Protein–RNA interactions for Protein: Q8TCU4

ALMS1, Alstrom syndrome protein 1, humanhuman

Predictions only

Length 4,167 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ALMS1Q8TCU4 PCP4L1-201ENST00000504449 1424 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
ALMS1Q8TCU4 FAM117A-201ENST00000240364 2365 ntAPPRIS P2 TSL 1 (best) BASIC15.72■□□□□ 0.11
ALMS1Q8TCU4 PCSK6-201ENST00000331826 2309 ntTSL 5 BASIC15.72■□□□□ 0.11
ALMS1Q8TCU4 LINC00454-202ENST00000430978 1327 ntTSL 5 BASIC15.72■□□□□ 0.11
ALMS1Q8TCU4 C20orf144-201ENST00000375222 571 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
ALMS1Q8TCU4 OIP5-AS1-208ENST00000560706 473 ntTSL 5 BASIC15.72■□□□□ 0.11
ALMS1Q8TCU4 LTB4R2-205ENST00000543919 1560 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
ALMS1Q8TCU4 GALK1-201ENST00000225614 1445 ntAPPRIS P1 TSL 2 BASIC15.71■□□□□ 0.11
ALMS1Q8TCU4 AC008443.4-201ENST00000503314 456 ntTSL 4 BASIC15.71■□□□□ 0.11
ALMS1Q8TCU4 TRIM2-212ENST00000632856 656 ntTSL 3 BASIC15.71■□□□□ 0.11
ALMS1Q8TCU4 CDCP1-202ENST00000425231 1416 ntAPPRIS ALT2 TSL 1 (best) BASIC15.71■□□□□ 0.11
ALMS1Q8TCU4 SPRED3-202ENST00000586301 1366 ntAPPRIS P1 TSL 5 BASIC15.71■□□□□ 0.11
ALMS1Q8TCU4 TAF9-201ENST00000217893 1283 ntAPPRIS P2 TSL 1 (best) BASIC15.71■□□□□ 0.1
ALMS1Q8TCU4 CCDC92B-201ENST00000575506 885 ntBASIC15.71■□□□□ 0.1
ALMS1Q8TCU4 PSMC3IP-208ENST00000590760 664 ntTSL 1 (best) BASIC15.71■□□□□ 0.1
ALMS1Q8TCU4 IGHV3-20-201ENST00000390606 415 ntAPPRIS P1 BASIC15.7■□□□□ 0.1
ALMS1Q8TCU4 MADCAM1-208ENST00000621286 1203 ntAPPRIS ALT2 TSL 5 BASIC15.7■□□□□ 0.1
ALMS1Q8TCU4 ANKRD53-204ENST00000457410 1671 ntTSL 5 BASIC15.7■□□□□ 0.1
ALMS1Q8TCU4 GTF2E2-201ENST00000355904 1762 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
ALMS1Q8TCU4 FAR2P4-203ENST00000560285 1739 ntTSL 2 BASIC15.7■□□□□ 0.1
ALMS1Q8TCU4 KRTAP5-2-201ENST00000412090 1118 ntAPPRIS P1 BASIC15.7■□□□□ 0.1
ALMS1Q8TCU4 ATP6V0B-205ENST00000472174 1298 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
ALMS1Q8TCU4 CCKBR-206ENST00000532715 1734 ntTSL 3 BASIC15.7■□□□□ 0.1
ALMS1Q8TCU4 PITX1-205ENST00000506438 1305 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
ALMS1Q8TCU4 RASGRP2-203ENST00000377486 667 ntTSL 3 BASIC15.7■□□□□ 0.1
ALMS1Q8TCU4 AC005775.1-201ENST00000592413 850 ntTSL 5 BASIC15.7■□□□□ 0.1
ALMS1Q8TCU4 KIAA2013-202ENST00000376576 2539 ntTSL 2 BASIC15.7■□□□□ 0.1
ALMS1Q8TCU4 ZNHIT2-201ENST00000310597 1306 ntAPPRIS P1 BASIC15.7■□□□□ 0.1
ALMS1Q8TCU4 AC011511.4-201ENST00000586529 1850 ntAPPRIS P1 TSL 5 BASIC15.7■□□□□ 0.1
ALMS1Q8TCU4 RRAGC-201ENST00000373001 2732 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
ALMS1Q8TCU4 TIMM50-201ENST00000314349 1612 ntAPPRIS P2 TSL 1 (best) BASIC15.69■□□□□ 0.1
ALMS1Q8TCU4 AL032819.3-201ENST00000640283 925 ntAPPRIS P1 TSL 5 BASIC15.69■□□□□ 0.1
ALMS1Q8TCU4 ARL6IP4-204ENST00000392435 1339 ntAPPRIS ALT2 TSL 1 (best) BASIC15.69■□□□□ 0.1
