Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 NPDC1-201ENST00000371600 2187 ntAPPRIS ALT2 TSL 1 (best) BASIC23.68■■□□□ 1.38
HDDC3Q8N4P3 EIF4EBP1-201ENST00000338825 1020 ntAPPRIS P1 TSL 1 (best) BASIC23.68■■□□□ 1.38
HDDC3Q8N4P3 AC010501.1-201ENST00000606270 1962 ntBASIC23.67■■□□□ 1.38
HDDC3Q8N4P3 RRAD-201ENST00000299759 1569 ntAPPRIS P1 TSL 1 (best) BASIC23.67■■□□□ 1.38
HDDC3Q8N4P3 CTAG1B-202ENST00000359887 998 ntTSL 2 BASIC23.67■■□□□ 1.38
HDDC3Q8N4P3 MAST4-205ENST00000406039 717 ntTSL 1 (best) BASIC23.67■■□□□ 1.38
HDDC3Q8N4P3 NKX2-5-202ENST00000424406 1124 ntTSL 1 (best) BASIC23.67■■□□□ 1.38
HDDC3Q8N4P3 SRR-208ENST00000576848 588 ntTSL 4 BASIC23.67■■□□□ 1.38
HDDC3Q8N4P3 MROH6-211ENST00000534459 1789 ntAPPRIS ALT2 TSL 2 BASIC23.67■■□□□ 1.38
HDDC3Q8N4P3 ARL4D-201ENST00000320033 1612 ntAPPRIS P1 TSL 1 (best) BASIC23.66■■□□□ 1.38
HDDC3Q8N4P3 GNB2-203ENST00000393926 1641 ntAPPRIS P1 TSL 5 BASIC23.66■■□□□ 1.38
HDDC3Q8N4P3 C9orf40-201ENST00000376854 2327 ntAPPRIS P1 TSL 1 (best) BASIC23.66■■□□□ 1.38
HDDC3Q8N4P3 FHL2-203ENST00000358129 1578 ntTSL 5 BASIC23.66■■□□□ 1.38
HDDC3Q8N4P3 AQP1-202ENST00000409611 1140 ntTSL 1 (best) BASIC23.66■■□□□ 1.38
HDDC3Q8N4P3 RCCD1-203ENST00000555155 1871 ntAPPRIS ALT1 TSL 5 BASIC23.66■■□□□ 1.38
HDDC3Q8N4P3 ARPC5L-202ENST00000353214 2507 ntAPPRIS P1 TSL 2 BASIC23.66■■□□□ 1.38
HDDC3Q8N4P3 LINC01970-201ENST00000581489 1810 ntTSL 1 (best) BASIC23.66■■□□□ 1.38
HDDC3Q8N4P3 RAB40C-204ENST00000538492 2569 ntAPPRIS P1 TSL 2 BASIC23.65■■□□□ 1.38
HDDC3Q8N4P3 VRK2-202ENST00000412104 1916 ntTSL 1 (best) BASIC23.65■■□□□ 1.38
HDDC3Q8N4P3 RMI2-201ENST00000312499 1457 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
HDDC3Q8N4P3 CDKN2A-207ENST00000497750 565 ntTSL 4 BASIC23.65■■□□□ 1.38
HDDC3Q8N4P3 FEZ1-205ENST00000524435 750 ntTSL 2 BASIC23.65■■□□□ 1.38
HDDC3Q8N4P3 NAA30-203ENST00000555166 1294 ntAPPRIS ALT2 TSL 2 BASIC23.65■■□□□ 1.38
HDDC3Q8N4P3 CDKN2A-212ENST00000578845 678 ntTSL 2 BASIC23.65■■□□□ 1.38
HDDC3Q8N4P3 CHST13-201ENST00000319340 1789 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
