RNA–Protein interactions for RNA: ENST00000409558.8

VPS54-203, Transcript of VPS54, GARP complex subunit, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene VPS54, Length 4,337 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-203ENST00000409558 NISCHQ9Y2I1 1504 aa27.04■■□□□ 1.92
VPS54-203ENST00000409558 SHROOM4Q9ULL8 1493 aa24.21■■□□□ 1.47
VPS54-203ENST00000409558 DCAF8L2P0C7V8 631 aa24■■□□□ 1.43
VPS54-203ENST00000409558 SUPT5HO00267 1087 aaKnown RBP23.76■■□□□ 1.39
VPS54-203ENST00000409558 ZCCHC6Q5VYS8 1495 aaKnown RBP22.73■■□□□ 1.23
VPS54-203ENST00000409558 CHIC1Q5VXU3 224 aa22.48■■□□□ 1.19
VPS54-203ENST00000409558 CCDC180Q9P1Z9 1646 aa22.47■■□□□ 1.19
VPS54-203ENST00000409558 EHMT2Q96KQ7 1210 aa22.41■■□□□ 1.18
VPS54-203ENST00000409558 LOC105371045A0A1W2PR82 267 aa22.26■■□□□ 1.15
VPS54-203ENST00000409558 MYO15BQ96JP2 1530 aa22.24■■□□□ 1.15
VPS54-203ENST00000409558 PCGF6Q9BYE7 350 aa22.17■■□□□ 1.14
VPS54-203ENST00000409558 FAM9AQ8IZU1 332 aaPredicted RBP22.16■■□□□ 1.14
VPS54-203ENST00000409558 ABCC9O60706 1549 aa22.09■■□□□ 1.13
VPS54-203ENST00000409558 SCRIBQ14160 1630 aa21.92■■□□□ 1.1
VPS54-203ENST00000409558 TRIM41Q8WV44 630 aa21.81■■□□□ 1.08
VPS54-203ENST00000409558 PPARGC1BQ86YN6 1023 aaKnown RBP21.75■■□□□ 1.07
VPS54-203ENST00000409558 DCAF1Q9Y4B6 1507 aa21.64■■□□□ 1.05
VPS54-203ENST00000409558 HRCP23327 699 aa21.6■■□□□ 1.05
VPS54-203ENST00000409558 RSF1Q96T23 1441 aaPredicted RBP21.59■■□□□ 1.05
VPS54-203ENST00000409558 TTBK1Q5TCY1 1321 aaPredicted RBP21.56■■□□□ 1.04
VPS54-203ENST00000409558 CECR2Q9BXF3 1484 aa21.49■■□□□ 1.03
VPS54-203ENST00000409558 PABPN1Q86U42 306 aaKnown RBP eCLIP21.49■■□□□ 1.038e-7■□□□□ 9.2
VPS54-203ENST00000409558 RB1CC1Q8TDY2 1594 aa21.35■■□□□ 1.01
VPS54-203ENST00000409558 TRIM26Q12899 539 aaPredicted RBP21.28■■□□□ 1
VPS54-203ENST00000409558 MROH2BQ7Z745 1585 aa21.24■□□□□ 0.99
VPS54-203ENST00000409558 RANGAP1P46060 587 aaPredicted RBP21.16■□□□□ 0.98
VPS54-203ENST00000409558 WIZO95785 1651 aa21.09■□□□□ 0.97
VPS54-203ENST00000409558 NACADO15069 1562 aa21.08■□□□□ 0.97
VPS54-203ENST00000409558 UBTFP17480 764 aaKnown RBP20.98■□□□□ 0.95
VPS54-203ENST00000409558 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP20.93■□□□□ 0.94
