Protein–RNA interactions for Protein: A0A5B6

TCRBV3S1, T-cell receptor beta variable 28 (Fragment), humanhuman

Predictions only

Length 114 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TCRBV3S1A0A5B6 ATP8B2-201ENST00000368487 1523 ntTSL 1 (best) BASIC21.94■■□□□ 1.1
TCRBV3S1A0A5B6 SYT7-202ENST00000535826 1621 ntTSL 5 BASIC21.94■■□□□ 1.1
TCRBV3S1A0A5B6 IL15RA-214ENST00000525219 1850 ntAPPRIS ALT2 TSL 1 (best) BASIC21.94■■□□□ 1.1
TCRBV3S1A0A5B6 DONSON-202ENST00000303113 2028 ntTSL 5 BASIC21.94■■□□□ 1.1
TCRBV3S1A0A5B6 AC233723.2-201ENST00000623798 2106 ntBASIC21.94■■□□□ 1.1
TCRBV3S1A0A5B6 GSC-201ENST00000238558 1264 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
TCRBV3S1A0A5B6 HOXC9-201ENST00000303450 1516 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
TCRBV3S1A0A5B6 KAT5-201ENST00000341318 2296 ntTSL 1 (best) BASIC21.93■■□□□ 1.1
TCRBV3S1A0A5B6 SLC25A29-201ENST00000359232 2385 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
TCRBV3S1A0A5B6 SURF1-201ENST00000371974 1093 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
TCRBV3S1A0A5B6 B3GALT6-201ENST00000379198 2777 ntAPPRIS P1 BASIC21.93■■□□□ 1.1
TCRBV3S1A0A5B6 AKT1S1-204ENST00000391832 1911 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
TCRBV3S1A0A5B6 NME2-202ENST00000393190 866 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
TCRBV3S1A0A5B6 SURF1-205ENST00000615505 991 ntTSL 1 (best) BASIC21.93■■□□□ 1.1
TCRBV3S1A0A5B6 IDI1-201ENST00000381344 2301 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
TCRBV3S1A0A5B6 SMARCD2-201ENST00000225742 1800 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
TCRBV3S1A0A5B6 B3GNT4-201ENST00000324189 1642 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
TCRBV3S1A0A5B6 RP9-201ENST00000297157 1121 ntAPPRIS P2 TSL 1 (best) BASIC21.92■■□□□ 1.1
TCRBV3S1A0A5B6 LINC01971-201ENST00000617888 1048 ntBASIC21.92■■□□□ 1.1
TCRBV3S1A0A5B6 CNN3-201ENST00000370206 2165 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
TCRBV3S1A0A5B6 FAM83F-202ENST00000473717 1917 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
TCRBV3S1A0A5B6 RBMXL2-201ENST00000306904 1874 ntAPPRIS P1 BASIC21.92■■□□□ 1.1
TCRBV3S1A0A5B6 SLC35B2-201ENST00000393810 1898 ntTSL 2 BASIC21.92■■□□□ 1.1
TCRBV3S1A0A5B6 CCR10-201ENST00000332438 1773 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
TCRBV3S1A0A5B6 PAOX-203ENST00000357296 1633 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
TCRBV3S1A0A5B6 EP400NL-214ENST00000641289 2402 ntBASIC21.91■■□□□ 1.1
TCRBV3S1A0A5B6 POTEF-201ENST00000361163 1586 ntTSL 5 BASIC21.91■■□□□ 1.1
TCRBV3S1A0A5B6 B3GALNT2-202ENST00000366600 2015 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
TCRBV3S1A0A5B6 HLA-V-202ENST00000446817 847 ntBASIC21.91■■□□□ 1.1
TCRBV3S1A0A5B6 AC104109.3-201ENST00000519718 483 ntAPPRIS P1 TSL 5 BASIC21.91■■□□□ 1.1
TCRBV3S1A0A5B6 BIN1-202ENST00000316724 2693 ntAPPRIS P4 TSL 1 (best) BASIC21.91■■□□□ 1.1
TCRBV3S1A0A5B6 UBALD2-201ENST00000327490 1593 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
