RNA–Protein interactions for RNA: ENST00000272322.8

VPS54-201, Transcript of VPS54, GARP complex subunit, humanhuman

APPRIS P3 TSL 5 BASIC

Gene VPS54, Length 3,463 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-201ENST00000272322 NISCHQ9Y2I1 1504 aa33.86■■■■□ 3.01
VPS54-201ENST00000272322 SHROOM4Q9ULL8 1493 aa29.98■■■□□ 2.39
VPS54-201ENST00000272322 DCAF8L2P0C7V8 631 aa29.59■■■□□ 2.33
VPS54-201ENST00000272322 SUPT5HO00267 1087 aaKnown RBP29.42■■■□□ 2.3
VPS54-201ENST00000272322 ZCCHC6Q5VYS8 1495 aaKnown RBP28.5■■■□□ 2.15
VPS54-201ENST00000272322 CCDC180Q9P1Z9 1646 aa28.25■■■□□ 2.11
VPS54-201ENST00000272322 CHIC1Q5VXU3 224 aa28.04■■■□□ 2.08
VPS54-201ENST00000272322 MYO15BQ96JP2 1530 aa27.79■■■□□ 2.04
VPS54-201ENST00000272322 LOC105371045A0A1W2PR82 267 aa27.65■■■□□ 2.02
VPS54-201ENST00000272322 EHMT2Q96KQ7 1210 aa27.57■■■□□ 2
VPS54-201ENST00000272322 PCGF6Q9BYE7 350 aa27.53■■■□□ 2
VPS54-201ENST00000272322 ABCC9O60706 1549 aa27.42■■□□□ 1.98
VPS54-201ENST00000272322 FAM9AQ8IZU1 332 aaPredicted RBP27.38■■□□□ 1.97
VPS54-201ENST00000272322 SCRIBQ14160 1630 aa27.32■■□□□ 1.96
VPS54-201ENST00000272322 DCAF1Q9Y4B6 1507 aa27.25■■□□□ 1.95
VPS54-201ENST00000272322 TRIM41Q8WV44 630 aa27.09■■□□□ 1.93
VPS54-201ENST00000272322 PPARGC1BQ86YN6 1023 aaKnown RBP27.03■■□□□ 1.92
VPS54-201ENST00000272322 RSF1Q96T23 1441 aaPredicted RBP27■■□□□ 1.91
VPS54-201ENST00000272322 HRCP23327 699 aa26.98■■□□□ 1.91
VPS54-201ENST00000272322 CECR2Q9BXF3 1484 aa26.83■■□□□ 1.89
VPS54-201ENST00000272322 RB1CC1Q8TDY2 1594 aa26.68■■□□□ 1.86
VPS54-201ENST00000272322 PABPN1Q86U42 306 aaKnown RBP eCLIP26.6■■□□□ 1.858e-7■□□□□ 9.2
VPS54-201ENST00000272322 TTBK1Q5TCY1 1321 aaPredicted RBP26.55■■□□□ 1.84
VPS54-201ENST00000272322 MROH2BQ7Z745 1585 aa26.55■■□□□ 1.84
VPS54-201ENST00000272322 TRIM26Q12899 539 aaPredicted RBP26.53■■□□□ 1.84
VPS54-201ENST00000272322 NACADO15069 1562 aa26.43■■□□□ 1.82
VPS54-201ENST00000272322 WIZO95785 1651 aa26.36■■□□□ 1.81
VPS54-201ENST00000272322 RANGAP1P46060 587 aaPredicted RBP26.06■■□□□ 1.76
VPS54-201ENST00000272322 UBTFP17480 764 aaKnown RBP25.99■■□□□ 1.75
VPS54-201ENST00000272322 ABCC8Q09428 1581 aa25.99■■□□□ 1.75
VPS54-201ENST00000272322 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP25.98■■□□□ 1.75