VPS54-203ENST00000409558 ABCC8Q09428 1581 aa20.84■□□□□ 0.93
VPS54-203ENST00000409558 CCER1Q8TC90 406 aaPredicted RBP20.8■□□□□ 0.92
VPS54-203ENST00000409558 CCDC88BA6NC98 1476 aa20.73■□□□□ 0.91
VPS54-203ENST00000409558 BAZ1AQ9NRL2 1556 aaPredicted RBP20.72■□□□□ 0.91
VPS54-203ENST00000409558 SOGA1O94964 1423 aa20.7■□□□□ 0.9
VPS54-203ENST00000409558 CSRNP3Q8WYN3 585 aa20.63■□□□□ 0.89
VPS54-203ENST00000409558 RUSC2Q8N2Y8 1516 aa20.61■□□□□ 0.89
VPS54-203ENST00000409558 HNRNPUL2Q1KMD3 747 aaKnown RBP20.59■□□□□ 0.89
VPS54-203ENST00000409558 ZEB1P37275 1124 aaPredicted RBP20.57■□□□□ 0.88
VPS54-203ENST00000409558 SMARCA4P51532 1647 aa20.54■□□□□ 0.88
VPS54-203ENST00000409558 TOP2AP11388 1531 aaKnown RBP20.48■□□□□ 0.87
VPS54-203ENST00000409558 SMARCA2P51531 1590 aa20.45■□□□□ 0.86
VPS54-203ENST00000409558 CEP162Q5TB80 1403 aa20.45■□□□□ 0.86
VPS54-203ENST00000409558 APLP2Q06481 763 aa20.42■□□□□ 0.86
VPS54-203ENST00000409558 UNC13AQ9UPW8 1703 aa20.41■□□□□ 0.86
VPS54-203ENST00000409558 WRNQ14191 1432 aaPredicted RBP eCLIP20.38■□□□□ 0.85
VPS54-203ENST00000409558 BICRAQ9NZM4 1560 aa20.31■□□□□ 0.84
VPS54-203ENST00000409558 BAZ1BQ9UIG0 1483 aaKnown RBP20.3■□□□□ 0.84
VPS54-203ENST00000409558 ITGAEP38570 1179 aa20.29■□□□□ 0.84
VPS54-203ENST00000409558 ATP1B4Q9UN42 357 aaPredicted RBP20.25■□□□□ 0.83
VPS54-203ENST00000409558 YTHDC1Q96MU7 727 aaKnown RBP20.23■□□□□ 0.83
VPS54-203ENST00000409558 ATAD2BQ9ULI0 1458 aa20.23■□□□□ 0.83
VPS54-203ENST00000409558 TNIKQ9UKE5 1360 aa20.22■□□□□ 0.83
VPS54-203ENST00000409558 EIF4G1Q04637 1599 aaKnown RBP20.21■□□□□ 0.83
VPS54-203ENST00000409558 DIEXFQ68CQ4 756 aaKnown RBP20.17■□□□□ 0.82
VPS54-203ENST00000409558 GOLGA3Q08378 1498 aa20.14■□□□□ 0.81
VPS54-203ENST00000409558 CLIP1P30622 1438 aa20.14■□□□□ 0.81
VPS54-203ENST00000409558 P3H3Q8IVL6 736 aa20.12■□□□□ 0.81
VPS54-203ENST00000409558 SYNJ1O43426 1573 aa20.11■□□□□ 0.81
VPS54-203ENST00000409558 RAPGEF2Q9Y4G8 1499 aa20.09■□□□□ 0.81
VPS54-203ENST00000409558 SCAF1Q9H7N4 1312 aaKnown RBP20.04■□□□□ 0.8
VPS54-203ENST00000409558 EEA1Q15075 1411 aa20.01■□□□□ 0.79
VPS54-203ENST00000409558 CEP164Q9UPV0 1460 aa19.99■□□□□ 0.79
VPS54-203ENST00000409558 KANK4Q5T7N3 995 aaPredicted RBP19.99■□□□□ 0.79
VPS54-203ENST00000409558 NEUROD1Q13562 356 aa19.95■□□□□ 0.78
