Protein–RNA interactions for Protein: Q9Y566

SHANK1, SH3 and multiple ankyrin repeat domains protein 1, humanhuman

Predictions only

Length 2,161 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK1Q9Y566 PABPN1-207ENST00000556821 1220 ntTSL 2 BASIC21.51■■□□□ 1.03
SHANK1Q9Y566 UBALD2-201ENST00000327490 1593 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
SHANK1Q9Y566 MXD3-201ENST00000423571 1534 ntTSL 2 BASIC21.51■■□□□ 1.03
SHANK1Q9Y566 CIRBP-216ENST00000588090 1459 ntAPPRIS P3 TSL 3 BASIC21.51■■□□□ 1.03
SHANK1Q9Y566 FTCD-201ENST00000291670 1905 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
SHANK1Q9Y566 MEN1-204ENST00000377313 1871 ntAPPRIS P3 TSL 2 BASIC21.51■■□□□ 1.03
SHANK1Q9Y566 RAB40C-204ENST00000538492 2569 ntAPPRIS P1 TSL 2 BASIC21.51■■□□□ 1.03
SHANK1Q9Y566 GUK1-205ENST00000366722 850 ntTSL 3 BASIC21.5■■□□□ 1.03
SHANK1Q9Y566 RASSF1-AS1-201ENST00000629828 790 ntBASIC21.5■■□□□ 1.03
SHANK1Q9Y566 LRFN4-202ENST00000393952 1550 ntTSL 5 BASIC21.5■■□□□ 1.03
SHANK1Q9Y566 PLEK2-201ENST00000216446 1549 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
SHANK1Q9Y566 ZNF276-202ENST00000443381 2267 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
SHANK1Q9Y566 PRICKLE4-201ENST00000394259 939 ntAPPRIS ALT2 TSL 5 BASIC21.49■■□□□ 1.03
SHANK1Q9Y566 MCRIP1-202ENST00000457257 942 ntTSL 3 BASIC21.49■■□□□ 1.03
SHANK1Q9Y566 BMP8A-201ENST00000331593 1692 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
SHANK1Q9Y566 VSTM2L-202ENST00000373461 1959 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
SHANK1Q9Y566 SLC39A3-201ENST00000269740 1502 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
SHANK1Q9Y566 EBPL-204ENST00000378272 766 ntTSL 3 BASIC21.48■■□□□ 1.03
SHANK1Q9Y566 SLC25A39-203ENST00000537904 1274 ntTSL 2 BASIC21.48■■□□□ 1.03
SHANK1Q9Y566 ZNF584-205ENST00000596281 575 ntTSL 2 BASIC21.48■■□□□ 1.03
SHANK1Q9Y566 GSX2-205ENST00000611459 1262 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
SHANK1Q9Y566 PNCK-204ENST00000370150 1612 ntAPPRIS P1 TSL 5 BASIC21.48■■□□□ 1.03
SHANK1Q9Y566 NRARP-201ENST00000356628 1770 ntAPPRIS P1 BASIC21.48■■□□□ 1.03
SHANK1Q9Y566 CAMKK1-201ENST00000158166 2459 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
SHANK1Q9Y566 COMT-204ENST00000403710 1548 ntAPPRIS P3 TSL 5 BASIC21.48■■□□□ 1.03
SHANK1Q9Y566 SLC16A3-214ENST00000582743 2002 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
SHANK1Q9Y566 ZNF768-201ENST00000380412 2315 ntAPPRIS P2 TSL 1 (best) BASIC21.48■■□□□ 1.03
SHANK1Q9Y566 MFSD12-201ENST00000355415 2124 ntAPPRIS P3 TSL 1 (best) BASIC21.48■■□□□ 1.03
SHANK1Q9Y566 WTAP-206ENST00000621533 2109 ntAPPRIS P1 TSL 2 BASIC21.48■■□□□ 1.03
SHANK1Q9Y566 SLC25A6-201ENST00000381401 2062 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
SHANK1Q9Y566 KRTAP5-4-202ENST00000616115 660 ntAPPRIS ALT2 TSL 5 BASIC21.48■■□□□ 1.03
SHANK1Q9Y566 TMEM121-202ENST00000431372 1519 ntAPPRIS P1 TSL 5 BASIC21.48■■□□□ 1.03
