Protein–RNA interactions for Protein: Q99715

COL12A1, Collagen alpha-1(XII) chain, humanhuman

Predictions only

Length 3,063 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL12A1Q99715 LINC01578-204ENST00000554894 556 ntTSL 3 BASIC26.59■■□□□ 1.85
COL12A1Q99715 LINC01578-207ENST00000556895 802 ntTSL 2 BASIC26.59■■□□□ 1.85
COL12A1Q99715 NT5DC2-203ENST00000459839 1639 ntTSL 1 (best) BASIC26.5■■□□□ 1.83
COL12A1Q99715 AC097358.2-201ENST00000607541 1159 ntBASIC26.44■■□□□ 1.82
COL12A1Q99715 HOPX-206ENST00000503639 1248 ntAPPRIS P1 TSL 1 (best) BASIC26.42■■□□□ 1.82
COL12A1Q99715 AL031258.1-201ENST00000623562 325 ntBASIC26.42■■□□□ 1.82
COL12A1Q99715 CGGBP1-206ENST00000482016 1147 ntAPPRIS P1 TSL 2 BASIC26.42■■□□□ 1.82
COL12A1Q99715 RAN-202ENST00000392369 1530 ntAPPRIS P1 TSL 1 (best) BASIC26.41■■□□□ 1.82
COL12A1Q99715 HOXB3-208ENST00000476342 1420 ntAPPRIS P1 TSL 1 (best) BASIC26.4■■□□□ 1.82
COL12A1Q99715 TXN-202ENST00000374517 869 ntAPPRIS P1 TSL 1 (best) BASIC26.39■■□□□ 1.82
COL12A1Q99715 S100A10-202ENST00000368811 1202 ntAPPRIS P1 TSL 1 (best) BASIC26.37■■□□□ 1.81
COL12A1Q99715 AGTRAP-204ENST00000376637 1067 ntTSL 2 BASIC26.36■■□□□ 1.81
COL12A1Q99715 LRRC75B-201ENST00000318753 1238 ntAPPRIS P1 TSL 1 (best) BASIC26.35■■□□□ 1.81
COL12A1Q99715 PLPP2-203ENST00000434325 1383 ntAPPRIS P1 TSL 1 (best) BASIC26.34■■□□□ 1.81
COL12A1Q99715 AL136373.1-201ENST00000634804 1449 ntAPPRIS P1 BASIC26.33■■□□□ 1.81
COL12A1Q99715 LIMCH1-211ENST00000509638 1570 ntTSL 1 (best) BASIC26.32■■□□□ 1.8
COL12A1Q99715 LMO1-202ENST00000428101 1038 ntAPPRIS ALT1 TSL 1 (best) BASIC26.31■■□□□ 1.8
COL12A1Q99715 ZFAND2B-204ENST00000409217 886 ntTSL 2 BASIC26.31■■□□□ 1.8
COL12A1Q99715 CHCHD4-202ENST00000396914 1405 ntAPPRIS P1 TSL 1 (best) BASIC26.3■■□□□ 1.8
COL12A1Q99715 AC092755.2-201ENST00000560199 402 ntTSL 3 BASIC26.28■■□□□ 1.8
COL12A1Q99715 NKAIN4-203ENST00000370316 1430 ntAPPRIS P1 TSL 1 (best) BASIC26.27■■□□□ 1.8
COL12A1Q99715 NT5M-207ENST00000616989 1635 ntTSL 1 (best) BASIC26.22■■□□□ 1.79
COL12A1Q99715 NADK2-210ENST00000514504 1233 ntTSL 5 BASIC26.22■■□□□ 1.79
COL12A1Q99715 SH3GL1-202ENST00000417295 1404 ntTSL 2 BASIC26.22■■□□□ 1.79
COL12A1Q99715 PPP1R35-201ENST00000292330 1031 ntAPPRIS P1 TSL 1 (best) BASIC26.21■■□□□ 1.79
COL12A1Q99715 BHLHE23-201ENST00000370346 1057 ntAPPRIS P1 BASIC26.18■■□□□ 1.78
COL12A1Q99715 AL162393.1-201ENST00000437852 946 ntBASIC26.18■■□□□ 1.78
COL12A1Q99715 ECI1-201ENST00000301729 1541 ntAPPRIS P2 TSL 1 (best) BASIC26.18■■□□□ 1.78
COL12A1Q99715 AC009133.5-201ENST00000562594 473 ntTSL 4 BASIC26.15■■□□□ 1.78
COL12A1Q99715 C11orf68-201ENST00000438576 1619 ntAPPRIS ALT2 TSL 2 BASIC26.13■■□□□ 1.77
COL12A1Q99715 NXNL1-201ENST00000301944 946 ntAPPRIS P1 TSL 1 (best) BASIC26.13■■□□□ 1.77
