Protein–RNA interactions for Protein: Q9UHC9

NPC1L1, Niemann-Pick C1-like protein 1, humanhuman

Predictions only

Length 1,359 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPC1L1Q9UHC9 AP000802.1-201ENST00000500537 1934 ntTSL 1 (best) BASIC31.32■■■□□ 2.6
NPC1L1Q9UHC9 AP002893.1-201ENST00000528885 684 ntTSL 2 BASIC31.31■■■□□ 2.6
NPC1L1Q9UHC9 NAA30-203ENST00000555166 1294 ntAPPRIS ALT2 TSL 2 BASIC31.31■■■□□ 2.6
NPC1L1Q9UHC9 CCDC92-209ENST00000545891 1790 ntAPPRIS P1 TSL 2 BASIC31.31■■■□□ 2.6
NPC1L1Q9UHC9 SLC10A4-201ENST00000273861 1790 ntAPPRIS P1 TSL 1 (best) BASIC31.3■■■□□ 2.6
NPC1L1Q9UHC9 CFD-202ENST00000592860 809 ntAPPRIS ALT2 TSL 1 (best) BASIC31.3■■■□□ 2.6
NPC1L1Q9UHC9 CCDC194-202ENST00000636079 705 ntAPPRIS P1 TSL 5 BASIC31.3■■■□□ 2.6
NPC1L1Q9UHC9 MFSD7-202ENST00000347950 1599 ntTSL 2 BASIC31.29■■■□□ 2.6
NPC1L1Q9UHC9 C6orf201-202ENST00000380175 1834 ntAPPRIS P1 TSL 1 (best) BASIC31.29■■■□□ 2.6
NPC1L1Q9UHC9 TST-201ENST00000249042 1211 ntAPPRIS P1 TSL 1 (best) BASIC31.29■■■□□ 2.6
NPC1L1Q9UHC9 HAUS7-211ENST00000626181 414 ntAPPRIS ALT2 TSL 5 BASIC31.29■■■□□ 2.6
NPC1L1Q9UHC9 SLC30A3-201ENST00000233535 2260 ntAPPRIS P1 TSL 1 (best) BASIC31.28■■■□□ 2.6
NPC1L1Q9UHC9 CREB3L3-205ENST00000602257 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC31.28■■■□□ 2.6
NPC1L1Q9UHC9 UXS1-201ENST00000283148 2099 ntAPPRIS ALT1 TSL 2 BASIC31.27■■■□□ 2.6
NPC1L1Q9UHC9 HSF4-225ENST00000584272 1549 ntTSL 1 (best) BASIC31.27■■■□□ 2.6
NPC1L1Q9UHC9 LTBP3-212ENST00000529189 1997 ntTSL 2 BASIC31.27■■■□□ 2.6
NPC1L1Q9UHC9 AC135731.1-201ENST00000569415 2548 ntBASIC31.27■■■□□ 2.6
NPC1L1Q9UHC9 TSPAN17-204ENST00000503045 1019 ntTSL 5 BASIC31.27■■■□□ 2.6
NPC1L1Q9UHC9 GNPTG-201ENST00000204679 1983 ntAPPRIS P1 TSL 1 (best) BASIC31.27■■■□□ 2.6
NPC1L1Q9UHC9 KCTD5-201ENST00000301738 2482 ntAPPRIS P1 TSL 1 (best) BASIC31.26■■■□□ 2.6
NPC1L1Q9UHC9 MARCH2-201ENST00000215555 1376 ntAPPRIS P1 TSL 5 BASIC31.26■■■□□ 2.6
NPC1L1Q9UHC9 LINC01124-201ENST00000409786 2117 ntBASIC31.26■■■□□ 2.6
NPC1L1Q9UHC9 LSM4-201ENST00000252816 986 ntTSL 2 BASIC31.26■■■□□ 2.59
