Protein–RNA interactions for Protein: Q6ZN17

LIN28B, Protein lin-28 homolog B, humanhuman

Known RBP eCLIP

Length 250 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIN28BQ6ZN17 SEC13-219ENST00000492602 393 ntTSL 36.59□□□□□ -1.359e-12■□□□□ 10
LIN28BQ6ZN17 EPB41-208ENST00000460378 5212 ntTSL 1 (best)10.58□□□□□ -0.724e-6■□□□□ 10
LIN28BQ6ZN17 EIF2B3-204ENST00000439363 892 ntTSL 36.83□□□□□ -1.322e-6■□□□□ 10
LIN28BQ6ZN17 VPS54-201ENST00000272322 3463 ntAPPRIS P3 TSL 5 BASIC16.49■□□□□ 0.232e-7■□□□□ 10
LIN28BQ6ZN17 NR6A1-205ENST00000487099 7031 ntAPPRIS P3 TSL 1 (best) BASIC15.52■□□□□ 0.072e-7■□□□□ 10
LIN28BQ6ZN17 VPS54-203ENST00000409558 4337 ntAPPRIS ALT1 TSL 1 (best) BASIC13.33□□□□□ -0.282e-7■□□□□ 10
LIN28BQ6ZN17 HDLBP-231ENST00000467435 639 ntTSL 212.87□□□□□ -0.352e-9■□□□□ 10
LIN28BQ6ZN17 HDLBP-233ENST00000470710 578 ntTSL 29.29□□□□□ -0.922e-9■□□□□ 10
LIN28BQ6ZN17 HDLBP-226ENST00000453141 997 ntTSL 38.58□□□□□ -1.042e-9■□□□□ 10
LIN28BQ6ZN17 CTNNB1-213ENST00000482042 1366 ntTSL 27.26□□□□□ -1.252e-7■□□□□ 10
LIN28BQ6ZN17 ACSL4-209ENST00000505075 390 ntTSL 34.52□□□□□ -1.692e-7■□□□□ 10
LIN28BQ6ZN17 VPS54-202ENST00000354504 3594 ntTSL 1 (best) BASIC2.33□□□□□ -2.042e-7■□□□□ 10
LIN28BQ6ZN17 RPS29-206ENST00000557111 488 ntTSL 2 BASIC19.43■□□□□ 0.74e-26■□□□□ 10
LIN28BQ6ZN17 RPS29-207ENST00000557367 499 ntTSL 215.32■□□□□ 0.044e-26■□□□□ 10
LIN28BQ6ZN17 RPS29-204ENST00000554075 826 ntTSL 1 (best)9.16□□□□□ -0.944e-26■□□□□ 10
LIN28BQ6ZN17 RPS29-205ENST00000556230 624 ntTSL 1 (best)8.68□□□□□ -1.024e-26■□□□□ 10
LIN28BQ6ZN17 RPS29-201ENST00000245458 296 ntAPPRIS P1 TSL 1 (best) BASIC7.45□□□□□ -1.224e-26■□□□□ 10
LIN28BQ6ZN17 RPS29-202ENST00000396020 7062 ntTSL 1 (best) BASIC6.89□□□□□ -1.314e-26■□□□□ 10
LIN28BQ6ZN17 COX7B-202ENST00000475465 685 ntTSL 210.4□□□□□ -0.744e-13■□□□□ 10
LIN28BQ6ZN17 COX7B-203ENST00000481445 2471 ntAPPRIS P1 TSL 1 (best) BASIC6.76□□□□□ -1.334e-13■□□□□ 10
LIN28BQ6ZN17 COX7B-201ENST00000373335 497 ntTSL 23.01□□□□□ -1.934e-13■□□□□ 10
LIN28BQ6ZN17 CP-203ENST00000460674 2269 ntTSL 1 (best)5.72□□□□□ -1.493e-7■□□□□ 10
LIN28BQ6ZN17 CP-209ENST00000479771 1150 ntTSL 53.7□□□□□ -1.823e-7■□□□□ 10
LIN28BQ6ZN17 DNAJC10-211ENST00000640034 888 ntTSL 5 BASIC14.99□□□□□ -0.013e-8■□□□□ 10
