Protein–RNA interactions for Protein: O43542

XRCC3, DNA repair protein XRCC3, humanhuman

Predictions only

Length 346 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
XRCC3O43542 HACD1-202ENST00000361271 2237 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
XRCC3O43542 KCNIP1-203ENST00000390656 2249 ntTSL 5 BASIC19.97■□□□□ 0.79
XRCC3O43542 SLC25A29-202ENST00000392908 2242 ntTSL 2 BASIC19.97■□□□□ 0.79
XRCC3O43542 CACNG6-202ENST00000346968 645 ntTSL 5 BASIC19.97■□□□□ 0.79
XRCC3O43542 APBB3-204ENST00000358580 2020 ntTSL 5 BASIC19.97■□□□□ 0.79
XRCC3O43542 RAD21L1-202ENST00000402452 1707 ntTSL 5 BASIC19.96■□□□□ 0.79
XRCC3O43542 MID1IP1-203ENST00000457894 1902 ntAPPRIS P1 TSL 3 BASIC19.96■□□□□ 0.79
XRCC3O43542 CCR10-201ENST00000332438 1773 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
XRCC3O43542 HMGA2-206ENST00000536545 1788 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
XRCC3O43542 UBE2S-201ENST00000264552 2548 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
XRCC3O43542 SYT7-202ENST00000535826 1621 ntTSL 5 BASIC19.96■□□□□ 0.79
XRCC3O43542 CTXN1-201ENST00000318978 1274 ntAPPRIS P1 TSL 1 (best) BASIC19.96■□□□□ 0.79
XRCC3O43542 MAP4K3-211ENST00000484274 407 ntTSL 2 BASIC19.96■□□□□ 0.79
XRCC3O43542 DGAT1-201ENST00000332324 1473 ntTSL 5 BASIC19.96■□□□□ 0.79
XRCC3O43542 MYO10-205ENST00000507288 1677 ntTSL 1 (best) BASIC19.96■□□□□ 0.79
XRCC3O43542 MYH7B-209ENST00000618182 6197 ntAPPRIS ALT2 TSL 5 BASIC19.96■□□□□ 0.79
XRCC3O43542 SLC22A17-201ENST00000206544 2284 ntAPPRIS P4 TSL 1 (best) BASIC19.96■□□□□ 0.79
XRCC3O43542 DTNB-210ENST00000407186 2275 ntTSL 5 BASIC19.96■□□□□ 0.79
XRCC3O43542 CCR10-203ENST00000591765 1942 ntTSL 3 BASIC19.96■□□□□ 0.79
XRCC3O43542 CLDND1-202ENST00000394180 2228 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
XRCC3O43542 ACTL10-201ENST00000330271 2028 ntAPPRIS P1 BASIC19.95■□□□□ 0.78
XRCC3O43542 ITM2C-202ENST00000326427 2078 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
XRCC3O43542 RBMXL2-201ENST00000306904 1874 ntAPPRIS P1 BASIC19.95■□□□□ 0.78
XRCC3O43542 NPHP3-202ENST00000383282 782 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
XRCC3O43542 HGH1-207ENST00000628266 258 ntTSL 5 BASIC19.95■□□□□ 0.78
XRCC3O43542 RABEP2-201ENST00000357573 2175 ntTSL 1 (best) BASIC19.95■□□□□ 0.78
XRCC3O43542 OPN3-201ENST00000366554 2620 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
XRCC3O43542 UBALD2-201ENST00000327490 1593 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
XRCC3O43542 KIF2A-202ENST00000401507 2539 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
XRCC3O43542 PAOX-203ENST00000357296 1633 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
XRCC3O43542 DENND1A-201ENST00000373618 3003 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
XRCC3O43542 VSTM4-201ENST00000298454 2170 ntAPPRIS P3 TSL 2 BASIC19.94■□□□□ 0.78
XRCC3O43542 HHEX-201ENST00000282728 1727 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