TCRBV3S1A0A5B6 OLIG2-202ENST00000382357 2578 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
TCRBV3S1A0A5B6 DGAT1-201ENST00000332324 1473 ntTSL 5 BASIC21.9■■□□□ 1.1
TCRBV3S1A0A5B6 AC093323.1-201ENST00000307533 2311 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
TCRBV3S1A0A5B6 H2AFY-217ENST00000511689 2789 ntAPPRIS P4 TSL 1 (best) BASIC21.9■■□□□ 1.1
TCRBV3S1A0A5B6 AC113189.4-201ENST00000575331 5553 ntTSL 1 (best) BASIC21.9■■□□□ 1.1
TCRBV3S1A0A5B6 SDF4-202ENST00000360001 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC21.9■■□□□ 1.1
TCRBV3S1A0A5B6 ZBTB46-202ENST00000302995 2335 ntAPPRIS P1 TSL 2 BASIC21.9■■□□□ 1.1
TCRBV3S1A0A5B6 GRM6-202ENST00000517717 2673 ntAPPRIS P1 TSL 5 BASIC21.9■■□□□ 1.1
TCRBV3S1A0A5B6 LDHB-203ENST00000396076 1538 ntAPPRIS P1 TSL 5 BASIC21.9■■□□□ 1.1
TCRBV3S1A0A5B6 TDRKH-206ENST00000440583 2296 ntTSL 5 BASIC21.9■■□□□ 1.1
TCRBV3S1A0A5B6 PQLC3-204ENST00000441908 1784 ntTSL 2 BASIC21.89■■□□□ 1.1
TCRBV3S1A0A5B6 PCSK6-220ENST00000622483 3132 ntAPPRIS ALT2 TSL 1 (best) BASIC21.89■■□□□ 1.1
TCRBV3S1A0A5B6 ELL3-201ENST00000319359 2352 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.1
TCRBV3S1A0A5B6 ZNF503-AS2-201ENST00000425916 2026 ntTSL 1 (best) BASIC21.89■■□□□ 1.1
TCRBV3S1A0A5B6 LINC00565-201ENST00000562710 2331 ntBASIC21.89■■□□□ 1.1
TCRBV3S1A0A5B6 QKI-207ENST00000453779 5685 ntTSL 1 (best) BASIC21.89■■□□□ 1.09
TCRBV3S1A0A5B6 KCNQ5-213ENST00000629977 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC21.89■■□□□ 1.09
TCRBV3S1A0A5B6 SCAMP3-202ENST00000355379 1537 ntTSL 1 (best) BASIC21.89■■□□□ 1.09
TCRBV3S1A0A5B6 SLC35D3-201ENST00000331858 2359 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
TCRBV3S1A0A5B6 SLC52A2-202ENST00000402965 1777 ntAPPRIS P1 TSL 2 BASIC21.89■■□□□ 1.09
TCRBV3S1A0A5B6 RRAD-202ENST00000420652 1476 ntAPPRIS P1 TSL 1 (best) BASIC21.89■■□□□ 1.09
TCRBV3S1A0A5B6 NIPSNAP2-201ENST00000322090 1999 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
TCRBV3S1A0A5B6 POU2F3-206ENST00000543440 1953 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
TCRBV3S1A0A5B6 MCMBP-202ENST00000369077 2465 ntAPPRIS ALT1 TSL 1 (best) BASIC21.88■■□□□ 1.09
TCRBV3S1A0A5B6 C8orf82-202ENST00000524821 2476 ntAPPRIS P2 TSL 1 (best) BASIC21.88■■□□□ 1.09
TCRBV3S1A0A5B6 STK25-234ENST00000535007 2459 ntTSL 2 BASIC21.88■■□□□ 1.09
TCRBV3S1A0A5B6 ANXA8-204ENST00000583911 1874 ntTSL 2 BASIC21.88■■□□□ 1.09
TCRBV3S1A0A5B6 POLR3H-201ENST00000337566 1330 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
TCRBV3S1A0A5B6 SLC35D2-202ENST00000375257 889 ntTSL 2 BASIC21.88■■□□□ 1.09
TCRBV3S1A0A5B6 PFKFB3-201ENST00000317350 1999 ntAPPRIS ALT1 TSL 5 BASIC21.88■■□□□ 1.09
TCRBV3S1A0A5B6 FUT11-201ENST00000372841 2056 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
TCRBV3S1A0A5B6 CORO1A-201ENST00000219150 1803 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
TCRBV3S1A0A5B6 PLEK2-201ENST00000216446 1549 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
TCRBV3S1A0A5B6 GAS1-201ENST00000298743 2827 ntAPPRIS P1 BASIC21.87■■□□□ 1.09
TCRBV3S1A0A5B6 HSD17B1-201ENST00000225929 1265 ntAPPRIS ALT2 TSL 2 BASIC21.87■■□□□ 1.09
