Protein–RNA interactions for Protein: Q9H239

MMP28, Matrix metalloproteinase-28, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MMP28Q9H239 WNT11-201ENST00000322563 1930 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
MMP28Q9H239 AKT1S1-204ENST00000391832 1911 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
MMP28Q9H239 C2orf72-201ENST00000373640 3657 ntAPPRIS P1 TSL 2 BASIC20.23■□□□□ 0.83
MMP28Q9H239 NIPA2-203ENST00000398013 2280 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
MMP28Q9H239 GPIHBP1-201ENST00000622500 2282 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
MMP28Q9H239 TMEFF1-201ENST00000374879 2611 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
MMP28Q9H239 MED17-221ENST00000639724 2317 ntTSL 5 BASIC20.22■□□□□ 0.83
MMP28Q9H239 NR5A1-204ENST00000620110 2975 ntTSL 5 BASIC20.22■□□□□ 0.83
MMP28Q9H239 RASSF10-201ENST00000529419 2530 ntAPPRIS P1 BASIC20.22■□□□□ 0.83
MMP28Q9H239 LDLRAD3-203ENST00000528989 1879 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
MMP28Q9H239 CAMK1D-203ENST00000615792 1725 ntTSL 5 BASIC20.22■□□□□ 0.83
MMP28Q9H239 U2AF1-201ENST00000291552 962 ntAPPRIS P3 TSL 1 (best) BASIC20.22■□□□□ 0.83
MMP28Q9H239 VEGFA-202ENST00000324450 954 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
MMP28Q9H239 PPP4R4-202ENST00000328839 876 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
MMP28Q9H239 VEGFA-203ENST00000372055 1286 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
MMP28Q9H239 FAM168B-201ENST00000389915 944 ntAPPRIS P1 TSL 3 BASIC20.22■□□□□ 0.83
MMP28Q9H239 VEGFA-213ENST00000482630 1146 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
MMP28Q9H239 RPARP-AS1-205ENST00000596045 431 ntTSL 3 BASIC20.22■□□□□ 0.83
MMP28Q9H239 VEGFA-227ENST00000615393 984 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
MMP28Q9H239 VEGFA-228ENST00000617771 1116 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
MMP28Q9H239 U2AF1L5-202ENST00000619610 813 ntAPPRIS ALT2 TSL 1 (best) BASIC20.22■□□□□ 0.83
MMP28Q9H239 VEGFA-229ENST00000621747 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC20.22■□□□□ 0.83
MMP28Q9H239 VEGFA-230ENST00000640482 1065 ntAPPRIS ALT2 TSL 1 (best) BASIC20.22■□□□□ 0.83
MMP28Q9H239 VEGFA-232ENST00000640653 1170 ntAPPRIS ALT2 TSL 1 (best) BASIC20.22■□□□□ 0.83
MMP28Q9H239 PAIP1-208ENST00000514514 1603 ntTSL 5 BASIC20.22■□□□□ 0.83
MMP28Q9H239 TRIP13-201ENST00000166345 2672 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
MMP28Q9H239 CCND3-205ENST00000415497 1843 ntTSL 2 BASIC20.22■□□□□ 0.83
MMP28Q9H239 LINC01140-202ENST00000467438 2375 ntTSL 2 BASIC20.22■□□□□ 0.83
MMP28Q9H239 KIF13A-207ENST00000502704 1330 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
MMP28Q9H239 SLC35B2-201ENST00000393810 1898 ntTSL 2 BASIC20.22■□□□□ 0.83
MMP28Q9H239 ARHGEF9-210ENST00000623517 2143 ntTSL 2 BASIC20.21■□□□□ 0.83
MMP28Q9H239 RHOT1-205ENST00000545287 2516 ntAPPRIS P4 TSL 5 BASIC20.21■□□□□ 0.83
