Protein–RNA interactions for Protein: A6NJ46

NKX6-3, Homeobox protein Nkx-6.3, humanhuman

Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX6-3A6NJ46 EME2-205ENST00000568449 1234 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
NKX6-3A6NJ46 PRRX2-201ENST00000372469 1311 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
NKX6-3A6NJ46 CTF1-201ENST00000279804 1664 ntAPPRIS P3 TSL 1 (best) BASIC19.68■□□□□ 0.74
NKX6-3A6NJ46 ZNF365-206ENST00000395255 1674 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
NKX6-3A6NJ46 GNAL-201ENST00000269162 1722 ntAPPRIS P1 TSL 2 BASIC19.68■□□□□ 0.74
NKX6-3A6NJ46 KAT8-202ENST00000448516 1789 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
NKX6-3A6NJ46 ACSS1-203ENST00000432802 2438 ntTSL 2 BASIC19.67■□□□□ 0.74
NKX6-3A6NJ46 NRXN1-205ENST00000401710 2873 ntTSL 5 BASIC19.67■□□□□ 0.74
NKX6-3A6NJ46 RRAD-201ENST00000299759 1569 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
NKX6-3A6NJ46 ELOC-206ENST00000520242 1573 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
NKX6-3A6NJ46 C9orf147-202ENST00000457681 561 ntTSL 2 BASIC19.67■□□□□ 0.74
NKX6-3A6NJ46 GPRC5B-202ENST00000535671 1215 ntAPPRIS ALT2 TSL 1 (best) BASIC19.67■□□□□ 0.74
NKX6-3A6NJ46 RAB11FIP3-201ENST00000262305 4831 ntAPPRIS P2 TSL 1 (best) BASIC19.67■□□□□ 0.74
NKX6-3A6NJ46 PLEKHO1-202ENST00000369126 1809 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
NKX6-3A6NJ46 GTPBP3-203ENST00000361619 1894 ntTSL 2 BASIC19.67■□□□□ 0.74
NKX6-3A6NJ46 NFU1-203ENST00000410022 1467 ntAPPRIS P3 TSL 1 (best) BASIC19.67■□□□□ 0.74
NKX6-3A6NJ46 HNRNPD-203ENST00000353341 1585 ntAPPRIS ALT1 TSL 1 (best) BASIC19.66■□□□□ 0.74
NKX6-3A6NJ46 HOXA4-204ENST00000610970 1728 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
NKX6-3A6NJ46 SIX2-201ENST00000303077 2205 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
NKX6-3A6NJ46 LURAP1L-201ENST00000319264 1753 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
NKX6-3A6NJ46 MFSD5-201ENST00000329548 1760 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
NKX6-3A6NJ46 HABP4-202ENST00000375251 2304 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
NKX6-3A6NJ46 ZFAND2B-201ENST00000289528 1314 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
NKX6-3A6NJ46 HOMER3-201ENST00000221222 1384 ntAPPRIS ALT1 TSL 5 BASIC19.66■□□□□ 0.74
NKX6-3A6NJ46 WIPI2-202ENST00000382384 1948 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
NKX6-3A6NJ46 SLC15A3-201ENST00000227880 2115 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
NKX6-3A6NJ46 PPP1R14C-201ENST00000361131 2152 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
NKX6-3A6NJ46 SNTA1-201ENST00000217381 2342 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
NKX6-3A6NJ46 REXO4-202ENST00000371942 2360 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
NKX6-3A6NJ46 FOXA3-201ENST00000302177 1989 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
NKX6-3A6NJ46 CD63-201ENST00000257857 1070 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