ALMS1Q8TCU4 PRKAR1B-203ENST00000403562 1917 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
ALMS1Q8TCU4 CERS2-205ENST00000368954 2505 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
ALMS1Q8TCU4 APOE-201ENST00000252486 1208 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
ALMS1Q8TCU4 BRD2-214ENST00000496118 735 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
ALMS1Q8TCU4 WFDC1-201ENST00000219454 1534 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
ALMS1Q8TCU4 KCNF1-201ENST00000295082 2289 ntAPPRIS P1 BASIC15.69■□□□□ 0.1
ALMS1Q8TCU4 RNF130-205ENST00000521389 2263 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
ALMS1Q8TCU4 pRNA.6-201ENST00000610482 90 ntBASIC15.69■□□□□ 0.1
ALMS1Q8TCU4 pRNA.5-201ENST00000612139 90 ntBASIC15.69■□□□□ 0.1
ALMS1Q8TCU4 pRNA.11-201ENST00000618423 90 ntBASIC15.69■□□□□ 0.1
ALMS1Q8TCU4 pRNA.13-201ENST00000619112 90 ntBASIC15.69■□□□□ 0.1
ALMS1Q8TCU4 C14orf80-206ENST00000392527 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC15.69■□□□□ 0.1
ALMS1Q8TCU4 FBXL6-202ENST00000455319 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC15.69■□□□□ 0.1
ALMS1Q8TCU4 AC012414.1-201ENST00000556676 535 ntBASIC15.68■□□□□ 0.1
ALMS1Q8TCU4 AC104771.1-201ENST00000603335 964 ntBASIC15.68■□□□□ 0.1
ALMS1Q8TCU4 GFRA3-202ENST00000378362 1837 ntAPPRIS ALT2 TSL 1 (best) BASIC15.68■□□□□ 0.1
ALMS1Q8TCU4 C19orf47-202ENST00000392035 2126 ntAPPRIS ALT2 TSL 1 (best) BASIC15.68■□□□□ 0.1
ALMS1Q8TCU4 ANKRD13D-211ENST00000511455 2139 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
ALMS1Q8TCU4 MRPL14-201ENST00000372014 959 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
ALMS1Q8TCU4 MIR6084-201ENST00000622012 110 ntBASIC15.68■□□□□ 0.1
ALMS1Q8TCU4 TSPAN10-203ENST00000574882 1837 ntAPPRIS P2 TSL 1 (best) BASIC15.68■□□□□ 0.1
ALMS1Q8TCU4 ARHGAP22-202ENST00000374170 2107 ntTSL 5 BASIC15.68■□□□□ 0.1
ALMS1Q8TCU4 EXOG-203ENST00000422077 1317 ntTSL 2 BASIC15.68■□□□□ 0.1
ALMS1Q8TCU4 FOXA2-202ENST00000419308 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC15.68■□□□□ 0.1
ALMS1Q8TCU4 PRKCQ-AS1-204ENST00000455810 920 ntTSL 2 BASIC15.68■□□□□ 0.1
ALMS1Q8TCU4 FAM47E-201ENST00000424749 1484 ntAPPRIS P3 TSL 5 BASIC15.68■□□□□ 0.1
ALMS1Q8TCU4 MME-202ENST00000382989 1319 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
ALMS1Q8TCU4 ACAA1-220ENST00000627515 1862 ntTSL 5 BASIC15.67■□□□□ 0.1
ALMS1Q8TCU4 C1QTNF1-207ENST00000580454 1396 ntAPPRIS P1 TSL 5 BASIC15.67■□□□□ 0.1
ALMS1Q8TCU4 AQP10-201ENST00000324978 1791 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
ALMS1Q8TCU4 TTLL1-201ENST00000266254 1645 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
ALMS1Q8TCU4 ABHD14A-202ENST00000458031 1113 ntTSL 5 BASIC15.67■□□□□ 0.1
ALMS1Q8TCU4 AL831711.1-201ENST00000636824 569 ntTSL 4 BASIC15.67■□□□□ 0.1
ALMS1Q8TCU4 KCNJ4-201ENST00000303592 2065 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