MMP28Q9H239 HOMER2-201ENST00000304231 1990 ntAPPRIS P4 TSL 5 BASIC20.21■□□□□ 0.83
MMP28Q9H239 NRXN2-204ENST00000377559 6413 ntAPPRIS ALT2 TSL 1 (best) BASIC20.21■□□□□ 0.83
MMP28Q9H239 CORO1A-201ENST00000219150 1803 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
MMP28Q9H239 PRMT5-213ENST00000553897 1857 ntTSL 2 BASIC20.21■□□□□ 0.83
MMP28Q9H239 KIAA0895-204ENST00000415803 2865 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
MMP28Q9H239 GUSB-201ENST00000304895 2300 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
MMP28Q9H239 EPCAM-201ENST00000263735 1724 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
MMP28Q9H239 PDK1-202ENST00000392571 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC20.21■□□□□ 0.83
MMP28Q9H239 SAP30L-201ENST00000297109 6226 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
MMP28Q9H239 CREG1-201ENST00000370509 1974 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
MMP28Q9H239 TMEM203-201ENST00000343666 1557 ntAPPRIS P1 BASIC20.21■□□□□ 0.83
MMP28Q9H239 RDH14-201ENST00000381249 1587 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
MMP28Q9H239 LONP1-203ENST00000585374 2882 ntTSL 5 BASIC20.2■□□□□ 0.83
MMP28Q9H239 KCNG2-201ENST00000316249 1401 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
MMP28Q9H239 BCL7B-202ENST00000411832 1458 ntTSL 2 BASIC20.2■□□□□ 0.82
MMP28Q9H239 WWC2-AS2-201ENST00000578387 2183 ntBASIC20.2■□□□□ 0.82
MMP28Q9H239 TAF10-201ENST00000299424 1215 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
MMP28Q9H239 BAX-202ENST00000345358 793 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
MMP28Q9H239 EIF5A-208ENST00000573542 1089 ntAPPRIS P1 TSL 2 BASIC20.2■□□□□ 0.82
MMP28Q9H239 KCTD15-206ENST00000588881 1211 ntAPPRIS P1 TSL 2 BASIC20.2■□□□□ 0.82
MMP28Q9H239 CHKA-202ENST00000356135 1755 ntAPPRIS ALT2 TSL 1 (best) BASIC20.2■□□□□ 0.82
MMP28Q9H239 TYMP-201ENST00000252029 1630 ntAPPRIS P3 TSL 1 (best) BASIC20.2■□□□□ 0.82
MMP28Q9H239 TYMP-203ENST00000395680 1608 ntAPPRIS P3 TSL 1 (best) BASIC20.2■□□□□ 0.82
MMP28Q9H239 TYMP-204ENST00000395681 1604 ntAPPRIS ALT2 TSL 1 (best) BASIC20.2■□□□□ 0.82
MMP28Q9H239 FKBP1A-204ENST00000400137 1622 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
MMP28Q9H239 TRIM28-201ENST00000253024 2960 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
MMP28Q9H239 KAZN-207ENST00000503743 1475 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
MMP28Q9H239 CPNE2-201ENST00000290776 2645 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
MMP28Q9H239 TMIE-201ENST00000326431 1824 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
MMP28Q9H239 RBPMS-209ENST00000520161 842 ntTSL 2 BASIC20.19■□□□□ 0.82
MMP28Q9H239 AC126177.7-201ENST00000547904 679 ntBASIC20.19■□□□□ 0.82
MMP28Q9H239 INPP5J-206ENST00000404453 1613 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
MMP28Q9H239 MRGPRF-203ENST00000441623 2282 ntAPPRIS P1 TSL 2 BASIC20.19■□□□□ 0.82
MMP28Q9H239 ATOH7-201ENST00000373673 1480 ntAPPRIS P1 BASIC20.18■□□□□ 0.82