LIN28BQ6ZN17 DNAJC10-205ENST00000469118 545 ntTSL 510.41□□□□□ -0.743e-8■□□□□ 10
LIN28BQ6ZN17 PSAP-204ENST00000495196 344 ntTSL 214.09□□□□□ -0.151e-10■□□□□ 10
LIN28BQ6ZN17 PPP1CA-204ENST00000526510 1677 ntTSL 1 (best)21.01■□□□□ 0.959e-8■□□□□ 10
LIN28BQ6ZN17 PPP1CA-208ENST00000532446 1465 ntTSL 519.43■□□□□ 0.79e-8■□□□□ 10
LIN28BQ6ZN17 WDR13-203ENST00000466962 684 ntTSL 318.3■□□□□ 0.529e-8■□□□□ 10
LIN28BQ6ZN17 WARS-232ENST00000556645 2508 ntTSL 5 BASIC15.98■□□□□ 0.154e-6■□□□□ 10
LIN28BQ6ZN17 WARS-203ENST00000358655 2466 ntTSL 2 BASIC15.09■□□□□ 0.014e-6■□□□□ 10
LIN28BQ6ZN17 WARS-230ENST00000556504 847 ntTSL 511.49□□□□□ -0.574e-6■□□□□ 10
LIN28BQ6ZN17 WARS-202ENST00000355338 3092 ntAPPRIS P1 TSL 1 (best) BASIC10.81□□□□□ -0.684e-6■□□□□ 10
LIN28BQ6ZN17 WARS-201ENST00000344102 2690 ntTSL 5 BASIC10.73□□□□□ -0.694e-6■□□□□ 10
LIN28BQ6ZN17 WARS-238ENST00000557135 2080 ntAPPRIS P1 TSL 1 (best) BASIC10.34□□□□□ -0.754e-6■□□□□ 10
LIN28BQ6ZN17 WARS-204ENST00000392882 2938 ntAPPRIS P1 TSL 1 (best) BASIC8.63□□□□□ -1.034e-6■□□□□ 10
LIN28BQ6ZN17 WARS-205ENST00000553395 801 ntTSL 54.9□□□□□ -1.634e-6■□□□□ 10
LIN28BQ6ZN17 AFP-206ENST00000514279 693 ntTSL 26.81□□□□□ -1.322e-42■□□□□ 10
LIN28BQ6ZN17 AFP-204ENST00000508838 728 ntTSL 26.52□□□□□ -1.372e-42■□□□□ 10
LIN28BQ6ZN17 HNRNPU-229ENST00000640440 871 ntTSL 316.39■□□□□ 0.213e-10■□□□□ 9.9
LIN28BQ6ZN17 HNRNPU-206ENST00000465881 883 ntTSL 57.33□□□□□ -1.243e-10■□□□□ 9.9
LIN28BQ6ZN17 HNRNPU-220ENST00000639667 3940 ntTSL 26.33□□□□□ -1.43e-10■□□□□ 9.9
LIN28BQ6ZN17 HNRNPU-215ENST00000638589 2225 ntTSL 23.45□□□□□ -1.863e-10■□□□□ 9.9
LIN28BQ6ZN17 HECTD1-208ENST00000554882 3748 ntTSL 55.56□□□□□ -1.523e-7■□□□□ 9.9
LIN28BQ6ZN17 HECTD1-210ENST00000555843 4281 ntTSL 24.65□□□□□ -1.663e-7■□□□□ 9.9
LIN28BQ6ZN17 DPP4-208ENST00000491591 969 ntTSL 314.22□□□□□ -0.133e-6■□□□□ 9.9
LIN28BQ6ZN17 DPP4-206ENST00000468903 582 ntTSL 46.49□□□□□ -1.373e-6■□□□□ 9.9
LIN28BQ6ZN17 FGFR1-214ENST00000447712 5900 ntAPPRIS P3 TSL 1 (best) BASIC19.47■□□□□ 0.719e-8■□□□□ 9.9
LIN28BQ6ZN17 FGFR1-241ENST00000619564 5482 ntTSL 5 BASIC19.41■□□□□ 0.79e-8■□□□□ 9.9
LIN28BQ6ZN17 FGFR1-238ENST00000532791 5590 ntAPPRIS ALT1 TSL 5 BASIC18.61■□□□□ 0.579e-8■□□□□ 9.9
LIN28BQ6ZN17 FGFR1-203ENST00000341462 6054 ntTSL 5 BASIC18.07■□□□□ 0.489e-8■□□□□ 9.9
