Protein–RNA interactions for Protein: O60341

KDM1A, Lysine-specific histone demethylase 1A, humanhuman

Predictions only

Length 852 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KDM1AO60341 MXRA7-201ENST00000355797 5661 ntAPPRIS P4 TSL 2 BASIC22.59■■□□□ 1.21
KDM1AO60341 ATG16L2-205ENST00000534905 1614 ntTSL 1 (best) BASIC22.59■■□□□ 1.21
KDM1AO60341 GATA4-207ENST00000532059 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC22.59■■□□□ 1.21
KDM1AO60341 C4orf19-202ENST00000381980 1943 ntAPPRIS P1 TSL 1 (best) BASIC22.59■■□□□ 1.21
KDM1AO60341 C3orf80-201ENST00000326474 2718 ntAPPRIS P1 BASIC22.59■■□□□ 1.21
KDM1AO60341 TTC9-201ENST00000256367 5217 ntAPPRIS P1 TSL 1 (best) BASIC22.58■■□□□ 1.21
KDM1AO60341 AC092849.1-201ENST00000475250 303 ntTSL 4 BASIC22.58■■□□□ 1.21
KDM1AO60341 HOXC-AS1-201ENST00000505700 548 ntTSL 2 BASIC22.58■■□□□ 1.21
KDM1AO60341 LINC01925-201ENST00000579492 500 ntTSL 5 BASIC22.58■■□□□ 1.21
KDM1AO60341 KCNQ5-208ENST00000414165 6236 ntTSL 5 BASIC22.58■■□□□ 1.2
KDM1AO60341 RNF19B-203ENST00000373456 2560 ntAPPRIS P3 TSL 1 (best) BASIC22.57■■□□□ 1.2
KDM1AO60341 C14orf80-204ENST00000392522 1630 ntAPPRIS P4 TSL 5 BASIC22.57■■□□□ 1.2
KDM1AO60341 SPIRE2-205ENST00000563972 1823 ntTSL 1 (best) BASIC22.57■■□□□ 1.2
KDM1AO60341 NOX4-204ENST00000393282 560 ntTSL 1 (best) BASIC22.57■■□□□ 1.2
KDM1AO60341 PRR7-204ENST00000510492 1285 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
KDM1AO60341 EIF3J-203ENST00000535391 925 ntTSL 2 BASIC22.57■■□□□ 1.2
KDM1AO60341 KREMEN2-204ENST00000572045 2339 ntAPPRIS ALT2 TSL 1 (best) BASIC22.57■■□□□ 1.2
KDM1AO60341 GBX2-201ENST00000306318 2123 ntAPPRIS P1 TSL 1 (best) BASIC22.57■■□□□ 1.2
KDM1AO60341 PPP1R14C-201ENST00000361131 2152 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
KDM1AO60341 FPGS-221ENST00000630236 2160 ntTSL 5 BASIC22.56■■□□□ 1.2
KDM1AO60341 C8orf58-206ENST00000614574 1955 ntAPPRIS ALT2 TSL 5 BASIC22.56■■□□□ 1.2
KDM1AO60341 LHX3-201ENST00000371746 2403 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
KDM1AO60341 KCNG1-201ENST00000371571 2211 ntAPPRIS P1 TSL 1 (best) BASIC22.56■■□□□ 1.2
KDM1AO60341 EVA1B-201ENST00000270824 1054 ntAPPRIS P1 TSL 2 BASIC22.56■■□□□ 1.2
KDM1AO60341 MPP5-205ENST00000556345 1163 ntTSL 2 BASIC22.56■■□□□ 1.2
KDM1AO60341 ZNF180-205ENST00000587047 525 ntTSL 4 BASIC22.56■■□□□ 1.2
KDM1AO60341 TRIR-205ENST00000592273 783 ntTSL 3 BASIC22.56■■□□□ 1.2
KDM1AO60341 RARA-203ENST00000394086 2008 ntTSL 2 BASIC22.56■■□□□ 1.2
KDM1AO60341 SLC35B2-204ENST00000537814 1715 ntTSL 2 BASIC22.56■■□□□ 1.2
KDM1AO60341 MRPS7-203ENST00000579002 1638 ntTSL 2 BASIC22.56■■□□□ 1.2
KDM1AO60341 ARSB-206ENST00000565165 1772 ntTSL 1 (best) BASIC22.55■■□□□ 1.2
KDM1AO60341 BIN1-206ENST00000352848 2209 ntTSL 1 (best) BASIC22.55■■□□□ 1.2
