Protein–RNA interactions for Protein: Q9Y566

SHANK1, SH3 and multiple ankyrin repeat domains protein 1, humanhuman

Predictions only

Length 2,161 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK1Q9Y566 TMEM260-202ENST00000538838 1638 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
SHANK1Q9Y566 SLC9A3R2-201ENST00000424542 2194 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
SHANK1Q9Y566 RTN2-202ENST00000344680 2063 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
SHANK1Q9Y566 SHF-207ENST00000560540 2062 ntTSL 5 BASIC21.13■□□□□ 0.97
SHANK1Q9Y566 AL355001.2-201ENST00000620617 1191 ntBASIC21.13■□□□□ 0.97
SHANK1Q9Y566 CCNJL-201ENST00000257536 1848 ntAPPRIS P1 TSL 2 BASIC21.13■□□□□ 0.97
SHANK1Q9Y566 EVA1C-203ENST00000401402 1558 ntTSL 5 BASIC21.13■□□□□ 0.97
SHANK1Q9Y566 PHF11-202ENST00000378319 1359 ntAPPRIS P3 TSL 1 (best) BASIC21.13■□□□□ 0.97
SHANK1Q9Y566 BSCL2-205ENST00000403550 1693 ntAPPRIS P3 TSL 5 BASIC21.13■□□□□ 0.97
SHANK1Q9Y566 ZNF32-202ENST00000395797 1201 ntAPPRIS P1 TSL 2 BASIC21.12■□□□□ 0.97
SHANK1Q9Y566 TYROBP-203ENST00000544690 522 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
SHANK1Q9Y566 SSSCA1-AS1-201ENST00000567594 614 ntBASIC21.12■□□□□ 0.97
SHANK1Q9Y566 LAMTOR1-201ENST00000278671 1179 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
SHANK1Q9Y566 U2AF1-204ENST00000459639 1675 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
SHANK1Q9Y566 U2AF1L5-204ENST00000623375 1675 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
SHANK1Q9Y566 FAM66E-202ENST00000533615 2087 ntTSL 2 BASIC21.11■□□□□ 0.97
SHANK1Q9Y566 RPUSD1-207ENST00000565809 1918 ntTSL 2 BASIC21.11■□□□□ 0.97
SHANK1Q9Y566 PAOX-203ENST00000357296 1633 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
SHANK1Q9Y566 FGF8-204ENST00000347978 823 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
SHANK1Q9Y566 ATP5C1-202ENST00000356708 1163 ntAPPRIS ALT1 TSL 1 (best) BASIC21.11■□□□□ 0.97
SHANK1Q9Y566 MIR939-201ENST00000401314 82 ntBASIC21.11■□□□□ 0.97
SHANK1Q9Y566 AC097381.1-201ENST00000429019 1296 ntBASIC21.11■□□□□ 0.97
SHANK1Q9Y566 GRAMD1B-217ENST00000640939 1212 ntTSL 5 BASIC21.11■□□□□ 0.97
SHANK1Q9Y566 DAZAP1-202ENST00000336761 2290 ntTSL 5 BASIC21.11■□□□□ 0.97
SHANK1Q9Y566 DEDD-212ENST00000545495 2329 ntAPPRIS P1 TSL 3 BASIC21.11■□□□□ 0.97
SHANK1Q9Y566 COMMD5-201ENST00000305103 1373 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
SHANK1Q9Y566 NOX4-204ENST00000393282 560 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
SHANK1Q9Y566 ATP6V0B-204ENST00000471859 865 ntTSL 5 BASIC21.1■□□□□ 0.97
SHANK1Q9Y566 MIR6821-201ENST00000617625 74 ntBASIC21.1■□□□□ 0.97
SHANK1Q9Y566 ZNF784-202ENST00000591479 1559 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
SHANK1Q9Y566 NRG2-203ENST00000340391 1944 ntTSL 5 BASIC21.1■□□□□ 0.97
SHANK1Q9Y566 CTSA-203ENST00000372459 1972 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
SHANK1Q9Y566 GRAMD4P4-201ENST00000613563 1115 ntBASIC21.1■□□□□ 0.97