NKX6-3A6NJ46 PAOX-206ENST00000480071 1324 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
NKX6-3A6NJ46 BCKDHB-202ENST00000356489 1514 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
NKX6-3A6NJ46 SLC6A10P-202ENST00000431994 2058 ntBASIC19.64■□□□□ 0.74
NKX6-3A6NJ46 PDIA6-201ENST00000272227 2338 ntAPPRIS P3 TSL 1 (best) BASIC19.64■□□□□ 0.74
NKX6-3A6NJ46 IDNK-201ENST00000376417 511 ntTSL 5 BASIC19.64■□□□□ 0.73
NKX6-3A6NJ46 IDNK-202ENST00000376419 692 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
NKX6-3A6NJ46 CARNMT1-201ENST00000376830 1012 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
NKX6-3A6NJ46 PROSER2-202ENST00000379200 1232 ntAPPRIS ALT2 BASIC19.64■□□□□ 0.73
NKX6-3A6NJ46 YBX1P4-201ENST00000392794 808 ntBASIC19.64■□□□□ 0.73
NKX6-3A6NJ46 CT47A7-201ENST00000434883 1288 ntAPPRIS P1 TSL 2 BASIC19.64■□□□□ 0.73
NKX6-3A6NJ46 PKNOX2-AS1-201ENST00000532316 586 ntTSL 3 BASIC19.64■□□□□ 0.73
NKX6-3A6NJ46 MAGI2-202ENST00000419488 6800 ntAPPRIS ALT2 TSL 1 (best) BASIC19.64■□□□□ 0.73
NKX6-3A6NJ46 C7orf25-206ENST00000447342 1823 ntTSL 2 BASIC19.64■□□□□ 0.73
NKX6-3A6NJ46 C8orf58-201ENST00000289989 2016 ntAPPRIS P3 TSL 5 BASIC19.64■□□□□ 0.73
NKX6-3A6NJ46 AC020928.2-201ENST00000588717 2197 ntBASIC19.64■□□□□ 0.73
NKX6-3A6NJ46 NR2F1-AS1-214ENST00000607831 1963 ntTSL 2 BASIC19.63■□□□□ 0.73
NKX6-3A6NJ46 TANGO2-204ENST00000401833 1920 ntTSL 5 BASIC19.63■□□□□ 0.73
NKX6-3A6NJ46 FNTA-201ENST00000302279 1840 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
NKX6-3A6NJ46 IQANK1-201ENST00000527139 1803 ntAPPRIS P1 TSL 5 BASIC19.63■□□□□ 0.73
NKX6-3A6NJ46 SLC25A1-202ENST00000451283 1514 ntTSL 2 BASIC19.63■□□□□ 0.73
NKX6-3A6NJ46 PGR-AS1-202ENST00000632820 1545 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
NKX6-3A6NJ46 VSTM2A-202ENST00000402613 1076 ntTSL 2 BASIC19.63■□□□□ 0.73
NKX6-3A6NJ46 CDKN2A-214ENST00000579755 1283 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
NKX6-3A6NJ46 FP236240.1-201ENST00000619537 1116 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
NKX6-3A6NJ46 GDF1-201ENST00000247005 2517 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
NKX6-3A6NJ46 CERS1-204ENST00000623882 2517 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
NKX6-3A6NJ46 CADM4-201ENST00000222374 2178 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
NKX6-3A6NJ46 AKT1S1-203ENST00000391831 2025 ntAPPRIS P1 TSL 2 BASIC19.63■□□□□ 0.73
NKX6-3A6NJ46 ARL4D-201ENST00000320033 1612 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
NKX6-3A6NJ46 KRT8P33-201ENST00000508125 1423 ntBASIC19.62■□□□□ 0.73
NKX6-3A6NJ46 HSF1-204ENST00000528838 2142 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
NKX6-3A6NJ46 HAGHL-205ENST00000561546 1041 ntTSL 2 BASIC19.62■□□□□ 0.73
NKX6-3A6NJ46 SSSCA1-AS1-201ENST00000567594 614 ntBASIC19.62■□□□□ 0.73
NKX6-3A6NJ46 NDEL1-219ENST00000585098 454 ntTSL 3 BASIC19.62■□□□□ 0.73
NKX6-3A6NJ46 GABBR2-201ENST00000259455 5788 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