KDM1AO60341 SRPK3-205ENST00000393786 1900 ntAPPRIS ALT2 TSL 1 (best) BASIC22.55■■□□□ 1.2
KDM1AO60341 FUT11-202ENST00000394790 2175 ntTSL 1 (best) BASIC22.55■■□□□ 1.2
KDM1AO60341 AC020928.2-201ENST00000588717 2197 ntBASIC22.55■■□□□ 1.2
KDM1AO60341 SMOX-203ENST00000339123 2074 ntTSL 1 (best) BASIC22.55■■□□□ 1.2
KDM1AO60341 VSTM2L-201ENST00000373459 831 ntTSL 3 BASIC22.55■■□□□ 1.2
KDM1AO60341 MDK-203ENST00000395566 828 ntAPPRIS P2 TSL 1 (best) BASIC22.55■■□□□ 1.2
KDM1AO60341 RPL31-208ENST00000409733 825 ntAPPRIS P3 TSL 1 (best) BASIC22.55■■□□□ 1.2
KDM1AO60341 CD63-202ENST00000420846 981 ntAPPRIS P1 TSL 5 BASIC22.55■■□□□ 1.2
KDM1AO60341 AC239859.2-201ENST00000444165 318 ntBASIC22.55■■□□□ 1.2
KDM1AO60341 SLC22A18-201ENST00000312221 1628 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
KDM1AO60341 BMP2K-204ENST00000502871 3195 ntAPPRIS P3 TSL 1 (best) BASIC22.55■■□□□ 1.2
KDM1AO60341 ARHGEF9-210ENST00000623517 2143 ntTSL 2 BASIC22.55■■□□□ 1.2
KDM1AO60341 SLC52A2-202ENST00000402965 1777 ntAPPRIS P1 TSL 2 BASIC22.55■■□□□ 1.2
KDM1AO60341 SERINC5-203ENST00000509193 1441 ntTSL 1 (best) BASIC22.55■■□□□ 1.2
KDM1AO60341 SLIT1-203ENST00000371041 1695 ntTSL 2 BASIC22.55■■□□□ 1.2
KDM1AO60341 FAM181A-204ENST00000557000 1652 ntAPPRIS P1 TSL 1 (best) BASIC22.55■■□□□ 1.2
KDM1AO60341 PICALM-202ENST00000393346 2340 ntAPPRIS P3 TSL 1 (best) BASIC22.54■■□□□ 1.2
KDM1AO60341 SOX10-201ENST00000360880 2861 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
KDM1AO60341 FAM118A-205ENST00000441876 1776 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
KDM1AO60341 HMX3-201ENST00000357878 1173 ntAPPRIS P1 TSL 2 BASIC22.54■■□□□ 1.2
KDM1AO60341 SMUG1-203ENST00000401977 1082 ntAPPRIS P1 TSL 5 BASIC22.54■■□□□ 1.2
KDM1AO60341 HES6-204ENST00000409182 863 ntTSL 2 BASIC22.54■■□□□ 1.2
KDM1AO60341 FAM72B-203ENST00000452190 748 ntTSL 3 BASIC22.54■■□□□ 1.2
KDM1AO60341 AL357033.1-201ENST00000370520 1933 ntTSL 2 BASIC22.54■■□□□ 1.2
KDM1AO60341 RFC2-201ENST00000055077 1695 ntAPPRIS P1 TSL 1 (best) BASIC22.54■■□□□ 1.2
KDM1AO60341 RFNG-201ENST00000310496 1828 ntAPPRIS P1 TSL 2 BASIC22.54■■□□□ 1.2
KDM1AO60341 PKIG-206ENST00000372892 1338 ntAPPRIS P1 TSL 2 BASIC22.54■■□□□ 1.2
KDM1AO60341 TAZ-216ENST00000613002 1485 ntTSL 1 (best) BASIC22.54■■□□□ 1.2
KDM1AO60341 NR2F6-201ENST00000291442 2404 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
KDM1AO60341 AC021242.3-201ENST00000607598 1377 ntBASIC22.53■■□□□ 1.2
KDM1AO60341 LSM7-203ENST00000585409 512 ntTSL 2 BASIC22.53■■□□□ 1.2
KDM1AO60341 KLHL26-202ENST00000595182 522 ntTSL 4 BASIC22.53■■□□□ 1.2
KDM1AO60341 FMNL2-201ENST00000288670 5575 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
KDM1AO60341 ZNF837-201ENST00000427624 2038 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
KDM1AO60341 NAGS-201ENST00000293404 2182 ntAPPRIS P1 TSL 1 (best) BASIC22.53■■□□□ 1.2