XRCC3O43542 SHMT1-201ENST00000316694 2464 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
XRCC3O43542 C19orf68-201ENST00000328759 2277 ntAPPRIS ALT2 TSL 1 (best) BASIC19.94■□□□□ 0.78
XRCC3O43542 PLEKHB1-201ENST00000227214 2016 ntAPPRIS ALT1 TSL 1 (best) BASIC19.94■□□□□ 0.78
XRCC3O43542 CMPK2-202ENST00000404168 2042 ntAPPRIS ALT2 TSL 1 (best) BASIC19.94■□□□□ 0.78
XRCC3O43542 PLEK2-201ENST00000216446 1549 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
XRCC3O43542 ARHGAP27-207ENST00000528273 2319 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
XRCC3O43542 SLC25A42-201ENST00000318596 3120 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
XRCC3O43542 PCK2-201ENST00000216780 2357 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
XRCC3O43542 PPP1R12C-201ENST00000263433 2924 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
XRCC3O43542 RYK-208ENST00000620660 2942 ntAPPRIS P3 TSL 1 (best) BASIC19.94■□□□□ 0.78
XRCC3O43542 B3GNT4-201ENST00000324189 1642 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
XRCC3O43542 PKM-201ENST00000319622 2717 ntAPPRIS P5 TSL 2 BASIC19.94■□□□□ 0.78
XRCC3O43542 UPF3A-201ENST00000351487 2235 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
XRCC3O43542 AC098864.1-205ENST00000315302 2260 ntTSL 2 BASIC19.93■□□□□ 0.78
XRCC3O43542 MYBL2-201ENST00000217026 2639 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
XRCC3O43542 GALC-202ENST00000393568 2054 ntTSL 2 BASIC19.93■□□□□ 0.78
XRCC3O43542 CDIPT-201ENST00000219789 2353 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
XRCC3O43542 RANBP1-202ENST00000402752 1132 ntAPPRIS ALT1 TSL 1 (best) BASIC19.93■□□□□ 0.78
XRCC3O43542 DDN-AS1-203ENST00000552284 934 ntTSL 3 BASIC19.93■□□□□ 0.78
XRCC3O43542 AC092902.2-221ENST00000628476 965 ntTSL 5 BASIC19.93■□□□□ 0.78
XRCC3O43542 CDK2AP1-201ENST00000261692 1625 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
XRCC3O43542 ACBD4-214ENST00000591859 1998 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
XRCC3O43542 TTC39A-203ENST00000371747 1876 ntTSL 2 BASIC19.92■□□□□ 0.78
XRCC3O43542 LDHB-203ENST00000396076 1538 ntAPPRIS P1 TSL 5 BASIC19.92■□□□□ 0.78
XRCC3O43542 C21orf2-203ENST00000397956 1634 ntAPPRIS ALT2 TSL 1 (best) BASIC19.92■□□□□ 0.78
XRCC3O43542 KCTD15-206ENST00000588881 1211 ntAPPRIS P1 TSL 2 BASIC19.92■□□□□ 0.78
XRCC3O43542 EEF1D-256ENST00000618139 2238 ntTSL 5 BASIC19.92■□□□□ 0.78
XRCC3O43542 MYBL1-204ENST00000522677 5192 ntAPPRIS P1 TSL 1 (best) BASIC19.92■□□□□ 0.78
XRCC3O43542 ELOA-201ENST00000418390 5154 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
XRCC3O43542 ASF1B-201ENST00000263382 2059 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
XRCC3O43542 S1PR4-201ENST00000246115 1565 ntAPPRIS P1 BASIC19.91■□□□□ 0.78
XRCC3O43542 NCK2-201ENST00000233154 2683 ntAPPRIS P1 TSL 5 BASIC19.91■□□□□ 0.78
XRCC3O43542 KISS1R-201ENST00000234371 1625 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
XRCC3O43542 KCTD15-207ENST00000589786 1625 ntAPPRIS P1 TSL 2 BASIC19.91■□□□□ 0.78