SHANK1Q9Y566 MIR6722-201ENST00000617286 78 ntBASIC21.1■□□□□ 0.97
SHANK1Q9Y566 AL136967.2-201ENST00000623968 743 ntBASIC21.1■□□□□ 0.97
SHANK1Q9Y566 TAZ-213ENST00000601016 1889 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
SHANK1Q9Y566 AP004609.3-201ENST00000610705 1884 ntBASIC21.1■□□□□ 0.97
SHANK1Q9Y566 RFLNA-205ENST00000546355 2354 ntAPPRIS ALT1 TSL 1 (best) BASIC21.09■□□□□ 0.97
SHANK1Q9Y566 AKAP17A-202ENST00000381261 2187 ntAPPRIS ALT2 TSL 1 (best) BASIC21.09■□□□□ 0.97
SHANK1Q9Y566 TNFRSF6B-201ENST00000369996 1124 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
SHANK1Q9Y566 AL162430.1-201ENST00000480705 870 ntBASIC21.09■□□□□ 0.97
SHANK1Q9Y566 H1FX-AS1-204ENST00000511998 917 ntTSL 5 BASIC21.09■□□□□ 0.97
SHANK1Q9Y566 SDSL-201ENST00000345635 1397 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
SHANK1Q9Y566 TMEM179-204ENST00000556573 1430 ntAPPRIS P1 TSL 3 BASIC21.09■□□□□ 0.97
SHANK1Q9Y566 FAIM-202ENST00000360570 1157 ntAPPRIS ALT1 TSL 3 BASIC21.09■□□□□ 0.97
SHANK1Q9Y566 PLD4-205ENST00000553861 667 ntTSL 2 BASIC21.08■□□□□ 0.97
SHANK1Q9Y566 SLC12A5-217ENST00000626937 1224 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
SHANK1Q9Y566 GFRA4-201ENST00000290417 1427 ntAPPRIS ALT2 TSL 1 (best) BASIC21.08■□□□□ 0.97
SHANK1Q9Y566 TMEM203-201ENST00000343666 1557 ntAPPRIS P1 BASIC21.08■□□□□ 0.97
SHANK1Q9Y566 ZDHHC20-203ENST00000400590 1869 ntAPPRIS ALT2 TSL 5 BASIC21.08■□□□□ 0.96
SHANK1Q9Y566 NR6A1-203ENST00000416460 1898 ntAPPRIS ALT2 TSL 1 (best) BASIC21.08■□□□□ 0.96
SHANK1Q9Y566 AMH-201ENST00000221496 1821 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
SHANK1Q9Y566 LLGL2-202ENST00000375227 1374 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
SHANK1Q9Y566 METTL23-201ENST00000341249 1155 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
SHANK1Q9Y566 AC136475.3-202ENST00000534742 812 ntTSL 2 BASIC21.07■□□□□ 0.96
SHANK1Q9Y566 MPP5-205ENST00000556345 1163 ntTSL 2 BASIC21.07■□□□□ 0.96
SHANK1Q9Y566 ZNF653-201ENST00000293771 2240 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
SHANK1Q9Y566 BCAP31-207ENST00000458587 1810 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
SHANK1Q9Y566 C7orf25-205ENST00000438029 1743 ntAPPRIS P1 TSL 2 BASIC21.07■□□□□ 0.96
SHANK1Q9Y566 KLC1-225ENST00000557575 2188 ntTSL 5 BASIC21.07■□□□□ 0.96
SHANK1Q9Y566 PRADC1-201ENST00000258083 1083 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
SHANK1Q9Y566 FXYD7-201ENST00000270310 712 ntAPPRIS P2 TSL 1 (best) BASIC21.07■□□□□ 0.96
SHANK1Q9Y566 STX10-202ENST00000343587 1128 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
SHANK1Q9Y566 LBH-205ENST00000407930 756 ntTSL 2 BASIC21.07■□□□□ 0.96
SHANK1Q9Y566 VAMP2-204ENST00000488857 874 ntAPPRIS ALT1 TSL 3 BASIC21.07■□□□□ 0.96
SHANK1Q9Y566 ANKRD20A6P-201ENST00000618763 204 ntBASIC21.07■□□□□ 0.96
SHANK1Q9Y566 AKAP8L-208ENST00000595465 1933 ntTSL 2 BASIC21.06■□□□□ 0.96
SHANK1Q9Y566 CFAP99-207ENST00000635017 2298 ntTSL 5 BASIC21.06■□□□□ 0.96