NPC1L1Q9UHC9 AC090241.2-201ENST00000602329 432 ntTSL 4 BASIC31.26■■■□□ 2.59
NPC1L1Q9UHC9 DUSP22-214ENST00000605315 867 ntTSL 5 BASIC31.26■■■□□ 2.59
NPC1L1Q9UHC9 EXOG-217ENST00000630638 197 ntTSL 5 BASIC31.26■■■□□ 2.59
NPC1L1Q9UHC9 ABHD8-201ENST00000247706 2090 ntAPPRIS P1 TSL 1 (best) BASIC31.26■■■□□ 2.59
NPC1L1Q9UHC9 RBFOX1-206ENST00000535565 1599 ntTSL 2 BASIC31.26■■■□□ 2.59
NPC1L1Q9UHC9 C6orf89-201ENST00000355190 1309 ntAPPRIS P3 TSL 1 (best) BASIC31.26■■■□□ 2.59
NPC1L1Q9UHC9 TMEM179-204ENST00000556573 1430 ntAPPRIS P1 TSL 3 BASIC31.25■■■□□ 2.59
NPC1L1Q9UHC9 NRL-202ENST00000396997 1517 ntAPPRIS P1 TSL 1 (best) BASIC31.25■■■□□ 2.59
NPC1L1Q9UHC9 STMN4-201ENST00000265770 1250 ntAPPRIS P1 TSL 1 (best) BASIC31.25■■■□□ 2.59
NPC1L1Q9UHC9 TRAPPC5-202ENST00000426877 765 ntAPPRIS P1 TSL 2 BASIC31.25■■■□□ 2.59
NPC1L1Q9UHC9 ERRFI1-203ENST00000469499 995 ntTSL 3 BASIC31.25■■■□□ 2.59
NPC1L1Q9UHC9 MTDHP2-201ENST00000601468 714 ntBASIC31.25■■■□□ 2.59
NPC1L1Q9UHC9 LINC00092-201ENST00000412122 1726 ntTSL 1 (best) BASIC31.25■■■□□ 2.59
NPC1L1Q9UHC9 ADIPOR1-201ENST00000340990 2177 ntAPPRIS P1 TSL 1 (best) BASIC31.24■■■□□ 2.59
NPC1L1Q9UHC9 ALDH16A1-203ENST00000540132 2174 ntTSL 2 BASIC31.24■■■□□ 2.59
NPC1L1Q9UHC9 LIMD2-205ENST00000578402 1534 ntAPPRIS P1 TSL 1 (best) BASIC31.24■■■□□ 2.59
NPC1L1Q9UHC9 FAM83F-202ENST00000473717 1917 ntTSL 1 (best) BASIC31.24■■■□□ 2.59
NPC1L1Q9UHC9 SMARCB1-201ENST00000263121 1690 ntAPPRIS P3 TSL 1 (best) BASIC31.24■■■□□ 2.59
NPC1L1Q9UHC9 C1QTNF12-201ENST00000330388 1036 ntAPPRIS P1 TSL 1 (best) BASIC31.24■■■□□ 2.59
NPC1L1Q9UHC9 AC055876.1-201ENST00000430589 895 ntTSL 2 BASIC31.24■■■□□ 2.59
NPC1L1Q9UHC9 AL356441.2-201ENST00000443009 864 ntBASIC31.24■■■□□ 2.59
NPC1L1Q9UHC9 NELFB-201ENST00000343053 2698 ntAPPRIS ALT2 TSL 1 (best) BASIC31.24■■■□□ 2.59
NPC1L1Q9UHC9 ZFYVE28-202ENST00000503000 1874 ntTSL 1 (best) BASIC31.23■■■□□ 2.59
NPC1L1Q9UHC9 YIF1A-201ENST00000359461 943 ntTSL 2 BASIC31.23■■■□□ 2.59
NPC1L1Q9UHC9 YIF1A-203ENST00000376901 1124 ntAPPRIS P1 TSL 1 (best) BASIC31.23■■■□□ 2.59
NPC1L1Q9UHC9 AC010997.5-201ENST00000609182 354 ntBASIC31.23■■■□□ 2.59