LIN28BQ6ZN17 FGFR1-206ENST00000397091 5702 ntAPPRIS ALT1 TSL 1 (best) BASIC17.16■□□□□ 0.349e-8■□□□□ 9.9
LIN28BQ6ZN17 FGFR1-202ENST00000335922 4157 ntTSL 1 (best) BASIC14.56□□□□□ -0.089e-8■□□□□ 9.9
LIN28BQ6ZN17 FGFR1-204ENST00000356207 3824 ntTSL 1 (best) BASIC14.48□□□□□ -0.099e-8■□□□□ 9.9
LIN28BQ6ZN17 FGFR1-201ENST00000326324 3816 ntTSL 1 (best) BASIC14.35□□□□□ -0.119e-8■□□□□ 9.9
LIN28BQ6ZN17 FGFR1-211ENST00000425967 5375 ntTSL 1 (best) BASIC12□□□□□ -0.499e-8■□□□□ 9.9
LIN28BQ6ZN17 FGFR1-208ENST00000397108 2870 ntAPPRIS ALT1 TSL 1 (best) BASIC11.94□□□□□ -0.59e-8■□□□□ 9.9
LIN28BQ6ZN17 FGFR1-227ENST00000526570 5528 ntTSL 1 (best)11.7□□□□□ -0.549e-8■□□□□ 9.9
LIN28BQ6ZN17 FGFR1-207ENST00000397103 2953 ntTSL 5 BASIC10.86□□□□□ -0.679e-8■□□□□ 9.9
LIN28BQ6ZN17 FGFR1-209ENST00000397113 3680 ntAPPRIS ALT1 TSL 2 BASIC9.47□□□□□ -0.899e-8■□□□□ 9.9
LIN28BQ6ZN17 CP-205ENST00000463556 590 ntTSL 23.31□□□□□ -1.882e-9■□□□□ 9.9
LIN28BQ6ZN17 COPZ1-207ENST00000549116 736 ntTSL 2 BASIC13.93□□□□□ -0.181e-7■□□□□ 9.9
LIN28BQ6ZN17 COPZ1-206ENST00000549043 1232 ntTSL 1 (best) BASIC13.78□□□□□ -0.21e-7■□□□□ 9.9
LIN28BQ6ZN17 COPZ1-204ENST00000548281 554 ntTSL 412.81□□□□□ -0.361e-7■□□□□ 9.9
LIN28BQ6ZN17 COPZ1-213ENST00000551962 578 ntTSL 512.69□□□□□ -0.381e-7■□□□□ 9.9
LIN28BQ6ZN17 COPZ1-214ENST00000552218 797 ntTSL 5 BASIC12.69□□□□□ -0.381e-7■□□□□ 9.9
LIN28BQ6ZN17 COPZ1-202ENST00000455864 880 ntTSL 2 BASIC12□□□□□ -0.491e-7■□□□□ 9.9
LIN28BQ6ZN17 COPZ1-201ENST00000262061 1897 ntAPPRIS P2 TSL 1 (best) BASIC11.3□□□□□ -0.61e-7■□□□□ 9.9
LIN28BQ6ZN17 COPZ1-209ENST00000550171 1026 ntTSL 210.65□□□□□ -0.71e-7■□□□□ 9.9
LIN28BQ6ZN17 COPZ1-212ENST00000551779 1462 ntAPPRIS ALT1 TSL 2 BASIC10.59□□□□□ -0.711e-7■□□□□ 9.9
LIN28BQ6ZN17 COPZ1-215ENST00000552362 575 ntTSL 4 BASIC9.79□□□□□ -0.841e-7■□□□□ 9.9
LIN28BQ6ZN17 COPZ1-218ENST00000553231 551 ntTSL 5 BASIC8.21□□□□□ -1.11e-7■□□□□ 9.9
LIN28BQ6ZN17 COPZ1-205ENST00000548753 778 ntTSL 3 BASIC7.48□□□□□ -1.211e-7■□□□□ 9.9
LIN28BQ6ZN17 PSMA6-207ENST00000554620 790 ntTSL 59.26□□□□□ -0.935e-6■□□□□ 9.9
LIN28BQ6ZN17 PSMA6-203ENST00000553688 787 ntTSL 58.62□□□□□ -1.035e-6■□□□□ 9.9
LIN28BQ6ZN17 XRCC6-202ENST00000360079 2296 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.043e-8■□□□□ 9.9