MMP28Q9H239 RUNX2-211ENST00000625924 1458 ntAPPRIS ALT2 TSL 1 (best) BASIC20.18■□□□□ 0.82
MMP28Q9H239 CDC16-203ENST00000356221 2203 ntAPPRIS P3 TSL 1 (best) BASIC20.18■□□□□ 0.82
MMP28Q9H239 HSD17B12-202ENST00000395700 994 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
MMP28Q9H239 CRNDE-206ENST00000559432 587 ntTSL 3 BASIC20.18■□□□□ 0.82
MMP28Q9H239 LYPLA1-201ENST00000316963 2585 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
MMP28Q9H239 ANKRD28-201ENST00000399451 6564 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
MMP28Q9H239 OSBPL10-204ENST00000438237 2624 ntAPPRIS ALT2 TSL 2 BASIC20.18■□□□□ 0.82
MMP28Q9H239 EEF1D-256ENST00000618139 2238 ntTSL 5 BASIC20.18■□□□□ 0.82
MMP28Q9H239 PKMYT1-211ENST00000573944 1891 ntAPPRIS P1 TSL 5 BASIC20.18■□□□□ 0.82
MMP28Q9H239 TSEN15-201ENST00000361641 1960 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
MMP28Q9H239 RANBP10-202ENST00000448631 2232 ntTSL 2 BASIC20.17■□□□□ 0.82
MMP28Q9H239 ZGPAT-201ENST00000328969 1945 ntTSL 2 BASIC20.17■□□□□ 0.82
MMP28Q9H239 C12orf75-201ENST00000443585 1366 ntAPPRIS P1 TSL 2 BASIC20.17■□□□□ 0.82
MMP28Q9H239 D2HGDH-201ENST00000321264 2617 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
MMP28Q9H239 TAZ-216ENST00000613002 1485 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
MMP28Q9H239 FIZ1-201ENST00000221665 2660 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
MMP28Q9H239 DENND1B-204ENST00000367396 2177 ntAPPRIS P3 TSL 1 (best) BASIC20.17■□□□□ 0.82
MMP28Q9H239 AL359258.2-201ENST00000564063 1566 ntBASIC20.17■□□□□ 0.82
MMP28Q9H239 CTGF-201ENST00000367976 2339 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
MMP28Q9H239 ONECUT3-201ENST00000382349 8318 ntAPPRIS P1 TSL 5 BASIC20.16■□□□□ 0.82
MMP28Q9H239 AC137767.1-201ENST00000602918 1920 ntBASIC20.16■□□□□ 0.82
MMP28Q9H239 SMOX-203ENST00000339123 2074 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
MMP28Q9H239 LINC01918-201ENST00000436841 797 ntTSL 2 BASIC20.16■□□□□ 0.82
MMP28Q9H239 P4HA2-202ENST00000360568 2313 ntAPPRIS ALT1 TSL 1 (best) BASIC20.16■□□□□ 0.82
MMP28Q9H239 YBX2-201ENST00000007699 1590 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
MMP28Q9H239 ANXA8-204ENST00000583911 1874 ntTSL 2 BASIC20.16■□□□□ 0.82
MMP28Q9H239 KCNQ5-205ENST00000370398 6345 ntAPPRIS P3 TSL 1 (best) BASIC20.15■□□□□ 0.82
MMP28Q9H239 TPT1-202ENST00000379055 948 ntTSL 2 BASIC20.15■□□□□ 0.82
MMP28Q9H239 MAP4K3-211ENST00000484274 407 ntTSL 2 BASIC20.15■□□□□ 0.82
MMP28Q9H239 AP000911.3-201ENST00000526377 1130 ntTSL 3 BASIC20.15■□□□□ 0.82
MMP28Q9H239 CCDC47-204ENST00000582252 1719 ntTSL 2 BASIC20.15■□□□□ 0.82
MMP28Q9H239 SHD-204ENST00000599689 1729 ntTSL 5 BASIC20.15■□□□□ 0.82
MMP28Q9H239 GAS2L1-201ENST00000406549 1803 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
MMP28Q9H239 SRPK3-204ENST00000370108 1863 ntAPPRIS ALT2 TSL 5 BASIC20.15■□□□□ 0.82
Retrieved 100 of 98,524 protein–RNA pairs in 21.3 ms