COL12A1Q99715 NRG1-221ENST00000614767 762 ntTSL 5 BASIC26.13■■□□□ 1.77
COL12A1Q99715 ZFAND2B-206ENST00000409336 944 ntAPPRIS P1 TSL 5 BASIC26.12■■□□□ 1.77
COL12A1Q99715 ZFAND2B-221ENST00000621130 1070 ntTSL 5 BASIC26.12■■□□□ 1.77
COL12A1Q99715 SETD8P1-201ENST00000623146 1180 ntBASIC26.12■■□□□ 1.77
COL12A1Q99715 AC025431.1-201ENST00000559684 874 ntTSL 3 BASIC26.06■■□□□ 1.76
COL12A1Q99715 SEPT3-204ENST00000406029 1866 ntTSL 5 BASIC26.04■■□□□ 1.76
COL12A1Q99715 AC068152.1-210ENST00000574741 836 ntTSL 3 BASIC26.03■■□□□ 1.76
COL12A1Q99715 HLA-V-202ENST00000446817 847 ntBASIC26■■□□□ 1.75
COL12A1Q99715 AC068152.1-207ENST00000573341 647 ntTSL 2 BASIC26■■□□□ 1.75
COL12A1Q99715 RNF126-201ENST00000292363 1694 ntAPPRIS P1 TSL 1 (best) BASIC25.99■■□□□ 1.75
COL12A1Q99715 AC004080.1-201ENST00000523608 757 ntTSL 2 BASIC25.99■■□□□ 1.75
COL12A1Q99715 MTNR1A-201ENST00000307161 1289 ntAPPRIS P1 TSL 1 (best) BASIC25.98■■□□□ 1.75
COL12A1Q99715 MPST-206ENST00000429360 1331 ntTSL 1 (best) BASIC25.97■■□□□ 1.75
COL12A1Q99715 NECTIN3-201ENST00000319792 1549 ntAPPRIS ALT2 TSL 1 (best) BASIC25.95■■□□□ 1.75
COL12A1Q99715 MIR7108-201ENST00000614319 87 ntBASIC25.95■■□□□ 1.74
COL12A1Q99715 PVT1-219ENST00000523427 938 ntTSL 3 BASIC25.94■■□□□ 1.74
COL12A1Q99715 SSBP4-206ENST00000599699 793 ntTSL 2 BASIC25.91■■□□□ 1.74
COL12A1Q99715 ANKRD65-203ENST00000454272 1506 ntAPPRIS P1 TSL 5 BASIC25.9■■□□□ 1.74
COL12A1Q99715 CAPNS1-206ENST00000588815 1471 ntAPPRIS P2 TSL 1 (best) BASIC25.9■■□□□ 1.74
COL12A1Q99715 HAGHL-204ENST00000549114 1820 ntTSL 5 BASIC25.89■■□□□ 1.74
COL12A1Q99715 FAM89B-201ENST00000316409 1409 ntTSL 1 (best) BASIC25.89■■□□□ 1.73
COL12A1Q99715 ABHD17AP4-201ENST00000411545 909 ntBASIC25.87■■□□□ 1.73
COL12A1Q99715 KLF16-203ENST00000592313 508 ntTSL 3 BASIC25.85■■□□□ 1.73
COL12A1Q99715 COPS6-201ENST00000303904 1432 ntAPPRIS P2 TSL 1 (best) BASIC25.84■■□□□ 1.73
COL12A1Q99715 HSPB11-201ENST00000194214 915 ntAPPRIS P1 TSL 1 (best) BASIC25.84■■□□□ 1.73
COL12A1Q99715 PWWP2B-202ENST00000631148 2013 ntTSL 5 BASIC25.84■■□□□ 1.73
COL12A1Q99715 FTCDNL1-201ENST00000416668 944 ntTSL 1 (best) BASIC25.82■■□□□ 1.72
COL12A1Q99715 EBPL-203ENST00000378270 579 ntTSL 2 BASIC25.82■■□□□ 1.72
COL12A1Q99715 FAM149A-215ENST00000514153 2070 ntAPPRIS P2 TSL 5 BASIC25.81■■□□□ 1.72
COL12A1Q99715 MSX2-202ENST00000507785 1188 ntTSL 2 BASIC25.8■■□□□ 1.72
COL12A1Q99715 LYNX1-208ENST00000615007 1293 ntAPPRIS P1 TSL 1 (best) BASIC25.79■■□□□ 1.72
COL12A1Q99715 ZFP90-204ENST00000564323 560 ntTSL 4 BASIC25.78■■□□□ 1.72
COL12A1Q99715 ZFP90-219ENST00000611381 695 ntTSL 1 (best) BASIC25.78■■□□□ 1.72
COL12A1Q99715 AC079305.1-201ENST00000428541 499 ntTSL 3 BASIC25.77■■□□□ 1.72
COL12A1Q99715 MBP-237ENST00000579129 1052 ntTSL 5 BASIC25.76■■□□□ 1.71
