Protein–RNA interactions for Protein: P78363

ABCA4, Retinal-specific ATP-binding cassette transporter, humanhuman

Predictions only

Length 2,273 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA4P78363 TMIE-201ENST00000326431 1824 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
ABCA4P78363 GNB2-203ENST00000393926 1641 ntAPPRIS P1 TSL 5 BASIC20.07■□□□□ 0.8
ABCA4P78363 ZDHHC20-203ENST00000400590 1869 ntAPPRIS ALT2 TSL 5 BASIC20.07■□□□□ 0.8
ABCA4P78363 RCCD1-203ENST00000555155 1871 ntAPPRIS ALT1 TSL 5 BASIC20.07■□□□□ 0.8
ABCA4P78363 GADD45A-202ENST00000370986 1496 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
ABCA4P78363 HYI-206ENST00000372434 1025 ntTSL 5 BASIC20.07■□□□□ 0.8
ABCA4P78363 CDKN2A-206ENST00000494262 989 ntTSL 3 BASIC20.07■□□□□ 0.8
ABCA4P78363 ARHGDIA-217ENST00000584461 886 ntTSL 2 BASIC20.07■□□□□ 0.8
ABCA4P78363 HDGF-201ENST00000357325 2380 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
ABCA4P78363 AQP10-201ENST00000324978 1791 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
ABCA4P78363 STMN4-201ENST00000265770 1250 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
ABCA4P78363 MIR17HG-201ENST00000400282 931 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
ABCA4P78363 MIR6722-201ENST00000617286 78 ntBASIC20.06■□□□□ 0.8
ABCA4P78363 ANKS3-204ENST00000585773 1946 ntTSL 2 BASIC20.06■□□□□ 0.8
ABCA4P78363 BIN1-211ENST00000409400 2143 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
ABCA4P78363 ST3GAL5-231ENST00000639119 2131 ntTSL 5 BASIC20.06■□□□□ 0.8
ABCA4P78363 PHF23-212ENST00000576955 1944 ntTSL 2 BASIC20.06■□□□□ 0.8
ABCA4P78363 NPHS2-202ENST00000367616 1670 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
ABCA4P78363 B3GALT4-204ENST00000451237 1694 ntAPPRIS P1 BASIC20.06■□□□□ 0.8
ABCA4P78363 PCMT1-201ENST00000367378 1293 ntAPPRIS P3 TSL 1 (best) BASIC20.06■□□□□ 0.8
ABCA4P78363 NEDD4L-237ENST00000617539 728 ntTSL 2 BASIC20.06■□□□□ 0.8
ABCA4P78363 AC092902.2-206ENST00000625484 846 ntTSL 5 BASIC20.06■□□□□ 0.8
ABCA4P78363 ZNF768-201ENST00000380412 2315 ntAPPRIS P2 TSL 1 (best) BASIC20.06■□□□□ 0.8
ABCA4P78363 SF1-220ENST00000626028 704 ntTSL 2 BASIC20.05■□□□□ 0.8
ABCA4P78363 IKBKG-211ENST00000615874 1460 ntTSL 5 BASIC20.05■□□□□ 0.8
ABCA4P78363 IKBKG-215ENST00000619941 1463 ntTSL 5 BASIC20.05■□□□□ 0.8
ABCA4P78363 TMEM9-201ENST00000367330 1959 ntAPPRIS P3 TSL 1 (best) BASIC20.05■□□□□ 0.8
ABCA4P78363 BICDL2-203ENST00000572449 1984 ntAPPRIS P1 TSL 5 BASIC20.05■□□□□ 0.8
ABCA4P78363 CCDC166-201ENST00000542437 1320 ntAPPRIS P1 TSL 2 BASIC20.05■□□□□ 0.8
ABCA4P78363 PRSS22-201ENST00000161006 1386 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
ABCA4P78363 MFSD7-202ENST00000347950 1599 ntTSL 2 BASIC20.05■□□□□ 0.8
ABCA4P78363 CRACR2B-202ENST00000525077 1578 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
ABCA4P78363 DPY19L1-209ENST00000638088 5075 ntAPPRIS ALT2 TSL 5 BASIC20.05■□□□□ 0.8
