RNA–Protein interactions for RNA: ENST00000354504.7

VPS54-202, Transcript of VPS54, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS54, Length 3,594 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-202ENST00000354504 AEBP2Q6ZN18 517 aaPredicted RBP9.11□□□□□ -0.95
VPS54-202ENST00000354504 CHIC1Q5VXU3 224 aa8.86□□□□□ -0.99
VPS54-202ENST00000354504 SENP3Q9H4L4 574 aaPredicted RBP8.01□□□□□ -1.13
VPS54-202ENST00000354504 PHF23Q9BUL5 403 aaPredicted RBP7.71□□□□□ -1.18
VPS54-202ENST00000354504 FOXD1Q16676 465 aa7.27□□□□□ -1.25
VPS54-202ENST00000354504 MSH5O43196 834 aa7.08□□□□□ -1.28
VPS54-202ENST00000354504 PLPPR3Q6T4P5 718 aa7.06□□□□□ -1.28
VPS54-202ENST00000354504 POTEDQ86YR6 584 aa6.69□□□□□ -1.34
VPS54-202ENST00000354504 PIAS4Q8N2W9 510 aaPredicted RBP6.69□□□□□ -1.34
VPS54-202ENST00000354504 PPP6R1Q9UPN7 881 aa6.63□□□□□ -1.35
VPS54-202ENST00000354504 ADRA2BP18089 450 aa6.57□□□□□ -1.36
VPS54-202ENST00000354504 DNAJC5BQ9UF47 199 aa6.43□□□□□ -1.38
VPS54-202ENST00000354504 SCAF1Q9H7N4 1312 aaKnown RBP6.4□□□□□ -1.38
VPS54-202ENST00000354504 DMRT2Q9Y5R5 561 aa6.39□□□□□ -1.39
VPS54-202ENST00000354504 HOXD11P31277 338 aaPredicted RBP6.22□□□□□ -1.41
VPS54-202ENST00000354504 RNF216Q9NWF9 866 aaPredicted RBP6.13□□□□□ -1.43
VPS54-202ENST00000354504 CNKSR2Q8WXI2 1034 aa6.13□□□□□ -1.43
VPS54-202ENST00000354504 PPP4R3CPQ6ZMV5 832 aa6.07□□□□□ -1.44
VPS54-202ENST00000354504 NCBP3Q53F19 620 aaKnown RBP6.01□□□□□ -1.45
VPS54-202ENST00000354504 MAPK8IP2Q13387 824 aaPredicted RBP5.98□□□□□ -1.45
VPS54-202ENST00000354504 C1QBPQ07021 282 aaKnown RBP5.96□□□□□ -1.46
VPS54-202ENST00000354504 RNF39Q9H2S5 420 aa5.95□□□□□ -1.46
VPS54-202ENST00000354504 KCNA4P22459 653 aa5.78□□□□□ -1.48
VPS54-202ENST00000354504 CACNB1Q02641 598 aaPredicted RBP5.76□□□□□ -1.49
VPS54-202ENST00000354504 APLP2Q06481 763 aa5.75□□□□□ -1.49
VPS54-202ENST00000354504 NPM3O75607 178 aaKnown RBP5.72□□□□□ -1.49
VPS54-202ENST00000354504 NISCHQ9Y2I1 1504 aa5.67□□□□□ -1.5
VPS54-202ENST00000354504 EHMT2Q96KQ7 1210 aa5.64□□□□□ -1.51
VPS54-202ENST00000354504 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP5.64□□□□□ -1.51
VPS54-202ENST00000354504 HNRNPUL2Q1KMD3 747 aaKnown RBP5.64□□□□□ -1.51
VPS54-202ENST00000354504 GRWD1Q9BQ67 446 aaKnown RBP eCLIP5.57□□□□□ -1.526e-8■■□□□ 11.6
