RNA–Protein interactions for RNA: ENST00000482042.1

CTNNB1-213, Transcript of catenin beta 1, humanhuman

TSL 2

Gene CTNNB1, Length 1,366 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTNNB1-213ENST00000482042 AEBP2Q6ZN18 517 aaPredicted RBP27.47■■□□□ 1.99
CTNNB1-213ENST00000482042 CHIC1Q5VXU3 224 aa26.49■■□□□ 1.83
CTNNB1-213ENST00000482042 SENP3Q9H4L4 574 aaPredicted RBP23.39■■□□□ 1.33
CTNNB1-213ENST00000482042 PHF23Q9BUL5 403 aaPredicted RBP23.24■■□□□ 1.31
CTNNB1-213ENST00000482042 FOXD1Q16676 465 aa21.72■■□□□ 1.07
CTNNB1-213ENST00000482042 PLPPR3Q6T4P5 718 aa21.35■■□□□ 1.01
CTNNB1-213ENST00000482042 PPP6R1Q9UPN7 881 aa20.6■□□□□ 0.89
CTNNB1-213ENST00000482042 ADRA2BP18089 450 aa20.55■□□□□ 0.88
CTNNB1-213ENST00000482042 PIAS4Q8N2W9 510 aaPredicted RBP20.38■□□□□ 0.85
CTNNB1-213ENST00000482042 MSH5O43196 834 aa20.2■□□□□ 0.82
CTNNB1-213ENST00000482042 POTEDQ86YR6 584 aa19.24■□□□□ 0.67
CTNNB1-213ENST00000482042 SCAF1Q9H7N4 1312 aaKnown RBP18.83■□□□□ 0.6
CTNNB1-213ENST00000482042 MAPK8IP2Q13387 824 aaPredicted RBP18.74■□□□□ 0.59
CTNNB1-213ENST00000482042 PPP4R3CPQ6ZMV5 832 aa18.74■□□□□ 0.59
CTNNB1-213ENST00000482042 DMRT2Q9Y5R5 561 aa18.61■□□□□ 0.57
CTNNB1-213ENST00000482042 CNKSR2Q8WXI2 1034 aa18.32■□□□□ 0.52
CTNNB1-213ENST00000482042 NCBP3Q53F19 620 aaKnown RBP18.15■□□□□ 0.5
CTNNB1-213ENST00000482042 HOXD11P31277 338 aaPredicted RBP18.1■□□□□ 0.49
CTNNB1-213ENST00000482042 RNF216Q9NWF9 866 aaPredicted RBP18.05■□□□□ 0.48
CTNNB1-213ENST00000482042 KCNA4P22459 653 aa17.9■□□□□ 0.46
CTNNB1-213ENST00000482042 NPM3O75607 178 aaKnown RBP17.89■□□□□ 0.45
CTNNB1-213ENST00000482042 DCAF8L1A6NGE4 600 aa17.73■□□□□ 0.43
CTNNB1-213ENST00000482042 DNAJC5BQ9UF47 199 aa17.53■□□□□ 0.4
CTNNB1-213ENST00000482042 RNF39Q9H2S5 420 aa17.28■□□□□ 0.36
CTNNB1-213ENST00000482042 GRWD1Q9BQ67 446 aaKnown RBP eCLIP17.18■□□□□ 0.341e-6■□□□□ 8.5
CTNNB1-213ENST00000482042 CACNB1Q02641 598 aaPredicted RBP17.1■□□□□ 0.33
CTNNB1-213ENST00000482042 C1QBPQ07021 282 aaKnown RBP17.04■□□□□ 0.32
CTNNB1-213ENST00000482042 SLC4A2P04920 1241 aa16.99■□□□□ 0.31
CTNNB1-213ENST00000482042 SLC4A1APQ9BWU0 796 aaKnown RBP16.97■□□□□ 0.31
CTNNB1-213ENST00000482042 U3KPZ7 1027 aaPredicted RBP16.9■□□□□ 0.3
CTNNB1-213ENST00000482042 FOXD4L1Q9NU39 408 aa16.6■□□□□ 0.25