ABCA4P78363 MRPL46-201ENST00000312475 1019 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
ABCA4P78363 ATP5C1-202ENST00000356708 1163 ntAPPRIS ALT1 TSL 1 (best) BASIC20.05■□□□□ 0.8
ABCA4P78363 HADH-203ENST00000505878 1719 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
ABCA4P78363 STEAP2-207ENST00000402625 1372 ntTSL 5 BASIC20.04■□□□□ 0.8
ABCA4P78363 NKAIN3-202ENST00000523211 1988 ntAPPRIS P1 TSL 2 BASIC20.04■□□□□ 0.8
ABCA4P78363 UBL7-202ENST00000395081 1427 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
ABCA4P78363 H1FX-AS1-204ENST00000511998 917 ntTSL 5 BASIC20.04■□□□□ 0.8
ABCA4P78363 TRIM14-203ENST00000375098 1792 ntAPPRIS P1 TSL 2 BASIC20.04■□□□□ 0.8
ABCA4P78363 AC112229.4-201ENST00000488671 1528 ntTSL 2 BASIC20.04■□□□□ 0.8
ABCA4P78363 ATP6V0B-204ENST00000471859 865 ntTSL 5 BASIC20.04■□□□□ 0.8
ABCA4P78363 COL13A1-203ENST00000398969 2267 ntAPPRIS ALT2 TSL 5 BASIC20.03■□□□□ 0.8
ABCA4P78363 METTL23-201ENST00000341249 1155 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
ABCA4P78363 IL20RA-202ENST00000367746 1244 ntTSL 2 BASIC20.03■□□□□ 0.8
ABCA4P78363 AL162430.1-201ENST00000480705 870 ntBASIC20.03■□□□□ 0.8
ABCA4P78363 SDS-201ENST00000257549 1606 ntAPPRIS P1 TSL 2 BASIC20.03■□□□□ 0.8
ABCA4P78363 ARL4D-201ENST00000320033 1612 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
ABCA4P78363 HTRA1-201ENST00000368984 2120 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
ABCA4P78363 AKAP8L-208ENST00000595465 1933 ntTSL 2 BASIC20.03■□□□□ 0.8
ABCA4P78363 CDH24-206ENST00000610348 2037 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
ABCA4P78363 UNC93B3-201ENST00000308076 687 ntBASIC20.02■□□□□ 0.8
ABCA4P78363 CDKN2D-201ENST00000335766 1086 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
ABCA4P78363 FAIM-203ENST00000393034 927 ntAPPRIS P3 TSL 2 BASIC20.02■□□□□ 0.8
ABCA4P78363 CRYAA-201ENST00000291554 1139 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
ABCA4P78363 RASSF5-204ENST00000580449 1932 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
ABCA4P78363 AC005703.6-201ENST00000623265 1329 ntBASIC20.02■□□□□ 0.8
ABCA4P78363 MAPKAP1-207ENST00000394060 1586 ntTSL 1 (best) BASIC20.02■□□□□ 0.79
ABCA4P78363 IHH-201ENST00000295731 2023 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
ABCA4P78363 SDHAP1-204ENST00000427415 559 ntTSL 4 BASIC20.01■□□□□ 0.79
ABCA4P78363 SMIM29-205ENST00000468145 903 ntTSL 2 BASIC20.01■□□□□ 0.79
ABCA4P78363 SMIM29-207ENST00000481533 1053 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
ABCA4P78363 AL355001.2-201ENST00000620617 1191 ntBASIC20.01■□□□□ 0.79
ABCA4P78363 HSPBP1-201ENST00000255631 1768 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
ABCA4P78363 FUT11-202ENST00000394790 2175 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
ABCA4P78363 PRADC1-201ENST00000258083 1083 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