VPS54-202ENST00000354504 U3KPZ7 1027 aaPredicted RBP5.55□□□□□ -1.52
VPS54-202ENST00000354504 DCAF8L1A6NGE4 600 aa5.53□□□□□ -1.52
VPS54-202ENST00000354504 SAMD1Q6SPF0 538 aaPredicted RBP5.53□□□□□ -1.52
VPS54-202ENST00000354504 ZNF219Q9P2Y4 722 aaPredicted RBP5.49□□□□□ -1.53
VPS54-202ENST00000354504 DSG3P32926 999 aa5.48□□□□□ -1.53
VPS54-202ENST00000354504 SLC4A2P04920 1241 aa5.47□□□□□ -1.53
VPS54-202ENST00000354504 CSRNP3Q8WYN3 585 aa5.47□□□□□ -1.53
VPS54-202ENST00000354504 ATXN8OSP0DMR3 200 aa5.46□□□□□ -1.54
VPS54-202ENST00000354504 ZBTB22O15209 634 aa5.44□□□□□ -1.54
VPS54-202ENST00000354504 MYCNP04198 464 aaPredicted RBP5.44□□□□□ -1.54
VPS54-202ENST00000354504 ZBTB12Q9Y330 459 aaPredicted RBP5.4□□□□□ -1.55
VPS54-202ENST00000354504 SLC4A1APQ9BWU0 796 aaKnown RBP5.39□□□□□ -1.55
VPS54-202ENST00000354504 RBM42Q9BTD8 480 aaKnown RBP5.37□□□□□ -1.55
VPS54-202ENST00000354504 FOXD4L1Q9NU39 408 aa5.31□□□□□ -1.56
VPS54-202ENST00000354504 CAPN15O75808 1086 aa5.27□□□□□ -1.57
VPS54-202ENST00000354504 SPINK5Q9NQ38 1064 aaPredicted RBP5.27□□□□□ -1.57
VPS54-202ENST00000354504 AKT1S1Q96B36 256 aa5.26□□□□□ -1.57
VPS54-202ENST00000354504 POTEHQ6S545 545 aa5.21□□□□□ -1.57
VPS54-202ENST00000354504 CLCN6P51797 869 aa5.15□□□□□ -1.59
VPS54-202ENST00000354504 SPDYE2BA6NHP3 402 aa5.11□□□□□ -1.59
VPS54-202ENST00000354504 SPDYE6P0CI01 402 aa5.11□□□□□ -1.59
VPS54-202ENST00000354504 SPDYE2Q495Y8 402 aa5.11□□□□□ -1.59
VPS54-202ENST00000354504 TRHP20396 242 aaPredicted RBP5.1□□□□□ -1.59
VPS54-202ENST00000354504 FXR2P51116 673 aaKnown RBP eCLIP5.1□□□□□ -1.59
VPS54-202ENST00000354504 POLA2Q14181 598 aa5.09□□□□□ -1.6
VPS54-202ENST00000354504 SSUH2Q9Y2M2 353 aa5.06□□□□□ -1.6
VPS54-202ENST00000354504 CCDC180Q9P1Z9 1646 aa5.06□□□□□ -1.6
VPS54-202ENST00000354504 FBLN2P98095 1184 aa5.05□□□□□ -1.6
VPS54-202ENST00000354504 CHRDL2Q6WN34 429 aa5.05□□□□□ -1.6
VPS54-202ENST00000354504 REM2Q8IYK8 340 aaPredicted RBP5.03□□□□□ -1.6
VPS54-202ENST00000354504 ATF5Q9Y2D1 282 aaPredicted RBP5.02□□□□□ -1.61
VPS54-202ENST00000354504 ABCB7O75027 752 aa5.01□□□□□ -1.61
VPS54-202ENST00000354504 SPDYE1Q8NFV5 336 aaPredicted RBP4.97□□□□□ -1.61
VPS54-202ENST00000354504 PIP4P2Q8N4L2 257 aa4.95□□□□□ -1.62
VPS54-202ENST00000354504 SP7Q8TDD2 431 aaPredicted RBP4.95□□□□□ -1.62
