Protein–RNA interactions for Protein: O75127

PTCD1, Pentatricopeptide repeat-containing protein 1, mitochondrial, humanhuman

Known RBP Predictions only

Length 700 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD1O75127 CEND1-201ENST00000330106 1649 ntAPPRIS P1 TSL 1 (best) BASIC30.27■■■□□ 2.44
PTCD1O75127 SUSD3-202ENST00000375472 1195 ntAPPRIS P3 TSL 1 (best) BASIC30.27■■■□□ 2.44
PTCD1O75127 AC133561.4-201ENST00000566112 224 ntBASIC30.27■■■□□ 2.44
PTCD1O75127 PPP1R14A-204ENST00000591291 433 ntTSL 5 BASIC30.27■■■□□ 2.44
PTCD1O75127 PICSAR-201ENST00000615826 733 ntTSL 1 (best) BASIC30.27■■■□□ 2.44
PTCD1O75127 TMEM240-203ENST00000624426 796 ntTSL 3 BASIC30.27■■■□□ 2.44
PTCD1O75127 ARTN-203ENST00000414809 1943 ntAPPRIS P4 TSL 3 BASIC30.27■■■□□ 2.44
PTCD1O75127 RASSF5-204ENST00000580449 1932 ntTSL 1 (best) BASIC30.27■■■□□ 2.44
PTCD1O75127 PSKH1-202ENST00000570631 1509 ntTSL 1 (best) BASIC30.27■■■□□ 2.44
PTCD1O75127 TNIP2-201ENST00000315423 1974 ntAPPRIS P3 TSL 1 (best) BASIC30.26■■■□□ 2.44
PTCD1O75127 RAB33A-201ENST00000257017 1258 ntAPPRIS P1 TSL 1 (best) BASIC30.26■■■□□ 2.43
PTCD1O75127 MIR6722-201ENST00000617286 78 ntBASIC30.26■■■□□ 2.43
PTCD1O75127 BTBD6-205ENST00000536364 1973 ntAPPRIS P2 TSL 5 BASIC30.26■■■□□ 2.43
PTCD1O75127 KAT8-202ENST00000448516 1789 ntTSL 1 (best) BASIC30.26■■■□□ 2.43
PTCD1O75127 AC097639.1-201ENST00000565519 1891 ntBASIC30.25■■■□□ 2.43
PTCD1O75127 TCEA1-211ENST00000522635 1432 ntTSL 2 BASIC30.25■■■□□ 2.43
PTCD1O75127 PBX2P1-201ENST00000493219 1291 ntBASIC30.25■■■□□ 2.43
PTCD1O75127 LINC01632-201ENST00000615763 496 ntTSL 3 BASIC30.25■■■□□ 2.43
PTCD1O75127 AC243829.1-202ENST00000618848 486 ntTSL 3 BASIC30.25■■■□□ 2.43
PTCD1O75127 SLIT1-203ENST00000371041 1695 ntTSL 2 BASIC30.25■■■□□ 2.43
PTCD1O75127 COL13A1-203ENST00000398969 2267 ntAPPRIS ALT2 TSL 5 BASIC30.25■■■□□ 2.43
PTCD1O75127 CRLF1-201ENST00000392386 1792 ntAPPRIS P1 TSL 1 (best) BASIC30.24■■■□□ 2.43
PTCD1O75127 AC136475.3-202ENST00000534742 812 ntTSL 2 BASIC30.24■■■□□ 2.43
PTCD1O75127 RPRD1A-207ENST00000588737 1264 ntTSL 2 BASIC30.24■■■□□ 2.43
PTCD1O75127 FRAT2-201ENST00000371019 2213 ntAPPRIS P1 BASIC30.24■■■□□ 2.43
PTCD1O75127 COMMD5-201ENST00000305103 1373 ntAPPRIS P1 TSL 1 (best) BASIC30.24■■■□□ 2.43
PTCD1O75127 TWF2-201ENST00000305533 1718 ntAPPRIS P1 TSL 1 (best) BASIC30.24■■■□□ 2.43
PTCD1O75127 SDSL-202ENST00000403593 1449 ntAPPRIS P1 TSL 1 (best) BASIC30.23■■■□□ 2.43
PTCD1O75127 ERRFI1-203ENST00000469499 995 ntTSL 3 BASIC30.23■■■□□ 2.43
PTCD1O75127 PABPN1-207ENST00000556821 1220 ntTSL 2 BASIC30.23■■■□□ 2.43
PTCD1O75127 NKPD1-202ENST00000589776 1950 ntAPPRIS P1 BASIC30.23■■■□□ 2.43
PTCD1O75127 NOX4-204ENST00000393282 560 ntTSL 1 (best) BASIC30.22■■■□□ 2.43