TCRBV3S1A0A5B6 ARHGEF7-AS2-201ENST00000425094 1239 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
TCRBV3S1A0A5B6 COPZ2-210ENST00000621465 895 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
TCRBV3S1A0A5B6 RFNG-201ENST00000310496 1828 ntAPPRIS P1 TSL 2 BASIC21.87■■□□□ 1.09
TCRBV3S1A0A5B6 EGR4-202ENST00000545030 2372 ntAPPRIS P2 TSL 1 (best) BASIC21.87■■□□□ 1.09
TCRBV3S1A0A5B6 SPSB3-208ENST00000566339 1784 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
TCRBV3S1A0A5B6 FKBP8-209ENST00000597960 1781 ntAPPRIS P3 TSL 5 BASIC21.87■■□□□ 1.09
TCRBV3S1A0A5B6 PTRH1-205ENST00000423807 1570 ntTSL 2 BASIC21.87■■□□□ 1.09
TCRBV3S1A0A5B6 PPIL6-203ENST00000440797 1693 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
TCRBV3S1A0A5B6 SPAG7-205ENST00000573366 1668 ntTSL 3 BASIC21.86■■□□□ 1.09
TCRBV3S1A0A5B6 CCND3-223ENST00000616010 2047 ntTSL 5 BASIC21.86■■□□□ 1.09
TCRBV3S1A0A5B6 MAP4K3-211ENST00000484274 407 ntTSL 2 BASIC21.86■■□□□ 1.09
TCRBV3S1A0A5B6 ATG16L2-205ENST00000534905 1614 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
TCRBV3S1A0A5B6 CDX1-201ENST00000231656 1758 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
TCRBV3S1A0A5B6 MOGS-202ENST00000409065 2668 ntTSL 5 BASIC21.85■■□□□ 1.09
TCRBV3S1A0A5B6 YWHAH-201ENST00000248975 1825 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
TCRBV3S1A0A5B6 C6orf136-201ENST00000293604 1978 ntTSL 1 (best) BASIC21.85■■□□□ 1.09
TCRBV3S1A0A5B6 NEK6-214ENST00000545174 2573 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
TCRBV3S1A0A5B6 EBPL-201ENST00000242827 914 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
TCRBV3S1A0A5B6 CAAP1-205ENST00000520187 773 ntTSL 5 BASIC21.85■■□□□ 1.09
TCRBV3S1A0A5B6 GAS2L1-201ENST00000406549 1803 ntTSL 1 (best) BASIC21.85■■□□□ 1.09
TCRBV3S1A0A5B6 FAHD1-203ENST00000427358 1974 ntAPPRIS P1 BASIC21.85■■□□□ 1.09
TCRBV3S1A0A5B6 SEPT4-205ENST00000426861 1906 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
TCRBV3S1A0A5B6 PRODH-203ENST00000357068 2462 ntAPPRIS P3 TSL 1 (best) BASIC21.84■■□□□ 1.09
TCRBV3S1A0A5B6 RUNDC3A-202ENST00000426726 2048 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
TCRBV3S1A0A5B6 NEIL1-206ENST00000564784 2019 ntAPPRIS P1 TSL 2 BASIC21.84■■□□□ 1.09
TCRBV3S1A0A5B6 TPRN-202ENST00000409012 2718 ntAPPRIS P2 TSL 1 (best) BASIC21.84■■□□□ 1.09
TCRBV3S1A0A5B6 TMEM259-201ENST00000333175 2581 ntAPPRIS P3 TSL 1 (best) BASIC21.84■■□□□ 1.09
TCRBV3S1A0A5B6 ZNF837-202ENST00000597582 1969 ntAPPRIS P1 TSL 2 BASIC21.84■■□□□ 1.09
TCRBV3S1A0A5B6 SKIDA1-201ENST00000444772 2667 ntAPPRIS ALT2 TSL 5 BASIC21.84■■□□□ 1.09
TCRBV3S1A0A5B6 RARA-AS1-201ENST00000581080 1790 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
TCRBV3S1A0A5B6 CDK2AP1-201ENST00000261692 1625 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
TCRBV3S1A0A5B6 CKB-201ENST00000348956 1709 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
TCRBV3S1A0A5B6 B3GNT6-202ENST00000622824 2503 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
Retrieved 100 of 98,524 protein–RNA pairs in 98.9 ms