CTNNB1-213ENST00000482042 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.57■□□□□ 0.24
CTNNB1-213ENST00000482042 HNRNPUL2Q1KMD3 747 aaKnown RBP16.57■□□□□ 0.24
CTNNB1-213ENST00000482042 MYCNP04198 464 aaPredicted RBP16.55■□□□□ 0.24
CTNNB1-213ENST00000482042 SPINK5Q9NQ38 1064 aaPredicted RBP16.51■□□□□ 0.23
CTNNB1-213ENST00000482042 SAMD1Q6SPF0 538 aaPredicted RBP16.5■□□□□ 0.23
CTNNB1-213ENST00000482042 APLP2Q06481 763 aa16.49■□□□□ 0.23
CTNNB1-213ENST00000482042 ZBTB22O15209 634 aa16.48■□□□□ 0.23
CTNNB1-213ENST00000482042 CAPN15O75808 1086 aa16.44■□□□□ 0.22
CTNNB1-213ENST00000482042 ZNF219Q9P2Y4 722 aaPredicted RBP16.32■□□□□ 0.2
CTNNB1-213ENST00000482042 DSG3P32926 999 aa16.3■□□□□ 0.2
CTNNB1-213ENST00000482042 TRHP20396 242 aaPredicted RBP16.26■□□□□ 0.19
CTNNB1-213ENST00000482042 ATF5Q9Y2D1 282 aaPredicted RBP16.11■□□□□ 0.17
CTNNB1-213ENST00000482042 ABCB7O75027 752 aa16.1■□□□□ 0.17
CTNNB1-213ENST00000482042 ATXN8OSP0DMR3 200 aa16.08■□□□□ 0.16
CTNNB1-213ENST00000482042 CSRNP3Q8WYN3 585 aa16.07■□□□□ 0.16
CTNNB1-213ENST00000482042 EHMT2Q96KQ7 1210 aa16.02■□□□□ 0.16
CTNNB1-213ENST00000482042 POLA2Q14181 598 aa15.94■□□□□ 0.14
CTNNB1-213ENST00000482042 NISCHQ9Y2I1 1504 aa15.89■□□□□ 0.13
CTNNB1-213ENST00000482042 ZBTB12Q9Y330 459 aaPredicted RBP15.71■□□□□ 0.11
CTNNB1-213ENST00000482042 RBM42Q9BTD8 480 aaKnown RBP15.56■□□□□ 0.08
CTNNB1-213ENST00000482042 FBLN2P98095 1184 aa15.46■□□□□ 0.07
CTNNB1-213ENST00000482042 OSCARQ8IYS5 282 aa15.44■□□□□ 0.06
CTNNB1-213ENST00000482042 MKRN4PQ13434 485 aaPredicted RBP15.41■□□□□ 0.06
CTNNB1-213ENST00000482042 AKT1S1Q96B36 256 aa15.28■□□□□ 0.04
CTNNB1-213ENST00000482042 SPDYE2BA6NHP3 402 aa15.25■□□□□ 0.03
CTNNB1-213ENST00000482042 SPDYE6P0CI01 402 aa15.25■□□□□ 0.03
CTNNB1-213ENST00000482042 SPDYE2Q495Y8 402 aa15.25■□□□□ 0.03
CTNNB1-213ENST00000482042 POTEHQ6S545 545 aa15.11■□□□□ 0.01
CTNNB1-213ENST00000482042 REM2Q8IYK8 340 aaPredicted RBP15.11■□□□□ 0.01
CTNNB1-213ENST00000482042 SSUH2Q9Y2M2 353 aa15.11■□□□□ 0.01
CTNNB1-213ENST00000482042 ZNF692Q9BU19 519 aaPredicted RBP15.09■□□□□ 0.01
CTNNB1-213ENST00000482042 CHRDL2Q6WN34 429 aa15.03■□□□□ -0
CTNNB1-213ENST00000482042 PITPNM1O00562 1244 aa14.95□□□□□ -0.02
CTNNB1-213ENST00000482042 PABPN1Q86U42 306 aaKnown RBP eCLIP14.87□□□□□ -0.03
CTNNB1-213ENST00000482042 SPDYE1Q8NFV5 336 aaPredicted RBP14.87□□□□□ -0.03