NPC1L1Q9UHC9 RAB33A-201ENST00000257017 1258 ntAPPRIS P1 TSL 1 (best) BASIC31.22■■■□□ 2.59
NPC1L1Q9UHC9 TSPY9P-201ENST00000440215 945 ntBASIC31.22■■■□□ 2.59
NPC1L1Q9UHC9 TSPY11P-201ENST00000442607 1045 ntBASIC31.22■■■□□ 2.59
NPC1L1Q9UHC9 C14orf80-211ENST00000450383 1107 ntAPPRIS ALT2 TSL 5 BASIC31.22■■■□□ 2.59
NPC1L1Q9UHC9 MED25-211ENST00000617849 1548 ntTSL 1 (best) BASIC31.22■■■□□ 2.59
NPC1L1Q9UHC9 PTPN2-202ENST00000327283 1706 ntAPPRIS P1 TSL 1 (best) BASIC31.21■■■□□ 2.59
NPC1L1Q9UHC9 KRT16P3-201ENST00000439127 1283 ntBASIC31.21■■■□□ 2.59
NPC1L1Q9UHC9 PIP5K1C-203ENST00000539785 2289 ntAPPRIS ALT2 TSL 2 BASIC31.21■■■□□ 2.59
NPC1L1Q9UHC9 MADCAM1-206ENST00000617201 1491 ntAPPRIS ALT2 TSL 5 BASIC31.2■■■□□ 2.59
NPC1L1Q9UHC9 MADCAM1-207ENST00000619333 1485 ntAPPRIS ALT2 TSL 5 BASIC31.2■■■□□ 2.59
NPC1L1Q9UHC9 MADCAM1-210ENST00000622462 1461 ntAPPRIS ALT2 TSL 5 BASIC31.2■■■□□ 2.59
NPC1L1Q9UHC9 TMED2-201ENST00000262225 2560 ntAPPRIS P1 TSL 1 (best) BASIC31.2■■■□□ 2.59
NPC1L1Q9UHC9 AC103702.2-201ENST00000433510 1270 ntTSL 2 BASIC31.2■■■□□ 2.59
NPC1L1Q9UHC9 ST3GAL5-269ENST00000640992 2292 ntAPPRIS ALT2 TSL 5 BASIC31.2■■■□□ 2.59
NPC1L1Q9UHC9 RARA-204ENST00000394089 2024 ntAPPRIS P1 TSL 2 BASIC31.2■■■□□ 2.59
NPC1L1Q9UHC9 ADSSL1-201ENST00000330877 1766 ntAPPRIS P1 TSL 1 (best) BASIC31.2■■■□□ 2.58
NPC1L1Q9UHC9 STARD3NL-201ENST00000009041 1728 ntAPPRIS P1 TSL 1 (best) BASIC31.2■■■□□ 2.58
NPC1L1Q9UHC9 C1orf35-201ENST00000272139 1427 ntAPPRIS P1 TSL 1 (best) BASIC31.2■■■□□ 2.58
NPC1L1Q9UHC9 GTF2IP1-204ENST00000616377 2632 ntTSL 2 BASIC31.19■■■□□ 2.58
NPC1L1Q9UHC9 APOE-201ENST00000252486 1208 ntAPPRIS P1 TSL 1 (best) BASIC31.19■■■□□ 2.58
NPC1L1Q9UHC9 P2RX2-205ENST00000352418 1200 ntTSL 1 (best) BASIC31.19■■■□□ 2.58
NPC1L1Q9UHC9 CD72-202ENST00000378430 585 ntTSL 3 BASIC31.19■■■□□ 2.58
NPC1L1Q9UHC9 HNRNPAB-208ENST00000515193 1595 ntAPPRIS ALT2 TSL 5 BASIC31.19■■■□□ 2.58
NPC1L1Q9UHC9 ARFIP2-202ENST00000396777 1868 ntAPPRIS P1 TSL 2 BASIC31.19■■■□□ 2.58
NPC1L1Q9UHC9 MIR6724-1-201ENST00000616420 92 ntBASIC31.18■■■□□ 2.58
