ALT2 TSL 1 (best) BASIC18.9■□□□□ 0.62
CTSDP07339 VEGFA-213ENST00000482630 1146 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
CTSDP07339 MBP-237ENST00000579129 1052 ntTSL 5 BASIC18.9■□□□□ 0.62
CTSDP07339 CAPNS1-211ENST00000590874 926 ntTSL 5 BASIC18.9■□□□□ 0.62
CTSDP07339 VEGFA-227ENST00000615393 984 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
CTSDP07339 VEGFA-228ENST00000617771 1116 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
CTSDP07339 VEGFA-229ENST00000621747 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC18.9■□□□□ 0.62
CTSDP07339 PLEKHA8-208ENST00000622102 2140 ntTSL 5 BASIC18.9■□□□□ 0.62
CTSDP07339 VEGFA-230ENST00000640482 1065 ntAPPRIS ALT2 TSL 1 (best) BASIC18.9■□□□□ 0.62
CTSDP07339 VEGFA-232ENST00000640653 1170 ntAPPRIS ALT2 TSL 1 (best) BASIC18.9■□□□□ 0.62
CTSDP07339 MRPL10-202ENST00000351111 1725 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
CTSDP07339 EPS8L1-202ENST00000245618 2198 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
CTSDP07339 WBP1-202ENST00000393972 1325 ntTSL 2 BASIC18.9■□□□□ 0.62
CTSDP07339 PPP1R1B-201ENST00000254079 1845 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
CTSDP07339 PSIP1-202ENST00000380716 1889 ntTSL 5 BASIC18.9■□□□□ 0.62
CTSDP07339 TANGO2-207ENST00000420290 1859 ntTSL 2 BASIC18.9■□□□□ 0.62
CTSDP07339 LSR-203ENST00000360798 1963 ntTSL 2 BASIC18.9■□□□□ 0.62
CTSDP07339 CHADL-201ENST00000216241 2533 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
CTSDP07339 DENND1B-204ENST00000367396 2177 ntAPPRIS P3 TSL 1 (best) BASIC18.89■□□□□ 0.62
CTSDP07339 CELF5-201ENST00000292672 1854 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
CTSDP07339 NFIX-203ENST00000397661 3143 ntTSL 5 BASIC18.89■□□□□ 0.61
CTSDP07339 GFER-205ENST00000569451 517 ntTSL 5 BASIC18.89■□□□□ 0.61
CTSDP07339 BTBD6-201ENST00000327471 1948 ntAPPRIS ALT2 TSL 2 BASIC18.89■□□□□ 0.61
CTSDP07339 YAP1-210ENST00000615667 5398 ntAPPRIS ALT2 TSL 5 BASIC18.89■□□□□ 0.61
CTSDP07339 ANKHD1-204ENST00000394722 2035 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
CTSDP07339 HTRA2-201ENST00000258080 2370 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
CTSDP07339 STEAP2-204ENST00000394626 2456 ntTSL 2 BASIC18.89■□□□□ 0.61
CTSDP07339 TERT-206ENST00000508104 2486 ntTSL 5 BASIC18.89■□□□□ 0.61
CTSDP07339 PTPRM-211ENST00000580170 5941 ntAPPRIS ALT2 TSL 1 (best) BASIC18.89■□□□□ 0.61
CTSDP07339 DPH1-203ENST00000570477 1747 ntAPPRIS ALT2 TSL 2 BASIC18.88■□□□□ 0.61
CTSDP07339 C6orf201-202ENST00000380175 1834 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
CTSDP07339 FMNL2-201ENST00000288670 5575 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
CTSDP07339 KLHL36-201ENST00000258157 1974 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
CTSDP07339 TMEM235-205ENST00000586400 2272 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
CTSDP07339 INPPL1-201ENST00000298229 4733 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
CTSDP07339 LOR-201ENST00000368742 1230 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
CTSDP07339 FLVCR1-AS1-203ENST00000426161 892 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
CTSDP07339 AC007029.1-201ENST00000604183 313 ntBASIC18.88■□□□□ 0.61
CTSDP07339 RAP2CP1-202ENST00000605179 643 ntBASIC18.88■□□□□ 0.61
CTSDP07339 TMEM200B-201ENST00000420504 2553 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
CTSDP07339 DEXI-202ENST00000469379 1393 ntAPPRIS P1 TSL 2 BASIC18.88■□□□□ 0.61
CTSDP07339 PNLIPRP2-205ENST00000611850 1407 ntTSL 5 BASIC18.88■□□□□ 0.61
CTSDP07339 LTB4R-201ENST00000345363 1616 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
CTSDP07339 IFNGR2-202ENST00000381995 1742 ntAPPRIS ALT2 TSL 5 BASIC18.88■□□□□ 0.61
CTSDP07339 GPR161-203ENST00000367836 1983 ntTSL 2 BASIC18.88■□□□□ 0.61
CTSDP07339 GRK4-206ENST00000504933 1971 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
CTSDP07339 AKT2-234ENST00000579047 2029 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
CTSDP07339 MATK-203ENST00000395045 2073 ntAPPRIS P4 TSL 2 BASIC18.88■□□□□ 0.61
CTSDP07339 FPGS-204ENST00000393706 2230 ntTSL 2 BASIC18.88■□□□□ 0.61
CTSDP07339 MAGI2-201ENST00000354212 6880 ntAPPRIS P3 TSL 1 (best) BASIC18.88■□□□□ 0.61