KDM1AO60341 HOMER3-205ENST00000542541 1607 ntAPPRIS P3 TSL 1 (best) BASIC22.53■■□□□ 1.2
KDM1AO60341 TMEM51-205ENST00000434578 1861 ntTSL 1 (best) BASIC22.52■■□□□ 1.2
KDM1AO60341 VDAC2-203ENST00000332211 1557 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
KDM1AO60341 ZNF428-201ENST00000300811 1412 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
KDM1AO60341 ZFAND5-202ENST00000343431 1073 ntAPPRIS P1 TSL 5 BASIC22.52■■□□□ 1.2
KDM1AO60341 STK32C-205ENST00000456004 607 ntTSL 2 BASIC22.52■■□□□ 1.2
KDM1AO60341 AC026785.2-201ENST00000511821 867 ntTSL 2 BASIC22.52■■□□□ 1.2
KDM1AO60341 SNHG12-212ENST00000531126 719 ntTSL 1 (best) BASIC22.52■■□□□ 1.2
KDM1AO60341 ANKRD54-201ENST00000215941 2184 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
KDM1AO60341 CPLX1-201ENST00000304062 2181 ntAPPRIS P1 TSL 1 (best) BASIC22.52■■□□□ 1.2
KDM1AO60341 PIP5K1C-203ENST00000539785 2289 ntAPPRIS ALT2 TSL 2 BASIC22.51■■□□□ 1.19
KDM1AO60341 FAM107A-203ENST00000447756 1432 ntTSL 1 (best) BASIC22.51■■□□□ 1.19
KDM1AO60341 SOX10-202ENST00000396884 2879 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
KDM1AO60341 GUCD1-202ENST00000402766 865 ntTSL 2 BASIC22.51■■□□□ 1.19
KDM1AO60341 LBH-205ENST00000407930 756 ntTSL 2 BASIC22.51■■□□□ 1.19
KDM1AO60341 KMT2E-AS1-201ENST00000453677 736 ntTSL 3 BASIC22.51■■□□□ 1.19
KDM1AO60341 MIR4787-201ENST00000607364 84 ntBASIC22.51■■□□□ 1.19
KDM1AO60341 ARHGAP29-202ENST00000370217 2043 ntTSL 1 (best) BASIC22.51■■□□□ 1.19
KDM1AO60341 PRDM13-202ENST00000369215 2429 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
KDM1AO60341 SNX5-201ENST00000377759 2270 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
KDM1AO60341 FAM124A-201ENST00000280057 2104 ntTSL 2 BASIC22.51■■□□□ 1.19
KDM1AO60341 GDF1-201ENST00000247005 2517 ntAPPRIS P1 TSL 1 (best) BASIC22.51■■□□□ 1.19
KDM1AO60341 CERS1-204ENST00000623882 2517 ntTSL 1 (best) BASIC22.51■■□□□ 1.19
KDM1AO60341 PIM3-201ENST00000360612 2369 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
KDM1AO60341 ARMC6-201ENST00000269932 2412 ntAPPRIS P1 TSL 5 BASIC22.5■■□□□ 1.19
KDM1AO60341 PFN2-210ENST00000481767 1620 ntTSL 2 BASIC22.5■■□□□ 1.19
KDM1AO60341 SRXN1-201ENST00000381962 2698 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
KDM1AO60341 CCDC24-201ENST00000372318 1463 ntAPPRIS P2 TSL 1 (best) BASIC22.5■■□□□ 1.19
KDM1AO60341 MRPS34-202ENST00000397375 1024 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
KDM1AO60341 TK2-202ENST00000417693 1046 ntTSL 2 BASIC22.5■■□□□ 1.19
KDM1AO60341 MYCL-201ENST00000372815 1944 ntTSL 1 (best) BASIC22.5■■□□□ 1.19
KDM1AO60341 AGAP3-201ENST00000335367 2675 ntTSL 1 (best) BASIC22.5■■□□□ 1.19
KDM1AO60341 KRT72-201ENST00000293745 2015 ntAPPRIS P1 TSL 1 (best) BASIC22.5■■□□□ 1.19
Retrieved 100 of 98,524 protein–RNA pairs in 61.7 ms