HDDC3Q8N4P3 CYB5R3-201ENST00000352397 2124 ntAPPRIS P1 TSL 1 (best) BASIC23.65■■□□□ 1.38
HDDC3Q8N4P3 ZIC2-201ENST00000376335 2983 ntAPPRIS P1 TSL 1 (best) BASIC23.64■■□□□ 1.37
HDDC3Q8N4P3 RPP21-222ENST00000433076 577 ntTSL 2 BASIC23.64■■□□□ 1.37
HDDC3Q8N4P3 ERGIC1-206ENST00000519860 1000 ntTSL 3 BASIC23.64■■□□□ 1.37
HDDC3Q8N4P3 CALM1-203ENST00000544280 1064 ntTSL 1 (best) BASIC23.64■■□□□ 1.37
HDDC3Q8N4P3 TMEM125-202ENST00000439858 1786 ntAPPRIS P1 TSL 2 BASIC23.64■■□□□ 1.37
HDDC3Q8N4P3 ARTN-203ENST00000414809 1943 ntAPPRIS P4 TSL 3 BASIC23.64■■□□□ 1.37
HDDC3Q8N4P3 CEND1-201ENST00000330106 1649 ntAPPRIS P1 TSL 1 (best) BASIC23.63■■□□□ 1.37
HDDC3Q8N4P3 TMEM260-202ENST00000538838 1638 ntTSL 1 (best) BASIC23.63■■□□□ 1.37
HDDC3Q8N4P3 PCGF3-202ENST00000400151 1175 ntTSL 2 BASIC23.63■■□□□ 1.37
HDDC3Q8N4P3 AL136116.3-201ENST00000402907 1138 ntBASIC23.63■■□□□ 1.37
HDDC3Q8N4P3 DRAM2-211ENST00000539140 1883 ntAPPRIS P1 TSL 1 (best) BASIC23.63■■□□□ 1.37
HDDC3Q8N4P3 AL117209.1-201ENST00000560931 828 ntTSL 3 BASIC23.63■■□□□ 1.37
HDDC3Q8N4P3 AC092803.2-201ENST00000564287 1899 ntBASIC23.63■■□□□ 1.37
HDDC3Q8N4P3 AC018413.1-201ENST00000581996 1200 ntTSL 2 BASIC23.63■■□□□ 1.37
HDDC3Q8N4P3 FBXL6-202ENST00000455319 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC23.62■■□□□ 1.37
HDDC3Q8N4P3 C4orf36-201ENST00000295898 881 ntAPPRIS P1 TSL 1 (best) BASIC23.62■■□□□ 1.37
HDDC3Q8N4P3 AC131281.2-201ENST00000520478 145 ntBASIC23.62■■□□□ 1.37
HDDC3Q8N4P3 EPHA10-211ENST00000540011 720 ntTSL 5 BASIC23.62■■□□□ 1.37
HDDC3Q8N4P3 BICDL2-203ENST00000572449 1984 ntAPPRIS P1 TSL 5 BASIC23.61■■□□□ 1.37
HDDC3Q8N4P3 FOSL1-202ENST00000448083 1427 ntTSL 2 BASIC23.61■■□□□ 1.37
HDDC3Q8N4P3 LURAP1L-201ENST00000319264 1753 ntAPPRIS P1 TSL 1 (best) BASIC23.61■■□□□ 1.37
HDDC3Q8N4P3 SHISA5-201ENST00000296444 2369 ntTSL 1 (best) BASIC23.61■■□□□ 1.37
HDDC3Q8N4P3 LRRC1-201ENST00000370882 808 ntTSL 3 BASIC23.61■■□□□ 1.37
HDDC3Q8N4P3 TMEM134-202ENST00000393877 823 ntTSL 1 (best) BASIC23.61■■□□□ 1.37