ALMS1Q8TCU4 FAM149A-201ENST00000227065 2708 ntAPPRIS P2 TSL 1 (best) BASIC15.67■□□□□ 0.1
ALMS1Q8TCU4 CBWD2-203ENST00000416503 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC15.67■□□□□ 0.1
ALMS1Q8TCU4 HES6-206ENST00000409574 738 ntTSL 2 BASIC15.67■□□□□ 0.1
ALMS1Q8TCU4 AC091138.1-202ENST00000578967 457 ntTSL 2 BASIC15.67■□□□□ 0.1
ALMS1Q8TCU4 BTBD6-205ENST00000536364 1973 ntAPPRIS P2 TSL 5 BASIC15.67■□□□□ 0.1
ALMS1Q8TCU4 HOXB7-201ENST00000239165 1371 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
ALMS1Q8TCU4 MMP25-204ENST00000612971 1017 ntTSL 5 BASIC15.67■□□□□ 0.1
ALMS1Q8TCU4 NKILA-201ENST00000613231 537 ntTSL 4 BASIC15.67■□□□□ 0.1
ALMS1Q8TCU4 SYNGR3-202ENST00000562045 1743 ntTSL 2 BASIC15.67■□□□□ 0.1
ALMS1Q8TCU4 NRXN1-228ENST00000628364 2444 ntTSL 5 BASIC15.66■□□□□ 0.1
ALMS1Q8TCU4 TMEM230-210ENST00000612323 1231 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
ALMS1Q8TCU4 RHEB-201ENST00000262187 2075 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
ALMS1Q8TCU4 CEND1-201ENST00000330106 1649 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
ALMS1Q8TCU4 WISP2-203ENST00000372868 1600 ntAPPRIS P1 TSL 3 BASIC15.66■□□□□ 0.1
ALMS1Q8TCU4 TST-202ENST00000403892 1797 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
ALMS1Q8TCU4 MIR31HG-201ENST00000304425 745 ntTSL 2 BASIC15.66■□□□□ 0.1
ALMS1Q8TCU4 GXYLT1P5-201ENST00000614548 1189 ntBASIC15.66■□□□□ 0.1
ALMS1Q8TCU4 CCDC106-205ENST00000588740 1404 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
ALMS1Q8TCU4 ABHD16B-201ENST00000369916 1491 ntAPPRIS P1 BASIC15.66■□□□□ 0.1
ALMS1Q8TCU4 FAM53B-201ENST00000280780 1568 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
ALMS1Q8TCU4 NT5C-201ENST00000245552 954 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
ALMS1Q8TCU4 IZUMO4-203ENST00000395307 944 ntAPPRIS P3 TSL 1 (best) BASIC15.65■□□□□ 0.1
ALMS1Q8TCU4 TRAPPC3-208ENST00000616074 1114 ntTSL 5 BASIC15.65■□□□□ 0.1
ALMS1Q8TCU4 LURAP1L-201ENST00000319264 1753 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
ALMS1Q8TCU4 NKAIN3-202ENST00000523211 1988 ntAPPRIS P1 TSL 2 BASIC15.65■□□□□ 0.1
ALMS1Q8TCU4 DNAJC25-GNG10-201ENST00000374294 1448 ntAPPRIS P1 TSL 2 BASIC15.65■□□□□ 0.1
ALMS1Q8TCU4 AC099681.3-201ENST00000421500 939 ntTSL 4 BASIC15.65■□□□□ 0.1
ALMS1Q8TCU4 LRRC37A17P-202ENST00000570478 572 ntTSL 4 BASIC15.65■□□□□ 0.1
ALMS1Q8TCU4 AC011825.4-201ENST00000582233 473 ntTSL 2 BASIC15.65■□□□□ 0.1
ALMS1Q8TCU4 HOMER3-206ENST00000594439 982 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
ALMS1Q8TCU4 UCN-201ENST00000296099 795 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
ALMS1Q8TCU4 PHLDA3-201ENST00000367309 896 ntAPPRIS P1 TSL 5 BASIC15.65■□□□□ 0.1
ALMS1Q8TCU4 SLC16A3-214ENST00000582743 2002 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
Retrieved 100 of 98,524 protein–RNA pairs in 59.4 ms