XRCC3O43542 SLC52A2-202ENST00000402965 1777 ntAPPRIS P1 TSL 2 BASIC19.91■□□□□ 0.78
XRCC3O43542 NRG2-201ENST00000289409 2535 ntAPPRIS ALT2 TSL 5 BASIC19.91■□□□□ 0.78
XRCC3O43542 LSM14B-204ENST00000370915 1079 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
XRCC3O43542 HES6-205ENST00000409356 528 ntTSL 2 BASIC19.91■□□□□ 0.78
XRCC3O43542 DUX4L11-201ENST00000611504 1267 ntBASIC19.91■□□□□ 0.78
XRCC3O43542 DUX4L12-201ENST00000614593 1267 ntBASIC19.91■□□□□ 0.78
XRCC3O43542 DUX4L14-201ENST00000621227 1267 ntBASIC19.91■□□□□ 0.78
XRCC3O43542 CACNA1H-202ENST00000358590 8069 ntAPPRIS ALT2 TSL 5 BASIC19.91■□□□□ 0.78
XRCC3O43542 LSR-202ENST00000354900 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC19.91■□□□□ 0.78
XRCC3O43542 NKX2-4-201ENST00000351817 2238 ntAPPRIS P1 TSL 5 BASIC19.91■□□□□ 0.78
XRCC3O43542 BARHL1-201ENST00000263610 2341 ntAPPRIS P1 TSL 1 (best) BASIC19.91■□□□□ 0.78
XRCC3O43542 PCSK6-215ENST00000611967 3336 ntTSL 1 (best) BASIC19.91■□□□□ 0.78
XRCC3O43542 ACSF2-207ENST00000504392 1881 ntTSL 2 BASIC19.9■□□□□ 0.78
XRCC3O43542 NIPSNAP1-201ENST00000216121 2237 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
XRCC3O43542 ARRDC1-AS1-203ENST00000623970 2210 ntTSL 5 BASIC19.9■□□□□ 0.78
XRCC3O43542 C16orf74-204ENST00000602719 1002 ntAPPRIS ALT2 TSL 3 BASIC19.9■□□□□ 0.78
XRCC3O43542 KCTD8-201ENST00000360029 2587 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
XRCC3O43542 FKBP8-209ENST00000597960 1781 ntAPPRIS P3 TSL 5 BASIC19.9■□□□□ 0.78
XRCC3O43542 MAPK12-211ENST00000622558 1779 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
XRCC3O43542 FAM83F-202ENST00000473717 1917 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
XRCC3O43542 ZNF503-AS2-201ENST00000425916 2026 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
XRCC3O43542 POLR2J2-202ENST00000358438 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC19.9■□□□□ 0.78
XRCC3O43542 POLR2J3-220ENST00000613744 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC19.9■□□□□ 0.78
XRCC3O43542 CDC16-203ENST00000356221 2203 ntAPPRIS P3 TSL 1 (best) BASIC19.9■□□□□ 0.78
XRCC3O43542 MFSD7-201ENST00000322224 2123 ntAPPRIS P3 TSL 1 (best) BASIC19.89■□□□□ 0.77
XRCC3O43542 SDF4-202ENST00000360001 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC19.89■□□□□ 0.77
XRCC3O43542 OSCAR-207ENST00000391761 1826 ntAPPRIS ALT2 TSL 1 (best) BASIC19.89■□□□□ 0.77
XRCC3O43542 CCND3-223ENST00000616010 2047 ntTSL 5 BASIC19.89■□□□□ 0.77
XRCC3O43542 SLC25A29-201ENST00000359232 2385 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
XRCC3O43542 YWHAH-201ENST00000248975 1825 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
XRCC3O43542 ATG16L2-205ENST00000534905 1614 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
XRCC3O43542 ARHGDIA-203ENST00000541078 1517 ntAPPRIS P1 TSL 3 BASIC19.88■□□□□ 0.77
XRCC3O43542 AC078883.1-202ENST00000450443 1397 ntTSL 3 BASIC19.88■□□□□ 0.77
Retrieved 100 of 98,524 protein–RNA pairs in 80.8 ms