NKX6-3A6NJ46 SPG21-201ENST00000204566 1822 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
NKX6-3A6NJ46 ZNF74-204ENST00000405993 1839 ntAPPRIS ALT2 TSL 5 BASIC19.62■□□□□ 0.73
NKX6-3A6NJ46 ZNF784-202ENST00000591479 1559 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
NKX6-3A6NJ46 KCNT1-201ENST00000263604 5245 ntAPPRIS ALT2 TSL 5 BASIC19.61■□□□□ 0.73
NKX6-3A6NJ46 MAZ-201ENST00000219782 2698 ntAPPRIS P4 TSL 1 (best) BASIC19.61■□□□□ 0.73
NKX6-3A6NJ46 GPR160-201ENST00000355897 2039 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
NKX6-3A6NJ46 PTOV1-201ENST00000391842 1875 ntAPPRIS P1 TSL 5 BASIC19.61■□□□□ 0.73
NKX6-3A6NJ46 YWHAH-201ENST00000248975 1825 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
NKX6-3A6NJ46 DYRK2-203ENST00000393555 2209 ntAPPRIS ALT1 TSL 1 (best) BASIC19.61■□□□□ 0.73
NKX6-3A6NJ46 AC142381.3-201ENST00000568208 1670 ntBASIC19.61■□□□□ 0.73
NKX6-3A6NJ46 FHL2-203ENST00000358129 1578 ntTSL 5 BASIC19.61■□□□□ 0.73
NKX6-3A6NJ46 DCUN1D2-208ENST00000478244 2045 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
NKX6-3A6NJ46 RBMXL2-201ENST00000306904 1874 ntAPPRIS P1 BASIC19.6■□□□□ 0.73
NKX6-3A6NJ46 SNX5-201ENST00000377759 2270 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
NKX6-3A6NJ46 TMEM268-202ENST00000374049 4578 ntAPPRIS ALT1 TSL 5 BASIC19.6■□□□□ 0.73
NKX6-3A6NJ46 KLF3-AS1-202ENST00000440181 2368 ntTSL 2 BASIC19.6■□□□□ 0.73
NKX6-3A6NJ46 FAM162B-201ENST00000368557 1036 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
NKX6-3A6NJ46 C5orf38-202ENST00000397835 681 ntAPPRIS ALT2 TSL 5 BASIC19.6■□□□□ 0.73
NKX6-3A6NJ46 ZNF606-203ENST00000547121 1196 ntTSL 2 BASIC19.6■□□□□ 0.73
NKX6-3A6NJ46 PVT1_1.1-201ENST00000615125 194 ntBASIC19.6■□□□□ 0.73
NKX6-3A6NJ46 TMEM260-202ENST00000538838 1638 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
NKX6-3A6NJ46 C8orf58-206ENST00000614574 1955 ntAPPRIS ALT2 TSL 5 BASIC19.6■□□□□ 0.73
NKX6-3A6NJ46 PTH1R-206ENST00000430002 1947 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
NKX6-3A6NJ46 SPIRE2-205ENST00000563972 1823 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
NKX6-3A6NJ46 LGR4-201ENST00000379214 5206 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
NKX6-3A6NJ46 BIN1-206ENST00000352848 2209 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
NKX6-3A6NJ46 PDSS1-201ENST00000376215 1626 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
NKX6-3A6NJ46 LINC01342-201ENST00000416774 1620 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
NKX6-3A6NJ46 AC022211.4-201ENST00000625094 2161 ntBASIC19.59■□□□□ 0.73
NKX6-3A6NJ46 LHX3-201ENST00000371746 2403 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
NKX6-3A6NJ46 CFAP77-202ENST00000393215 901 ntAPPRIS ALT2 TSL 5 BASIC19.59■□□□□ 0.73
NKX6-3A6NJ46 NDUFA10-204ENST00000407129 699 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
NKX6-3A6NJ46 TMEM238-201ENST00000444469 1000 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
NKX6-3A6NJ46 MIR4508-201ENST00000584178 70 ntBASIC19.59■□□□□ 0.73
Retrieved 100 of 98,524 protein–RNA pairs in 20.1 ms