PTCD1O75127 STEAP2-207ENST00000402625 1372 ntTSL 5 BASIC30.22■■■□□ 2.43
PTCD1O75127 SERF1A-202ENST00000354833 1889 ntTSL 1 (best) BASIC30.22■■■□□ 2.43
PTCD1O75127 SERF1B-201ENST00000380750 1889 ntTSL 1 (best) BASIC30.22■■■□□ 2.43
PTCD1O75127 RCCD1-203ENST00000555155 1871 ntAPPRIS ALT1 TSL 5 BASIC30.22■■■□□ 2.43
PTCD1O75127 HES5-201ENST00000378453 1306 ntAPPRIS P1 TSL 1 (best) BASIC30.22■■■□□ 2.43
PTCD1O75127 MPP5-205ENST00000556345 1163 ntTSL 2 BASIC30.21■■■□□ 2.43
PTCD1O75127 AC106739.1-201ENST00000617035 715 ntBASIC30.21■■■□□ 2.43
PTCD1O75127 YWHAH-201ENST00000248975 1825 ntAPPRIS P1 TSL 1 (best) BASIC30.21■■■□□ 2.43
PTCD1O75127 CAMKK1-201ENST00000158166 2459 ntTSL 1 (best) BASIC30.21■■■□□ 2.43
PTCD1O75127 ZDHHC16-204ENST00000370842 1877 ntAPPRIS ALT1 TSL 5 BASIC30.21■■■□□ 2.43
PTCD1O75127 ZDHHC20-203ENST00000400590 1869 ntAPPRIS ALT2 TSL 5 BASIC30.21■■■□□ 2.43
PTCD1O75127 SEPT2-205ENST00000401990 1734 ntTSL 1 (best) BASIC30.2■■■□□ 2.43
PTCD1O75127 C7orf25-205ENST00000438029 1743 ntAPPRIS P1 TSL 2 BASIC30.2■■■□□ 2.43
PTCD1O75127 FBXL6-202ENST00000455319 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC30.2■■■□□ 2.43
PTCD1O75127 KRTAP5-4-201ENST00000399682 1181 ntAPPRIS P5 BASIC30.2■■■□□ 2.43
PTCD1O75127 HSPBP1-201ENST00000255631 1768 ntAPPRIS P1 TSL 1 (best) BASIC30.2■■■□□ 2.42
PTCD1O75127 TRIM14-203ENST00000375098 1792 ntAPPRIS P1 TSL 2 BASIC30.2■■■□□ 2.42
PTCD1O75127 MROH6-211ENST00000534459 1789 ntAPPRIS ALT2 TSL 2 BASIC30.2■■■□□ 2.42
PTCD1O75127 MAPKAP1-207ENST00000394060 1586 ntTSL 1 (best) BASIC30.2■■■□□ 2.42
PTCD1O75127 PEX7-201ENST00000318471 1464 ntAPPRIS P1 TSL 1 (best) BASIC30.19■■■□□ 2.42
PTCD1O75127 LBH-205ENST00000407930 756 ntTSL 2 BASIC30.19■■■□□ 2.42
PTCD1O75127 MYL5-208ENST00000511290 781 ntTSL 1 (best) BASIC30.19■■■□□ 2.42
PTCD1O75127 AC009097.2-201ENST00000562763 465 ntTSL 2 BASIC30.19■■■□□ 2.42
PTCD1O75127 SHISA9-205ENST00000639941 1135 ntAPPRIS ALT2 TSL 5 BASIC30.19■■■□□ 2.42
PTCD1O75127 PICK1-201ENST00000356976 2055 ntAPPRIS P1 TSL 1 (best) BASIC30.19■■■□□ 2.42
PTCD1O75127 SAC3D1-201ENST00000398846 1566 ntAPPRIS P1 TSL 1 (best) BASIC30.19■■■□□ 2.42
PTCD1O75127 TSPAN4-202ENST00000397396 1332 ntTSL 5 BASIC30.19■■■□□ 2.42
PTCD1O75127 UNC93B3-201ENST00000308076 687 ntBASIC30.18■■■□□ 2.42
PTCD1O75127 MTMR1-202ENST00000370390 2755 ntAPPRIS P1 TSL 1 (best) BASIC30.17■■■□□ 2.42
PTCD1O75127 EBPL-204ENST00000378272 766 ntTSL 3 BASIC30.17■■■□□ 2.42
PTCD1O75127 ZNRF2P3-201ENST00000424200 374 ntBASIC30.17■■■□□ 2.42
PTCD1O75127 AC019163.1-201ENST00000512634 610 ntTSL 2 BASIC30.17■■■□□ 2.42
PTCD1O75127 MROH6-202ENST00000524906 1794 ntAPPRIS ALT2 TSL 3 BASIC30.17■■■□□ 2.42
PTCD1O75127 HMCES-204ENST00000502878 1952 ntAPPRIS P1 TSL 1 (best) BASIC30.17■■■□□ 2.42
PTCD1O75127 ZNF747-203ENST00000568028 1511 ntAPPRIS P1 TSL 2 BASIC30.17■■■□□ 2.42