CTSDP07339 RALB-201ENST00000272519 2344 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
CTSDP07339 SHMT1-202ENST00000352886 2437 ntTSL 2 BASIC18.88■□□□□ 0.61
CTSDP07339 NHLH1-201ENST00000302101 2563 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
CTSDP07339 CLEC11A-201ENST00000250340 1419 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
CTSDP07339 LRRC14B-201ENST00000328278 1573 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
CTSDP07339 FHL2-203ENST00000358129 1578 ntTSL 5 BASIC18.87■□□□□ 0.61
CTSDP07339 SRPK3-203ENST00000370104 1753 ntAPPRIS ALT2 TSL 1 (best) BASIC18.87■□□□□ 0.61
CTSDP07339 CCDC24-201ENST00000372318 1463 ntAPPRIS P2 TSL 1 (best) BASIC18.87■□□□□ 0.61
CTSDP07339 TPST2-203ENST00000403880 2084 ntAPPRIS P1 TSL 5 BASIC18.87■□□□□ 0.61
CTSDP07339 UBXN2A-202ENST00000404924 1557 ntAPPRIS P1 TSL 2 BASIC18.87■□□□□ 0.61
CTSDP07339 MXD3-208ENST00000513063 861 ntAPPRIS P1 TSL 5 BASIC18.87■□□□□ 0.61
CTSDP07339 AC090877.2-201ENST00000558441 1738 ntBASIC18.87■□□□□ 0.61
CTSDP07339 FNDC11-204ENST00000615526 2954 ntAPPRIS P1 BASIC18.87■□□□□ 0.61
CTSDP07339 FAM83D-201ENST00000619304 2475 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
CTSDP07339 SAP25-204ENST00000622764 1031 ntAPPRIS ALT2 TSL 5 BASIC18.87■□□□□ 0.61
CTSDP07339 ST3GAL5-231ENST00000639119 2131 ntTSL 5 BASIC18.87■□□□□ 0.61
CTSDP07339 LRRC75A-201ENST00000409083 2656 ntAPPRIS P3 TSL 2 BASIC18.87■□□□□ 0.61
CTSDP07339 FRAT1-201ENST00000371021 2649 ntAPPRIS P1 BASIC18.87■□□□□ 0.61
CTSDP07339 WRNIP1-203ENST00000380771 2595 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
CTSDP07339 DPEP2-204ENST00000572888 2112 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
CTSDP07339 ZNF74-204ENST00000405993 1839 ntAPPRIS ALT2 TSL 5 BASIC18.86■□□□□ 0.61
CTSDP07339 CPSF4-204ENST00000436336 1738 ntAPPRIS ALT1 TSL 1 (best) BASIC18.86■□□□□ 0.61
CTSDP07339 LRRC24-202ENST00000533758 1701 ntAPPRIS ALT2 TSL 5 BASIC18.86■□□□□ 0.61
CTSDP07339 MSANTD3-207ENST00000622639 1748 ntAPPRIS P1 TSL 3 BASIC18.86■□□□□ 0.61
CTSDP07339 TPT1-202ENST00000379055 948 ntTSL 2 BASIC18.86■□□□□ 0.61
CTSDP07339 MRGPRF-AS1-203ENST00000569432 542 ntTSL 4 BASIC18.86■□□□□ 0.61
CTSDP07339 MATK-202ENST00000395040 1907 ntAPPRIS ALT2 TSL 1 (best) BASIC18.86■□□□□ 0.61
CTSDP07339 PPP1CC-206ENST00000550991 1882 ntTSL 2 BASIC18.86■□□□□ 0.61
CTSDP07339 WRNIP1-204ENST00000380773 2670 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
CTSDP07339 OLIG1-201ENST00000382348 2277 ntAPPRIS P1 BASIC18.85■□□□□ 0.61
CTSDP07339 CACNB3-205ENST00000547392 2237 ntTSL 5 BASIC18.85■□□□□ 0.61
CTSDP07339 SH3D19-211ENST00000604030 5228 ntTSL 5 BASIC18.85■□□□□ 0.61
CTSDP07339 KCNQ4-204ENST00000509682 1926 ntAPPRIS ALT2 TSL 5 BASIC18.85■□□□□ 0.61
CTSDP07339 AC026202.3-201ENST00000600805 1127 ntBASIC18.85■□□□□ 0.61
CTSDP07339 NR6A1-201ENST00000344523 1846 ntAPPRIS ALT2 TSL 5 BASIC18.85■□□□□ 0.61
CTSDP07339 MROH6-202ENST00000524906 1794 ntAPPRIS ALT2 TSL 3 BASIC18.85■□□□□ 0.61
CTSDP07339 ASB6-201ENST00000277458 2330 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
CTSDP07339 PTPRJ-201ENST00000418331 5122 ntAPPRIS P2 TSL 1 (best) BASIC18.85■□□□□ 0.61
CTSDP07339 NIPA2-203ENST00000398013 2280 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
CTSDP07339 FIZ1-201ENST00000221665 2660 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
CTSDP07339 AKT2-210ENST00000424901 5170 ntTSL 5 BASIC18.85■□□□□ 0.61
CTSDP07339 BCKDHB-202ENST00000356489 1514 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
CTSDP07339 SRI-201ENST00000265729 2010 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
CTSDP07339 SH2D3A-201ENST00000245908 2296 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
CTSDP07339 IRX4-201ENST00000231357 2221 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
CTSDP07339 CRTC2-203ENST00000368633 2644 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
CTSDP07339 DDN-AS1-202ENST00000547866 2114 ntTSL 3 BASIC18.84■□□□□ 0.61
CTSDP07339 REXO1-201ENST00000170168 4591 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
CTSDP07339 SMAD1-201ENST00000302085 1966 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
CTSDP07339 SARDH-203ENST00000371868 2266 ntTSL 2 BASIC18.84■□□□□ 0.61
Retrieved 100 of 98,524 protein–RNA pairs in 87.4 ms