SHANK1Q9Y566 GATM-206ENST00000558336 1522 ntTSL 2 BASIC21.06■□□□□ 0.96
SHANK1Q9Y566 SKOR2-203ENST00000620245 3048 ntAPPRIS ALT2 TSL 5 BASIC21.06■□□□□ 0.96
SHANK1Q9Y566 DHFR-203ENST00000505337 1719 ntAPPRIS P1 TSL 2 BASIC21.06■□□□□ 0.96
SHANK1Q9Y566 MEIS3-204ENST00000558555 1715 ntAPPRIS ALT2 TSL 5 BASIC21.06■□□□□ 0.96
SHANK1Q9Y566 CEP104-201ENST00000378223 1121 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
SHANK1Q9Y566 EDA-209ENST00000525810 843 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
SHANK1Q9Y566 RRAD-201ENST00000299759 1569 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
SHANK1Q9Y566 NRM-201ENST00000259953 1755 ntAPPRIS P2 TSL 2 BASIC21.05■□□□□ 0.96
SHANK1Q9Y566 CASP9-202ENST00000348549 1621 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
SHANK1Q9Y566 CRLF1-201ENST00000392386 1792 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
SHANK1Q9Y566 RAB33A-201ENST00000257017 1258 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
SHANK1Q9Y566 NAA38-201ENST00000333775 999 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
SHANK1Q9Y566 FGF19-201ENST00000294312 2447 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
SHANK1Q9Y566 REXO4-202ENST00000371942 2360 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
SHANK1Q9Y566 FAM220A-201ENST00000313324 2214 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
SHANK1Q9Y566 PPP1R3F-205ENST00000495799 1537 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
SHANK1Q9Y566 PRSS22-203ENST00000571228 1037 ntTSL 2 BASIC21.04■□□□□ 0.96
SHANK1Q9Y566 SOX1-201ENST00000330949 2842 ntAPPRIS P1 BASIC21.04■□□□□ 0.96
SHANK1Q9Y566 PLPPR3-201ENST00000359894 2387 ntAPPRIS P3 TSL 1 (best) BASIC21.04■□□□□ 0.96
SHANK1Q9Y566 R3HCC1-201ENST00000265806 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC21.04■□□□□ 0.96
SHANK1Q9Y566 ABL2-203ENST00000392043 2140 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
SHANK1Q9Y566 C6orf89-201ENST00000355190 1309 ntAPPRIS P3 TSL 1 (best) BASIC21.03■□□□□ 0.96
SHANK1Q9Y566 MEIS1-AS3-201ENST00000454167 707 ntTSL 4 BASIC21.03■□□□□ 0.96
SHANK1Q9Y566 ARHGDIA-217ENST00000584461 886 ntTSL 2 BASIC21.03■□□□□ 0.96
SHANK1Q9Y566 PPP1CC-206ENST00000550991 1882 ntTSL 2 BASIC21.03■□□□□ 0.96
SHANK1Q9Y566 RCE1-202ENST00000524506 1379 ntTSL 5 BASIC21.03■□□□□ 0.96
SHANK1Q9Y566 C11orf80-210ENST00000527634 1666 ntAPPRIS ALT2 TSL 5 BASIC21.03■□□□□ 0.96
SHANK1Q9Y566 SIRT3-204ENST00000525319 1475 ntAPPRIS ALT2 TSL 2 BASIC21.03■□□□□ 0.96
SHANK1Q9Y566 NELFB-201ENST00000343053 2698 ntAPPRIS ALT2 TSL 1 (best) BASIC21.03■□□□□ 0.96
SHANK1Q9Y566 BCL7C-202ENST00000380317 2409 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
SHANK1Q9Y566 GPS1-204ENST00000392358 2276 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
SHANK1Q9Y566 UBL7-202ENST00000395081 1427 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
Retrieved 100 of 98,524 protein–RNA pairs in 27.7 ms