VPS54-201ENST00000272322 BAZ1AQ9NRL2 1556 aaPredicted RBP25.94■■□□□ 1.74
VPS54-201ENST00000272322 CCDC88BA6NC98 1476 aa25.9■■□□□ 1.74
VPS54-201ENST00000272322 SOGA1O94964 1423 aa25.82■■□□□ 1.72
VPS54-201ENST00000272322 CCER1Q8TC90 406 aaPredicted RBP25.8■■□□□ 1.72
VPS54-201ENST00000272322 SMARCA4P51532 1647 aa25.73■■□□□ 1.71
VPS54-201ENST00000272322 RUSC2Q8N2Y8 1516 aa25.72■■□□□ 1.71
VPS54-201ENST00000272322 CSRNP3Q8WYN3 585 aa25.7■■□□□ 1.7
VPS54-201ENST00000272322 ZEB1P37275 1124 aaPredicted RBP25.68■■□□□ 1.7
VPS54-201ENST00000272322 TOP2AP11388 1531 aaKnown RBP25.66■■□□□ 1.7
VPS54-201ENST00000272322 UNC13AQ9UPW8 1703 aa25.61■■□□□ 1.69
VPS54-201ENST00000272322 SMARCA2P51531 1590 aa25.61■■□□□ 1.69
VPS54-201ENST00000272322 CEP162Q5TB80 1403 aa25.52■■□□□ 1.68
VPS54-201ENST00000272322 HNRNPUL2Q1KMD3 747 aaKnown RBP25.49■■□□□ 1.67
VPS54-201ENST00000272322 BICRAQ9NZM4 1560 aa25.46■■□□□ 1.67
VPS54-201ENST00000272322 EIF4G1Q04637 1599 aaKnown RBP25.44■■□□□ 1.66
VPS54-201ENST00000272322 WRNQ14191 1432 aaPredicted RBP eCLIP25.43■■□□□ 1.66
VPS54-201ENST00000272322 BAZ1BQ9UIG0 1483 aaKnown RBP25.31■■□□□ 1.64
VPS54-201ENST00000272322 TNIKQ9UKE5 1360 aa25.3■■□□□ 1.64
VPS54-201ENST00000272322 ATAD2BQ9ULI0 1458 aa25.29■■□□□ 1.64
VPS54-201ENST00000272322 APLP2Q06481 763 aa25.28■■□□□ 1.64
VPS54-201ENST00000272322 GOLGA3Q08378 1498 aa25.16■■□□□ 1.62
VPS54-201ENST00000272322 SYNJ1O43426 1573 aa25.15■■□□□ 1.62
VPS54-201ENST00000272322 CLIP1P30622 1438 aa25.1■■□□□ 1.61
VPS54-201ENST00000272322 DIEXFQ68CQ4 756 aaKnown RBP25.09■■□□□ 1.61
VPS54-201ENST00000272322 RAPGEF2Q9Y4G8 1499 aa25.07■■□□□ 1.6
VPS54-201ENST00000272322 EEA1Q15075 1411 aa25.07■■□□□ 1.6
VPS54-201ENST00000272322 ITGAEP38570 1179 aa25.06■■□□□ 1.6
VPS54-201ENST00000272322 YTHDC1Q96MU7 727 aaKnown RBP25■■□□□ 1.59
VPS54-201ENST00000272322 SCAF1Q9H7N4 1312 aaKnown RBP25■■□□□ 1.59
VPS54-201ENST00000272322 CEP164Q9UPV0 1460 aa24.99■■□□□ 1.59
VPS54-201ENST00000272322 ATP1B4Q9UN42 357 aaPredicted RBP24.95■■□□□ 1.58
VPS54-201ENST00000272322 KANK4Q5T7N3 995 aaPredicted RBP24.89■■□□□ 1.57
VPS54-201ENST00000272322 PEG3Q9GZU2 1588 aa24.88■■□□□ 1.57
VPS54-201ENST00000272322 P3H3Q8IVL6 736 aa24.88■■□□□ 1.57