PTCD1O75127 GGA1-204ENST00000381756 2107 ntTSL 1 (best) BASIC30.16■■■□□ 2.42
PTCD1O75127 GUK1-205ENST00000366722 850 ntTSL 3 BASIC30.16■■■□□ 2.42
PTCD1O75127 PRICKLE4-201ENST00000394259 939 ntAPPRIS ALT2 TSL 5 BASIC30.16■■■□□ 2.42
PTCD1O75127 LCNL1-201ENST00000408973 1839 ntAPPRIS P1 TSL 2 BASIC30.16■■■□□ 2.42
PTCD1O75127 BIN1-211ENST00000409400 2143 ntTSL 1 (best) BASIC30.16■■■□□ 2.42
PTCD1O75127 NPHS2-202ENST00000367616 1670 ntTSL 1 (best) BASIC30.15■■■□□ 2.42
PTCD1O75127 EEF1D-201ENST00000317198 1458 ntAPPRIS ALT2 TSL 5 BASIC30.15■■■□□ 2.42
PTCD1O75127 IL20RA-202ENST00000367746 1244 ntTSL 2 BASIC30.15■■■□□ 2.42
PTCD1O75127 MRPL41-201ENST00000371443 1262 ntAPPRIS P1 TSL 1 (best) BASIC30.15■■■□□ 2.42
PTCD1O75127 CCDC107-203ENST00000378407 899 ntAPPRIS ALT2 TSL 2 BASIC30.15■■■□□ 2.42
PTCD1O75127 NDUFS3-206ENST00000528192 561 ntTSL 5 BASIC30.15■■■□□ 2.42
PTCD1O75127 NRL-205ENST00000560550 788 ntTSL 1 (best) BASIC30.15■■■□□ 2.42
PTCD1O75127 TMIE-201ENST00000326431 1824 ntAPPRIS P1 TSL 1 (best) BASIC30.15■■■□□ 2.42
PTCD1O75127 STMN4-201ENST00000265770 1250 ntAPPRIS P1 TSL 1 (best) BASIC30.14■■■□□ 2.42
PTCD1O75127 YRDC-201ENST00000373044 1826 ntAPPRIS P1 TSL 1 (best) BASIC30.14■■■□□ 2.42
PTCD1O75127 MFSD7-202ENST00000347950 1599 ntTSL 2 BASIC30.14■■■□□ 2.42
PTCD1O75127 ZIC2-201ENST00000376335 2983 ntAPPRIS P1 TSL 1 (best) BASIC30.14■■■□□ 2.41
PTCD1O75127 C1QTNF12-201ENST00000330388 1036 ntAPPRIS P1 TSL 1 (best) BASIC30.13■■■□□ 2.41
PTCD1O75127 CARD19-201ENST00000375464 855 ntAPPRIS P1 TSL 1 (best) BASIC30.13■■■□□ 2.41
PTCD1O75127 AP006621.1-201ENST00000532946 536 ntTSL 5 BASIC30.13■■■□□ 2.41
PTCD1O75127 AC142381.2-201ENST00000566120 298 ntBASIC30.13■■■□□ 2.41
PTCD1O75127 CHST13-201ENST00000319340 1789 ntAPPRIS P1 TSL 1 (best) BASIC30.13■■■□□ 2.41
PTCD1O75127 TMEM179-204ENST00000556573 1430 ntAPPRIS P1 TSL 3 BASIC30.13■■■□□ 2.41
PTCD1O75127 VIPR2-203ENST00000402066 1926 ntAPPRIS ALT2 TSL 5 BASIC30.12■■■□□ 2.41
PTCD1O75127 C7orf49-203ENST00000430372 1579 ntTSL 5 BASIC30.12■■■□□ 2.41
PTCD1O75127 SDS-201ENST00000257549 1606 ntAPPRIS P1 TSL 2 BASIC30.12■■■□□ 2.41
PTCD1O75127 RALB-203ENST00000420510 1252 ntAPPRIS P1 TSL 2 BASIC30.12■■■□□ 2.41
PTCD1O75127 CAPNS1-205ENST00000588780 1035 ntAPPRIS ALT2 TSL 5 BASIC30.12■■■□□ 2.41
PTCD1O75127 AL136162.1-201ENST00000607711 1078 ntBASIC30.12■■■□□ 2.41
PTCD1O75127 HIST1H2AL-201ENST00000613174 393 ntAPPRIS P1 BASIC30.12■■■□□ 2.41
PTCD1O75127 SRP68-202ENST00000539137 2386 ntTSL 2 BASIC30.12■■■□□ 2.41
PTCD1O75127 EPCAM-201ENST00000263735 1724 ntAPPRIS P1 TSL 1 (best) BASIC30.11■■■□□ 2.41
PTCD1O75127 CKB-201ENST00000348956 1709 ntAPPRIS P1 TSL 1 (best) BASIC30.11■■■□□ 2.41
Retrieved 100 of 98,524 protein–RNA pairs in 50.3 ms