VPS54-203ENST00000409558 ZNF316A6NFI3 1004 aaPredicted RBP19.88■□□□□ 0.77
VPS54-203ENST00000409558 VPS8Q8N3P4 1428 aa19.83■□□□□ 0.76
VPS54-203ENST00000409558 GTF3C3Q9Y5Q9 886 aa19.82■□□□□ 0.76
VPS54-203ENST00000409558 FAM50AQ14320 339 aaKnown RBP19.81■□□□□ 0.76
VPS54-203ENST00000409558 MIER1Q8N108 512 aa19.79■□□□□ 0.76
VPS54-203ENST00000409558 ACIN1Q9UKV3 1341 aaKnown RBP19.77■□□□□ 0.76
VPS54-203ENST00000409558 PEG3Q9GZU2 1588 aa19.77■□□□□ 0.75
VPS54-203ENST00000409558 ARID3CA6NKF2 412 aa19.77■□□□□ 0.75
VPS54-203ENST00000409558 CENPBP07199 599 aaPredicted RBP19.75■□□□□ 0.75
VPS54-203ENST00000409558 DNAJC5BQ9UF47 199 aa19.75■□□□□ 0.75
VPS54-203ENST00000409558 KIF27Q86VH2 1401 aa19.74■□□□□ 0.75
VPS54-203ENST00000409558 CUX2O14529 1486 aa19.73■□□□□ 0.75
VPS54-203ENST00000409558 KIF21BO75037 1637 aa19.71■□□□□ 0.75
VPS54-203ENST00000409558 CUX1P39880 1505 aa19.7■□□□□ 0.74
VPS54-203ENST00000409558 NCAPD3P42695 1498 aa19.67■□□□□ 0.74
VPS54-203ENST00000409558 ARAP1Q96P48 1450 aa19.64■□□□□ 0.73
VPS54-203ENST00000409558 TOP2BQ02880 1626 aa19.63■□□□□ 0.73
VPS54-203ENST00000409558 HIRIP3Q9BW71 556 aaPredicted RBP19.63■□□□□ 0.73
VPS54-203ENST00000409558 CARMIL1Q5VZK9 1371 aa19.59■□□□□ 0.73
VPS54-203ENST00000409558 CADPSQ9ULU8 1353 aa19.58■□□□□ 0.73
VPS54-203ENST00000409558 IGF1RP08069 1367 aa19.56■□□□□ 0.72
VPS54-203ENST00000409558 PRXQ9BXM0 1461 aa19.56■□□□□ 0.72
VPS54-203ENST00000409558 CFTRP13569 1480 aa19.56■□□□□ 0.72
VPS54-203ENST00000409558 NESP48681 1621 aa19.55■□□□□ 0.72
VPS54-203ENST00000409558 RAD54L2Q9Y4B4 1467 aa19.54■□□□□ 0.72
VPS54-203ENST00000409558 SIN3AQ96ST3 1273 aa19.53■□□□□ 0.72
VPS54-203ENST00000409558 FGD5Q6ZNL6 1462 aa19.5■□□□□ 0.71
VPS54-203ENST00000409558 TDRD9Q8NDG6 1382 aaKnown RBP19.5■□□□□ 0.71
VPS54-203ENST00000409558 ARHGAP35Q9NRY4 1499 aa19.47■□□□□ 0.71
VPS54-203ENST00000409558 CCNB3Q8WWL7 1395 aa19.47■□□□□ 0.71
VPS54-203ENST00000409558 DHX57Q6P158 1386 aaKnown RBP19.46■□□□□ 0.71
VPS54-203ENST00000409558 HMGXB3Q12766 1538 aa19.45■□□□□ 0.7
VPS54-203ENST00000409558 FHOD3Q2V2M9 1422 aa19.44■□□□□ 0.7
VPS54-203ENST00000409558 FANCD2Q9BXW9 1451 aa19.42■□□□□ 0.7
VPS54-203ENST00000409558 CHIC2Q9UKJ5 165 aa19.41■□□□□ 0.7
Retrieved 100 of 20,778 RNA–protein pairs in 15.5 ms