CTNNB1-213ENST00000482042 SPDYE4A6NLX3 237 aa14.86□□□□□ -0.03
CTNNB1-213ENST00000482042 FXR2P51116 673 aaKnown RBP eCLIP14.76□□□□□ -0.05
CTNNB1-213ENST00000482042 PIP4P2Q8N4L2 257 aa14.76□□□□□ -0.05
CTNNB1-213ENST00000482042 CLEC11AQ9Y240 323 aa14.76□□□□□ -0.05
CTNNB1-213ENST00000482042 PROM2Q8N271 834 aa14.64□□□□□ -0.07
CTNNB1-213ENST00000482042 PRR29P0C7W0 189 aa14.6□□□□□ -0.07
CTNNB1-213ENST00000482042 STAG3Q9UJ98 1225 aa14.6□□□□□ -0.07
CTNNB1-213ENST00000482042 PRKAR2AP13861 404 aaKnown RBP14.56□□□□□ -0.08
CTNNB1-213ENST00000482042 FKBP8Q14318 412 aa14.52□□□□□ -0.08
CTNNB1-213ENST00000482042 CHADLQ6NUI6 762 aa14.46□□□□□ -0.1
CTNNB1-213ENST00000482042 CREBZFQ9NS37 354 aa14.36□□□□□ -0.11
CTNNB1-213ENST00000482042 HAX1O00165 279 aa14.34□□□□□ -0.11
CTNNB1-213ENST00000482042 FARP1Q9Y4F1 1045 aaPredicted RBP14.32□□□□□ -0.12
CTNNB1-213ENST00000482042 C19orf67A6NJJ6 358 aa14.27□□□□□ -0.12
CTNNB1-213ENST00000482042 SP7Q8TDD2 431 aaPredicted RBP14.26□□□□□ -0.13
CTNNB1-213ENST00000482042 CCDC180Q9P1Z9 1646 aa14.23□□□□□ -0.13
CTNNB1-213ENST00000482042 EVX2Q03828 476 aa14.21□□□□□ -0.14
CTNNB1-213ENST00000482042 MNX1P50219 401 aaPredicted RBP14.19□□□□□ -0.14
CTNNB1-213ENST00000482042 FBXO3Q9UK99 471 aa14.14□□□□□ -0.15
CTNNB1-213ENST00000482042 CD44P16070 742 aaKnown RBP14.12□□□□□ -0.15
CTNNB1-213ENST00000482042 NPM1P06748 294 aaKnown RBP eCLIP14.11□□□□□ -0.15
CTNNB1-213ENST00000482042 MIER1Q8N108 512 aa14.09□□□□□ -0.15
CTNNB1-213ENST00000482042 PLEKHG5O94827 1062 aa14.09□□□□□ -0.15
CTNNB1-213ENST00000482042 PLCD3Q8N3E9 789 aa14.06□□□□□ -0.16
CTNNB1-213ENST00000482042 ZNF579Q8NAF0 562 aaKnown RBP13.96□□□□□ -0.17
CTNNB1-213ENST00000482042 ZBTB47Q9UFB7 747 aaPredicted RBP13.96□□□□□ -0.17
CTNNB1-213ENST00000482042 ZRANB1Q9UGI0 708 aa13.96□□□□□ -0.17
CTNNB1-213ENST00000482042 PAK3O75914 559 aaPredicted RBP13.96□□□□□ -0.18
CTNNB1-213ENST00000482042 VASPP50552 380 aaPredicted RBP13.96□□□□□ -0.18
CTNNB1-213ENST00000482042 GABBR2O75899 941 aa13.93□□□□□ -0.18
CTNNB1-213ENST00000482042 CLCN6P51797 869 aa13.91□□□□□ -0.18
CTNNB1-213ENST00000482042 RASEFQ8IZ41 740 aa13.84□□□□□ -0.19
CTNNB1-213ENST00000482042 NUBP1P53384 320 aa13.83□□□□□ -0.19
CTNNB1-213ENST00000482042 TSPYL2Q9H2G4 693 aaPredicted RBP13.83□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 16.2 ms