LIN28BQ6ZN17 XRCC6-201ENST00000359308 2709 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.213e-8■□□□□ 9.9
LIN28BQ6ZN17 XRCC6-203ENST00000402580 2006 ntTSL 2 BASIC11.33□□□□□ -0.63e-8■□□□□ 9.9
LIN28BQ6ZN17 XRCC6-206ENST00000428575 2148 ntTSL 2 BASIC11.07□□□□□ -0.643e-8■□□□□ 9.9
LIN28BQ6ZN17 XRCC6-204ENST00000405506 1958 ntTSL 5 BASIC10.67□□□□□ -0.73e-8■□□□□ 9.9
LIN28BQ6ZN17 XRCC6-205ENST00000405878 2200 ntAPPRIS P1 TSL 5 BASIC10.4□□□□□ -0.743e-8■□□□□ 9.9
LIN28BQ6ZN17 AKIRIN1-201ENST00000372984 1330 ntTSL 2 BASIC20.98■□□□□ 0.952e-9■□□□□ 9.9
LIN28BQ6ZN17 AKIRIN1-203ENST00000446189 1243 ntTSL 2 BASIC19.08■□□□□ 0.642e-9■□□□□ 9.9
LIN28BQ6ZN17 CBFA2T3-204ENST00000563640 664 ntTSL 217.91■□□□□ 0.462e-9■□□□□ 9.9
LIN28BQ6ZN17 AKIRIN1-202ENST00000432648 2741 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.332e-9■□□□□ 9.9
LIN28BQ6ZN17 MTHFD1L-211ENST00000611279 3475 ntAPPRIS ALT1 TSL 5 BASIC15.78■□□□□ 0.123e-7■□□□□ 9.9
LIN28BQ6ZN17 MTHFD1L-203ENST00000367321 3604 ntAPPRIS P3 TSL 1 (best) BASIC15.58■□□□□ 0.083e-7■□□□□ 9.9
LIN28BQ6ZN17 TGM2-204ENST00000468262 1862 ntTSL 1 (best)15.37■□□□□ 0.052e-9■□□□□ 9.9
LIN28BQ6ZN17 MARCH6-203ENST00000502795 580 ntTSL 415.23■□□□□ 0.032e-9■□□□□ 9.9
LIN28BQ6ZN17 MYLIP-201ENST00000349606 2796 ntTSL 1 (best) BASIC14.78□□□□□ -0.043e-7■□□□□ 9.9
LIN28BQ6ZN17 DCTN2-215ENST00000550201 1527 ntTSL 514.1□□□□□ -0.153e-7■□□□□ 9.9
LIN28BQ6ZN17 MARCH6-209ENST00000510872 577 ntTSL 413.99□□□□□ -0.172e-9■□□□□ 9.9
LIN28BQ6ZN17 PRDX4-201ENST00000379331 852 ntTSL 2 BASIC13.67□□□□□ -0.223e-7■□□□□ 9.9
LIN28BQ6ZN17 MARCH6-206ENST00000506131 311 ntTSL 513.41□□□□□ -0.262e-9■□□□□ 9.9
LIN28BQ6ZN17 CBFA2T3-201ENST00000268679 4477 ntAPPRIS P4 TSL 1 (best) BASIC13.41□□□□□ -0.262e-9■□□□□ 9.9
LIN28BQ6ZN17 PGD-209ENST00000496718 506 ntTSL 213.35□□□□□ -0.273e-7■□□□□ 9.9
LIN28BQ6ZN17 TGM2-201ENST00000361475 5070 ntAPPRIS P1 TSL 1 (best) BASIC13.1□□□□□ -0.312e-9■□□□□ 9.9
LIN28BQ6ZN17 DCTN2-212ENST00000549394 1439 ntTSL 212.89□□□□□ -0.353e-7■□□□□ 9.9
LIN28BQ6ZN17 SUPT6H-209ENST00000583972 1969 ntTSL 212.76□□□□□ -0.373e-7■□□□□ 9.9
LIN28BQ6ZN17 DCTN2-201ENST00000434715 1677 ntTSL 5 BASIC12.17□□□□□ -0.463e-7■□□□□ 9.9
Retrieved 100 of 21,972 protein–RNA pairs in 290.4 ms