SHANK1Q9Y566 RHEB-201ENST00000262187 2075 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
SHANK1Q9Y566 MTMR1-202ENST00000370390 2755 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
SHANK1Q9Y566 LRRC14B-201ENST00000328278 1573 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
SHANK1Q9Y566 ZNF428-201ENST00000300811 1412 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
SHANK1Q9Y566 AP2S1-201ENST00000263270 935 ntAPPRIS P3 TSL 1 (best) BASIC21.47■■□□□ 1.03
SHANK1Q9Y566 FGD5-AS1-204ENST00000430166 1184 ntTSL 2 BASIC21.47■■□□□ 1.03
SHANK1Q9Y566 AC009531.1-201ENST00000442323 580 ntTSL 4 BASIC21.47■■□□□ 1.03
SHANK1Q9Y566 CLPSL2-201ENST00000360454 488 ntAPPRIS ALT2 TSL 1 (best) BASIC21.47■■□□□ 1.03
SHANK1Q9Y566 FBXO7-206ENST00000452138 1535 ntTSL 2 BASIC21.47■■□□□ 1.03
SHANK1Q9Y566 BX255925.1-201ENST00000566954 1854 ntBASIC21.47■■□□□ 1.03
SHANK1Q9Y566 YTHDF1-201ENST00000370334 747 ntTSL 3 BASIC21.46■■□□□ 1.03
SHANK1Q9Y566 C12orf75-207ENST00000552457 689 ntTSL 5 BASIC21.46■■□□□ 1.03
SHANK1Q9Y566 AC011551.1-201ENST00000614101 683 ntBASIC21.46■■□□□ 1.03
SHANK1Q9Y566 AC106739.1-201ENST00000617035 715 ntBASIC21.46■■□□□ 1.03
SHANK1Q9Y566 TOMM40-203ENST00000426677 1725 ntAPPRIS P2 TSL 1 (best) BASIC21.46■■□□□ 1.03
SHANK1Q9Y566 RCAN1-201ENST00000313806 2490 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
SHANK1Q9Y566 AC009690.3-201ENST00000569547 1902 ntAPPRIS P1 TSL 2 BASIC21.46■■□□□ 1.03
SHANK1Q9Y566 TMEM55B-201ENST00000250489 1961 ntAPPRIS P3 TSL 1 (best) BASIC21.45■■□□□ 1.02
SHANK1Q9Y566 HOMER2-202ENST00000450735 1950 ntAPPRIS ALT2 TSL 1 (best) BASIC21.45■■□□□ 1.02
SHANK1Q9Y566 MRPL41-201ENST00000371443 1262 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
SHANK1Q9Y566 ZNRF1-205ENST00000566250 1069 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
SHANK1Q9Y566 ZNRF1-206ENST00000567962 1234 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
SHANK1Q9Y566 IHH-201ENST00000295731 2023 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
SHANK1Q9Y566 TK2-202ENST00000417693 1046 ntTSL 2 BASIC21.44■■□□□ 1.02
SHANK1Q9Y566 H2AFB1-201ENST00000620016 587 ntAPPRIS P1 BASIC21.44■■□□□ 1.02
SHANK1Q9Y566 PSKH1-202ENST00000570631 1509 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
SHANK1Q9Y566 EPM2A-208ENST00000618445 1694 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
SHANK1Q9Y566 SNRNP70-206ENST00000598441 1574 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
SHANK1Q9Y566 EEF1D-203ENST00000419152 1452 ntAPPRIS ALT2 TSL 5 BASIC21.44■■□□□ 1.02
SHANK1Q9Y566 CCKBR-201ENST00000334619 2121 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
SHANK1Q9Y566 DGAT1-201ENST00000332324 1473 ntTSL 5 BASIC21.43■■□□□ 1.02
SHANK1Q9Y566 RALB-203ENST00000420510 1252 ntAPPRIS P1 TSL 2 BASIC21.43■■□□□ 1.02
SHANK1Q9Y566 DNAJC21-201ENST00000342382 2309 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