COL12A1Q99715 ECHS1-201ENST00000368547 1617 ntAPPRIS P1 TSL 1 (best) BASIC25.75■■□□□ 1.71
COL12A1Q99715 NPHP3-202ENST00000383282 782 ntTSL 1 (best) BASIC25.72■■□□□ 1.71
COL12A1Q99715 NT5M-201ENST00000389022 1617 ntAPPRIS P1 TSL 1 (best) BASIC25.71■■□□□ 1.71
COL12A1Q99715 FAM19A5-203ENST00000402357 1508 ntTSL 1 (best) BASIC25.69■■□□□ 1.7
COL12A1Q99715 IL13RA1-201ENST00000371642 1096 ntTSL 1 (best) BASIC25.69■■□□□ 1.7
COL12A1Q99715 AP006261.1-201ENST00000584783 668 ntBASIC25.67■■□□□ 1.7
COL12A1Q99715 CAHM-201ENST00000604200 896 ntBASIC25.65■■□□□ 1.7
COL12A1Q99715 ATPAF1-201ENST00000329231 1241 ntTSL 2 BASIC25.64■■□□□ 1.69
COL12A1Q99715 ECI1-203ENST00000562238 948 ntTSL 1 (best) BASIC25.63■■□□□ 1.69
COL12A1Q99715 COX4I1-203ENST00000562336 873 ntAPPRIS P1 TSL 5 BASIC25.63■■□□□ 1.69
COL12A1Q99715 FAM89A-201ENST00000366654 1495 ntAPPRIS P1 TSL 1 (best) BASIC25.63■■□□□ 1.69
COL12A1Q99715 NT5DC2-202ENST00000422318 1795 ntAPPRIS ALT2 TSL 5 BASIC25.61■■□□□ 1.69
COL12A1Q99715 GSC2-201ENST00000086933 1033 ntAPPRIS P1 TSL 5 BASIC25.61■■□□□ 1.69
COL12A1Q99715 HNRNPLP2-201ENST00000568980 1570 ntBASIC25.6■■□□□ 1.69
COL12A1Q99715 DRD4-201ENST00000176183 1375 ntAPPRIS P1 TSL 1 (best) BASIC25.58■■□□□ 1.69
COL12A1Q99715 AUTS2-202ENST00000403018 957 ntTSL 1 (best) BASIC25.58■■□□□ 1.69
COL12A1Q99715 AC006486.1-201ENST00000594664 634 ntAPPRIS P1 TSL 3 BASIC25.57■■□□□ 1.68
COL12A1Q99715 FGF3-201ENST00000334134 892 ntAPPRIS P1 TSL 1 (best) BASIC25.57■■□□□ 1.68
COL12A1Q99715 AC104109.3-201ENST00000519718 483 ntAPPRIS P1 TSL 5 BASIC25.56■■□□□ 1.68
COL12A1Q99715 AC009097.4-201ENST00000566738 777 ntTSL 2 BASIC25.56■■□□□ 1.68
COL12A1Q99715 GNPTAB-202ENST00000392919 760 ntTSL 1 (best) BASIC25.55■■□□□ 1.68
COL12A1Q99715 MLEC-202ENST00000412616 841 ntTSL 3 BASIC25.54■■□□□ 1.68
COL12A1Q99715 PSMG4-205ENST00000419065 629 ntTSL 2 BASIC25.52■■□□□ 1.68
COL12A1Q99715 UBALD1-202ENST00000587615 799 ntTSL 2 BASIC25.52■■□□□ 1.68
COL12A1Q99715 FBXO2-201ENST00000354287 1560 ntAPPRIS P1 TSL 1 (best) BASIC25.52■■□□□ 1.68
COL12A1Q99715 AC243773.2-204ENST00000621428 1462 ntTSL 1 (best) BASIC25.51■■□□□ 1.67
COL12A1Q99715 NREP-216ENST00000508870 540 ntAPPRIS P1 TSL 4 BASIC25.51■■□□□ 1.67
COL12A1Q99715 AL391121.1-201ENST00000607967 1349 ntBASIC25.5■■□□□ 1.67
COL12A1Q99715 MSANTD2-203ENST00000524950 1109 ntTSL 2 BASIC25.5■■□□□ 1.67
COL12A1Q99715 AL109917.1-201ENST00000412228 906 ntTSL 2 BASIC25.48■■□□□ 1.67
COL12A1Q99715 ACOT12-204ENST00000513751 612 ntTSL 1 (best) BASIC25.47■■□□□ 1.67
COL12A1Q99715 DUSP15-202ENST00000339738 1454 ntAPPRIS P1 TSL 1 (best) BASIC25.45■■□□□ 1.67
COL12A1Q99715 RPS2-201ENST00000343262 985 ntAPPRIS P1 TSL 1 (best) BASIC25.44■■□□□ 1.66
COL12A1Q99715 RPS2-202ENST00000526522 924 ntTSL 2 BASIC25.42■■□□□ 1.66
Retrieved 100 of 98,524 protein–RNA pairs in 11.2 ms