HDDC3Q8N4P3 IL15RA-209ENST00000397255 759 ntAPPRIS ALT2 TSL 5 BASIC23.61■■□□□ 1.37
HDDC3Q8N4P3 IL15RA-216ENST00000530685 660 ntTSL 5 BASIC23.61■■□□□ 1.37
HDDC3Q8N4P3 PPP1CC-206ENST00000550991 1882 ntTSL 2 BASIC23.61■■□□□ 1.37
HDDC3Q8N4P3 EPCAM-201ENST00000263735 1724 ntAPPRIS P1 TSL 1 (best) BASIC23.61■■□□□ 1.37
HDDC3Q8N4P3 LINC00588-201ENST00000521663 1875 ntTSL 2 BASIC23.6■■□□□ 1.37
HDDC3Q8N4P3 HDHD5-203ENST00000399852 1118 ntTSL 3 BASIC23.6■■□□□ 1.37
HDDC3Q8N4P3 NKIRAS2-209ENST00000479407 992 ntTSL 3 BASIC23.6■■□□□ 1.37
HDDC3Q8N4P3 PPP1R14A-205ENST00000591585 949 ntTSL 2 BASIC23.6■■□□□ 1.37
HDDC3Q8N4P3 YRDC-201ENST00000373044 1826 ntAPPRIS P1 TSL 1 (best) BASIC23.6■■□□□ 1.37
HDDC3Q8N4P3 HDGF-201ENST00000357325 2380 ntAPPRIS P1 TSL 1 (best) BASIC23.6■■□□□ 1.37
HDDC3Q8N4P3 BTBD6-205ENST00000536364 1973 ntAPPRIS P2 TSL 5 BASIC23.6■■□□□ 1.37
HDDC3Q8N4P3 NR6A1-201ENST00000344523 1846 ntAPPRIS ALT2 TSL 5 BASIC23.59■■□□□ 1.37
HDDC3Q8N4P3 TK2-202ENST00000417693 1046 ntTSL 2 BASIC23.59■■□□□ 1.37
HDDC3Q8N4P3 SENP5-202ENST00000419026 973 ntTSL 3 BASIC23.59■■□□□ 1.37
HDDC3Q8N4P3 IGFBP7-203ENST00000514062 1251 ntAPPRIS ALT2 TSL 2 BASIC23.59■■□□□ 1.37
HDDC3Q8N4P3 ZNF784-202ENST00000591479 1559 ntTSL 1 (best) BASIC23.59■■□□□ 1.37
HDDC3Q8N4P3 TMIE-201ENST00000326431 1824 ntAPPRIS P1 TSL 1 (best) BASIC23.59■■□□□ 1.37
HDDC3Q8N4P3 PFN2-210ENST00000481767 1620 ntTSL 2 BASIC23.59■■□□□ 1.37
HDDC3Q8N4P3 TSPAN4-202ENST00000397396 1332 ntTSL 5 BASIC23.59■■□□□ 1.37
HDDC3Q8N4P3 BAMBI-201ENST00000375533 1877 ntAPPRIS P1 TSL 1 (best) BASIC23.58■■□□□ 1.37
HDDC3Q8N4P3 SAC3D1-201ENST00000398846 1566 ntAPPRIS P1 TSL 1 (best) BASIC23.58■■□□□ 1.37
HDDC3Q8N4P3 LRRC61-205ENST00000493307 1456 ntAPPRIS P1 TSL 5 BASIC23.58■■□□□ 1.37
HDDC3Q8N4P3 GDF6-202ENST00000620978 973 ntTSL 1 (best) BASIC23.58■■□□□ 1.37
HDDC3Q8N4P3 Z98883.1-202ENST00000635107 1289 ntTSL 5 BASIC23.58■■□□□ 1.37
HDDC3Q8N4P3 AC005551.1-201ENST00000641816 493 ntAPPRIS P1 BASIC23.58■■□□□ 1.37
HDDC3Q8N4P3 KAZALD1-201ENST00000370200 1913 ntAPPRIS P1 TSL 1 (best) BASIC23.58■■□□□ 1.37