SHANK1Q9Y566 SURF2-201ENST00000371964 842 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
SHANK1Q9Y566 PARD6B-202ENST00000396039 522 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
SHANK1Q9Y566 AL031432.3-201ENST00000607698 485 ntBASIC21.43■■□□□ 1.02
SHANK1Q9Y566 LINC01003-201ENST00000564834 1764 ntBASIC21.42■■□□□ 1.02
SHANK1Q9Y566 C8orf58-202ENST00000409586 2021 ntAPPRIS ALT2 TSL 2 BASIC21.42■■□□□ 1.02
SHANK1Q9Y566 ROM1-201ENST00000278833 1878 ntAPPRIS P2 TSL 1 (best) BASIC21.42■■□□□ 1.02
SHANK1Q9Y566 AK3-203ENST00000447596 705 ntTSL 2 BASIC21.42■■□□□ 1.02
SHANK1Q9Y566 AC019163.1-201ENST00000512634 610 ntTSL 2 BASIC21.42■■□□□ 1.02
SHANK1Q9Y566 HMX2-201ENST00000339992 1628 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
SHANK1Q9Y566 RPP38-201ENST00000378197 1457 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
SHANK1Q9Y566 MRAP2-201ENST00000257776 2153 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
SHANK1Q9Y566 EVC-203ENST00000509451 1960 ntTSL 1 (best) BASIC21.42■■□□□ 1.02
SHANK1Q9Y566 KRAS-204ENST00000557334 1052 ntTSL 5 BASIC21.41■■□□□ 1.02
SHANK1Q9Y566 LINC01632-201ENST00000615763 496 ntTSL 3 BASIC21.41■■□□□ 1.02
SHANK1Q9Y566 CDK2AP1-201ENST00000261692 1625 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.02
SHANK1Q9Y566 ABHD17C-202ENST00000558464 1976 ntTSL 1 (best) BASIC21.41■■□□□ 1.02
SHANK1Q9Y566 MADCAM1-202ENST00000346144 1309 ntAPPRIS ALT2 TSL 1 (best) BASIC21.41■■□□□ 1.02
SHANK1Q9Y566 SUMF1-202ENST00000383843 1447 ntTSL 2 BASIC21.4■■□□□ 1.02
SHANK1Q9Y566 SNTB1-202ENST00000517992 2273 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
SHANK1Q9Y566 AC105935.1-201ENST00000424174 422 ntTSL 3 BASIC21.4■■□□□ 1.02
SHANK1Q9Y566 SSR2-210ENST00000480567 895 ntAPPRIS P1 TSL 2 BASIC21.4■■□□□ 1.02
SHANK1Q9Y566 C15orf59-201ENST00000379822 1342 ntAPPRIS P1 TSL 1 (best) BASIC21.4■■□□□ 1.02
SHANK1Q9Y566 ARMC10-205ENST00000428183 2445 ntTSL 1 (best) BASIC21.4■■□□□ 1.02
SHANK1Q9Y566 THRA-204ENST00000546243 1909 ntAPPRIS P1 TSL 2 BASIC21.39■■□□□ 1.02
SHANK1Q9Y566 AF131216.4-201ENST00000638924 1588 ntBASIC21.39■■□□□ 1.02
SHANK1Q9Y566 RHOQ-201ENST00000238738 2975 ntAPPRIS P1 TSL 1 (best) BASIC21.39■■□□□ 1.02
SHANK1Q9Y566 TRIM7-202ENST00000334421 1228 ntTSL 1 (best) BASIC21.39■■□□□ 1.01
SHANK1Q9Y566 KRTAP5-4-201ENST00000399682 1181 ntAPPRIS P5 BASIC21.39■■□□□ 1.01
SHANK1Q9Y566 LGR4-203ENST00000480977 492 ntTSL 2 BASIC21.39■■□□□ 1.01
SHANK1Q9Y566 RASGEF1B-208ENST00000510780 539 ntTSL 3 BASIC21.39■■□□□ 1.01
SHANK1Q9Y566 MYL5-208ENST00000511290 781 ntTSL 1 (best) BASIC21.39■■□□□ 1.01
SHANK1Q9Y566 RASGEF1B-209ENST00000512343 498 ntTSL 3 BASIC21.39■■□□□ 1.01
SHANK1Q9Y566 AC104564.3-201ENST00000582367 638 ntBASIC21.39■■□□□ 1.01
SHANK1Q9Y566 ACBD4-216ENST00000619916 1276 ntTSL 5 BASIC21.39■■□□□ 1.01
SHANK1Q9Y566 CA9-204ENST00000617161 1374 ntTSL 1 (best) BASIC21.39■■□□□ 1.01
Retrieved 100 of 98,524 protein–RNA pairs in 152.4 ms