VPS54-202ENST00000354504 C19orf67A6NJJ6 358 aa4.94□□□□□ -1.62
VPS54-202ENST00000354504 RTN4Q9NQC3 1192 aaKnown RBP4.92□□□□□ -1.62
VPS54-202ENST00000354504 PITPNM1O00562 1244 aa4.91□□□□□ -1.62
VPS54-202ENST00000354504 STAG3Q9UJ98 1225 aa4.91□□□□□ -1.62
VPS54-202ENST00000354504 MKRN4PQ13434 485 aaPredicted RBP4.9□□□□□ -1.62
VPS54-202ENST00000354504 PROM2Q8N271 834 aa4.9□□□□□ -1.62
VPS54-202ENST00000354504 OSCARQ8IYS5 282 aa4.87□□□□□ -1.63
VPS54-202ENST00000354504 FKBP8Q14318 412 aa4.86□□□□□ -1.63
VPS54-202ENST00000354504 ZCCHC6Q5VYS8 1495 aaKnown RBP4.84□□□□□ -1.63
VPS54-202ENST00000354504 ZNF692Q9BU19 519 aaPredicted RBP4.81□□□□□ -1.64
VPS54-202ENST00000354504 DCAF1Q9Y4B6 1507 aa4.78□□□□□ -1.64
VPS54-202ENST00000354504 ZNF579Q8NAF0 562 aaKnown RBP4.78□□□□□ -1.64
VPS54-202ENST00000354504 PRKAR2AP13861 404 aaKnown RBP4.74□□□□□ -1.65
VPS54-202ENST00000354504 UNC13AQ9UPW8 1703 aa4.73□□□□□ -1.65
VPS54-202ENST00000354504 PRR29P0C7W0 189 aa4.72□□□□□ -1.65
VPS54-202ENST00000354504 NPM1P06748 294 aaKnown RBP eCLIP4.71□□□□□ -1.65
VPS54-202ENST00000354504 SGIP1Q9BQI5 828 aa4.71□□□□□ -1.65
VPS54-202ENST00000354504 CREBZFQ9NS37 354 aa4.71□□□□□ -1.65
VPS54-202ENST00000354504 FARP1Q9Y4F1 1045 aaPredicted RBP4.71□□□□□ -1.66
VPS54-202ENST00000354504 PABPN1Q86U42 306 aaKnown RBP eCLIP4.7□□□□□ -1.66
VPS54-202ENST00000354504 MYO15BQ96JP2 1530 aa4.7□□□□□ -1.66
VPS54-202ENST00000354504 GABBR2O75899 941 aa4.68□□□□□ -1.66
VPS54-202ENST00000354504 HAX1O00165 279 aa4.67□□□□□ -1.66
VPS54-202ENST00000354504 PCDH10Q9P2E7 1040 aa4.67□□□□□ -1.66
VPS54-202ENST00000354504 MNX1P50219 401 aaPredicted RBP4.66□□□□□ -1.66
VPS54-202ENST00000354504 SPDYE4A6NLX3 237 aa4.65□□□□□ -1.66
VPS54-202ENST00000354504 SLC24A1O60721 1099 aa4.63□□□□□ -1.67
VPS54-202ENST00000354504 AMER1Q5JTC6 1135 aaPredicted RBP4.63□□□□□ -1.67
VPS54-202ENST00000354504 EVX2Q03828 476 aa4.61□□□□□ -1.67
VPS54-202ENST00000354504 ZBTB47Q9UFB7 747 aaPredicted RBP4.61□□□□□ -1.67
VPS54-202ENST00000354504 CD44P16070 742 aaKnown RBP4.6□□□□□ -1.67
VPS54-202ENST00000354504 ASTLQ6HA08 431 aaPredicted RBP4.6□□□□□ -1.67
VPS54-202ENST00000354504 PAK3O75914 559 aaPredicted RBP4.59□□□□□ -1.67
VPS54-202ENST00000354504 LHX8Q68G74 356 aa4.59□□□□□ -1.67
Retrieved 100 of 20,778 RNA–protein pairs in 15.3 ms