NPC1L1Q9UHC9 MIR6724-2-201ENST00000616483 92 ntBASIC31.18■■■□□ 2.58
NPC1L1Q9UHC9 MIR6724-4-201ENST00000617390 92 ntBASIC31.18■■■□□ 2.58
NPC1L1Q9UHC9 MIR6724-3-201ENST00000622482 92 ntBASIC31.18■■■□□ 2.58
NPC1L1Q9UHC9 CBARP-202ENST00000382477 2453 ntAPPRIS ALT2 TSL 5 BASIC31.18■■■□□ 2.58
NPC1L1Q9UHC9 RUNDC3A-202ENST00000426726 2048 ntAPPRIS P1 TSL 1 (best) BASIC31.18■■■□□ 2.58
NPC1L1Q9UHC9 ARPC4-208ENST00000498623 942 ntTSL 2 BASIC31.17■■■□□ 2.58
NPC1L1Q9UHC9 SLC16A10-206ENST00000612036 1231 ntTSL 5 BASIC31.17■■■□□ 2.58
NPC1L1Q9UHC9 ZFYVE19-201ENST00000299173 1555 ntAPPRIS ALT2 TSL 1 (best) BASIC31.17■■■□□ 2.58
NPC1L1Q9UHC9 LRRC24-201ENST00000529415 1758 ntAPPRIS P2 TSL 1 (best) BASIC31.17■■■□□ 2.58
NPC1L1Q9UHC9 FKBP8-209ENST00000597960 1781 ntAPPRIS P3 TSL 5 BASIC31.17■■■□□ 2.58
NPC1L1Q9UHC9 ALDH1A3-203ENST00000557963 1670 ntBASIC31.17■■■□□ 2.58
NPC1L1Q9UHC9 SLC25A1-201ENST00000215882 1648 ntAPPRIS P1 TSL 1 (best) BASIC31.17■■■□□ 2.58
NPC1L1Q9UHC9 HOMER2-201ENST00000304231 1990 ntAPPRIS P4 TSL 5 BASIC31.16■■■□□ 2.58
NPC1L1Q9UHC9 FAR2P4-203ENST00000560285 1739 ntTSL 2 BASIC31.16■■■□□ 2.58
NPC1L1Q9UHC9 PSIP1-202ENST00000380716 1889 ntTSL 5 BASIC31.16■■■□□ 2.58
NPC1L1Q9UHC9 IKBIP-202ENST00000342502 1645 ntAPPRIS ALT1 TSL 1 (best) BASIC31.16■■■□□ 2.58
NPC1L1Q9UHC9 EI24-204ENST00000527235 1625 ntTSL 5 BASIC31.16■■■□□ 2.58
NPC1L1Q9UHC9 SH2D3A-202ENST00000437152 2013 ntTSL 2 BASIC31.16■■■□□ 2.58
NPC1L1Q9UHC9 DCAF4-206ENST00000509153 1521 ntAPPRIS ALT2 TSL 2 BASIC31.16■■■□□ 2.58
NPC1L1Q9UHC9 EGR4-201ENST00000436467 2377 ntAPPRIS ALT2 TSL 1 (best) BASIC31.16■■■□□ 2.58
NPC1L1Q9UHC9 SHD-204ENST00000599689 1729 ntTSL 5 BASIC31.16■■■□□ 2.58
NPC1L1Q9UHC9 DNAJC4-202ENST00000321685 1288 ntAPPRIS P3 TSL 1 (best) BASIC31.16■■■□□ 2.58
NPC1L1Q9UHC9 TMEM147-203ENST00000392205 767 ntTSL 2 BASIC31.16■■■□□ 2.58
NPC1L1Q9UHC9 AC092343.1-201ENST00000500224 729 ntTSL 3 BASIC31.16■■■□□ 2.58
NPC1L1Q9UHC9 DNAJC4-212ENST00000628077 938 ntTSL 5 BASIC31.16■■■□□ 2.58
NPC1L1Q9UHC9 TUBBP5-204ENST00000635438 565 ntTSL 4 BASIC31.16■■■□□ 2.58
Retrieved 100 of 98,524 protein–RNA pairs in 35.6 ms