ABCA4P78363 C7orf49-203ENST00000430372 1579 ntTSL 5 BASIC20.01■□□□□ 0.79
ABCA4P78363 MROH6-202ENST00000524906 1794 ntAPPRIS ALT2 TSL 3 BASIC20.01■□□□□ 0.79
ABCA4P78363 EDA-209ENST00000525810 843 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
ABCA4P78363 GATM-206ENST00000558336 1522 ntTSL 2 BASIC20.01■□□□□ 0.79
ABCA4P78363 GNAL-201ENST00000269162 1722 ntAPPRIS P1 TSL 2 BASIC20■□□□□ 0.79
ABCA4P78363 VAMP2-204ENST00000488857 874 ntAPPRIS ALT1 TSL 3 BASIC20■□□□□ 0.79
ABCA4P78363 RUNDC3A-201ENST00000225441 1821 ntTSL 1 (best) BASIC20■□□□□ 0.79
ABCA4P78363 KIAA2013-201ENST00000376572 2815 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
ABCA4P78363 CEND1-201ENST00000330106 1649 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
ABCA4P78363 PICK1-201ENST00000356976 2055 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
ABCA4P78363 AC010501.1-201ENST00000606270 1962 ntBASIC19.99■□□□□ 0.79
ABCA4P78363 DRAM2-211ENST00000539140 1883 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
ABCA4P78363 TNFRSF6B-201ENST00000369996 1124 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
ABCA4P78363 ZNF32-202ENST00000395797 1201 ntAPPRIS P1 TSL 2 BASIC19.99■□□□□ 0.79
ABCA4P78363 C9orf40-201ENST00000376854 2327 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
ABCA4P78363 REST-206ENST00000612429 1376 ntTSL 5 BASIC19.99■□□□□ 0.79
ABCA4P78363 REST-207ENST00000616975 1370 ntTSL 5 BASIC19.99■□□□□ 0.79
ABCA4P78363 REST-212ENST00000640343 1352 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
ABCA4P78363 STOML2-201ENST00000356493 1278 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
ABCA4P78363 CHAC1-201ENST00000444189 1204 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
ABCA4P78363 AL355987.3-201ENST00000456614 735 ntAPPRIS P1 TSL 4 BASIC19.99■□□□□ 0.79
ABCA4P78363 PRELID2-204ENST00000505416 738 ntAPPRIS P2 TSL 3 BASIC19.99■□□□□ 0.79
ABCA4P78363 GRAMD1B-217ENST00000640939 1212 ntTSL 5 BASIC19.99■□□□□ 0.79
ABCA4P78363 NXPH4-201ENST00000349394 1804 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
ABCA4P78363 LTB4R2-205ENST00000543919 1560 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
ABCA4P78363 TYROBP-203ENST00000544690 522 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
ABCA4P78363 FAM222B-213ENST00000583522 556 ntTSL 2 BASIC19.98■□□□□ 0.79
ABCA4P78363 PPIL6-203ENST00000440797 1693 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
ABCA4P78363 LCNL1-201ENST00000408973 1839 ntAPPRIS P1 TSL 2 BASIC19.98■□□□□ 0.79
ABCA4P78363 SYT6-210ENST00000641643 1587 ntBASIC19.98■□□□□ 0.79
ABCA4P78363 TSPAN4-202ENST00000397396 1332 ntTSL 5 BASIC19.98■□□□□ 0.79
ABCA4P78363 ZNF747-203ENST00000568028 1511 ntAPPRIS P1 TSL 2 BASIC19.97■□□□□ 0.79
ABCA4P78363 LAMTOR1-201ENST00000278671 1179 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
Retrieved 100 of 98,524 protein–RNA pairs in 29.4 ms