HDDC3Q8N4P3 LYPLA1-215ENST00000618914 2482 ntTSL 5 BASIC23.58■■□□□ 1.37
HDDC3Q8N4P3 AC090877.2-201ENST00000558441 1738 ntBASIC23.58■■□□□ 1.37
HDDC3Q8N4P3 KLC3-201ENST00000391946 1780 ntAPPRIS P2 TSL 1 (best) BASIC23.57■■□□□ 1.36
HDDC3Q8N4P3 KAT8-202ENST00000448516 1789 ntTSL 1 (best) BASIC23.57■■□□□ 1.36
HDDC3Q8N4P3 TCFL5-201ENST00000217162 2453 ntAPPRIS ALT2 TSL 1 (best) BASIC23.57■■□□□ 1.36
HDDC3Q8N4P3 TCFL5-202ENST00000335351 2456 ntAPPRIS P2 TSL 1 (best) BASIC23.57■■□□□ 1.36
HDDC3Q8N4P3 AF131216.4-201ENST00000638924 1588 ntBASIC23.57■■□□□ 1.36
HDDC3Q8N4P3 RBM42-206ENST00000592202 1469 ntTSL 5 BASIC23.57■■□□□ 1.36
HDDC3Q8N4P3 FSD1-201ENST00000221856 1831 ntAPPRIS P1 TSL 1 (best) BASIC23.57■■□□□ 1.36
HDDC3Q8N4P3 CLDN15-201ENST00000308344 1370 ntAPPRIS P1 TSL 1 (best) BASIC23.57■■□□□ 1.36
HDDC3Q8N4P3 PYCARD-202ENST00000350605 696 ntTSL 1 (best) BASIC23.57■■□□□ 1.36
HDDC3Q8N4P3 KRTAP5-1-201ENST00000382171 942 ntAPPRIS P1 BASIC23.57■■□□□ 1.36
HDDC3Q8N4P3 AC092807.3-205ENST00000467666 531 ntTSL 3 BASIC23.57■■□□□ 1.36
HDDC3Q8N4P3 AC010997.5-201ENST00000609182 354 ntBASIC23.57■■□□□ 1.36
HDDC3Q8N4P3 TRIM14-203ENST00000375098 1792 ntAPPRIS P1 TSL 2 BASIC23.57■■□□□ 1.36
HDDC3Q8N4P3 RFLNA-205ENST00000546355 2354 ntAPPRIS ALT1 TSL 1 (best) BASIC23.57■■□□□ 1.36
HDDC3Q8N4P3 BTBD6-203ENST00000392554 2176 ntAPPRIS P2 TSL 1 (best) BASIC23.57■■□□□ 1.36
HDDC3Q8N4P3 DHRS11-215ENST00000618403 1598 ntAPPRIS P1 TSL 1 (best) BASIC23.57■■□□□ 1.36
HDDC3Q8N4P3 TAZ-216ENST00000613002 1485 ntTSL 1 (best) BASIC23.56■■□□□ 1.36
HDDC3Q8N4P3 ROM1-201ENST00000278833 1878 ntAPPRIS P2 TSL 1 (best) BASIC23.56■■□□□ 1.36
HDDC3Q8N4P3 ZDHHC16-206ENST00000370854 1798 ntAPPRIS P4 TSL 1 (best) BASIC23.56■■□□□ 1.36
HDDC3Q8N4P3 PHF23-205ENST00000571362 1768 ntTSL 2 BASIC23.56■■□□□ 1.36
HDDC3Q8N4P3 WBP1-203ENST00000409737 1110 ntAPPRIS ALT1 TSL 5 BASIC23.56■■□□□ 1.36
HDDC3Q8N4P3 HNRNPUL1-222ENST00000617774 451 ntTSL 5 BASIC23.56■■□□□ 1.36
Retrieved 100 of 98,524 protein–RNA pairs in 37.2 ms