VPS54-201ENST00000272322 NEUROD1Q13562 356 aa24.86■■□□□ 1.57
VPS54-201ENST00000272322 VPS8Q8N3P4 1428 aa24.79■■□□□ 1.56
VPS54-201ENST00000272322 ZNF316A6NFI3 1004 aaPredicted RBP24.77■■□□□ 1.56
VPS54-201ENST00000272322 ACIN1Q9UKV3 1341 aaKnown RBP24.67■■□□□ 1.54
VPS54-201ENST00000272322 KIF21BO75037 1637 aa24.66■■□□□ 1.54
VPS54-201ENST00000272322 GTF3C3Q9Y5Q9 886 aa24.65■■□□□ 1.54
VPS54-201ENST00000272322 NCAPD3P42695 1498 aa24.64■■□□□ 1.54
VPS54-201ENST00000272322 CUX1P39880 1505 aa24.64■■□□□ 1.53
VPS54-201ENST00000272322 MIER1Q8N108 512 aa24.63■■□□□ 1.53
VPS54-201ENST00000272322 KIF27Q86VH2 1401 aa24.62■■□□□ 1.53
VPS54-201ENST00000272322 TOP2BQ02880 1626 aa24.61■■□□□ 1.53
VPS54-201ENST00000272322 CUX2O14529 1486 aa24.56■■□□□ 1.52
VPS54-201ENST00000272322 CENPBP07199 599 aaPredicted RBP24.56■■□□□ 1.52
VPS54-201ENST00000272322 ARAP1Q96P48 1450 aa24.54■■□□□ 1.52
VPS54-201ENST00000272322 FAM50AQ14320 339 aaKnown RBP24.53■■□□□ 1.52
VPS54-201ENST00000272322 PRXQ9BXM0 1461 aa24.51■■□□□ 1.51
VPS54-201ENST00000272322 DNAJC5BQ9UF47 199 aa24.51■■□□□ 1.51
VPS54-201ENST00000272322 CFTRP13569 1480 aa24.49■■□□□ 1.51
VPS54-201ENST00000272322 IGF1RP08069 1367 aa24.44■■□□□ 1.5
VPS54-201ENST00000272322 CADPSQ9ULU8 1353 aa24.44■■□□□ 1.5
VPS54-201ENST00000272322 CARMIL1Q5VZK9 1371 aa24.41■■□□□ 1.5
VPS54-201ENST00000272322 HMGXB3Q12766 1538 aa24.4■■□□□ 1.5
VPS54-201ENST00000272322 ARID3CA6NKF2 412 aa24.36■■□□□ 1.49
VPS54-201ENST00000272322 ARHGAP35Q9NRY4 1499 aa24.35■■□□□ 1.49
VPS54-201ENST00000272322 BIVM-ERCC5R4GMW8 1640 aa24.34■■□□□ 1.49
VPS54-201ENST00000272322 NESP48681 1621 aa24.33■■□□□ 1.49
VPS54-201ENST00000272322 FGD5Q6ZNL6 1462 aa24.33■■□□□ 1.49
VPS54-201ENST00000272322 RAD54L2Q9Y4B4 1467 aa24.33■■□□□ 1.49
VPS54-201ENST00000272322 DHX57Q6P158 1386 aaKnown RBP24.32■■□□□ 1.48
VPS54-201ENST00000272322 HIRIP3Q9BW71 556 aaPredicted RBP24.29■■□□□ 1.48
VPS54-201ENST00000272322 CCNB3Q8WWL7 1395 aa24.29■■□□□ 1.48
VPS54-201ENST00000272322 SIN3AQ96ST3 1273 aa24.27■■□□□ 1.48
VPS54-201ENST00000272322 ERICH3Q5RHP9 1530 aa24.26■■□□□ 1.47
VPS54-201ENST00000272322 TDRD9Q8NDG6 1382 aaKnown RBP24.22■■□□□ 1.47
VPS54-201ENST00000272322 CC2D2AQ9P2K1 1620 aa24.22■■□□□ 1.47
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms