Protein–RNA interactions for Protein: P53804

TTC3, E3 ubiquitin-protein ligase TTC3, humanhuman

Predictions only

Length 2,025 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TTC3P53804 MIR4466-201ENST00000606121 54 ntBASIC25.73■■□□□ 1.71
TTC3P53804 CARM1-202ENST00000344150 2722 ntAPPRIS ALT2 TSL 5 BASIC25.73■■□□□ 1.71
TTC3P53804 LSM4-201ENST00000252816 986 ntTSL 2 BASIC25.73■■□□□ 1.71
TTC3P53804 MTDHP2-201ENST00000601468 714 ntBASIC25.73■■□□□ 1.71
TTC3P53804 PIK3R2-207ENST00000617130 2187 ntAPPRIS P1 TSL 1 (best) BASIC25.72■■□□□ 1.71
TTC3P53804 IL15RA-209ENST00000397255 759 ntAPPRIS ALT2 TSL 5 BASIC25.72■■□□□ 1.71
TTC3P53804 RPP21-222ENST00000433076 577 ntTSL 2 BASIC25.72■■□□□ 1.71
TTC3P53804 IL15RA-216ENST00000530685 660 ntTSL 5 BASIC25.72■■□□□ 1.71
TTC3P53804 CALM1-203ENST00000544280 1064 ntTSL 1 (best) BASIC25.72■■□□□ 1.71
TTC3P53804 FAM228B-208ENST00000613899 1238 ntAPPRIS ALT2 TSL 1 (best) BASIC25.72■■□□□ 1.71
TTC3P53804 EXOG-217ENST00000630638 197 ntTSL 5 BASIC25.72■■□□□ 1.71
TTC3P53804 TMEM203-201ENST00000343666 1557 ntAPPRIS P1 BASIC25.72■■□□□ 1.71
TTC3P53804 TOP1MT-208ENST00000519148 1868 ntTSL 2 BASIC25.72■■□□□ 1.71
TTC3P53804 HOOK2-201ENST00000264827 2603 ntAPPRIS P1 TSL 1 (best) BASIC25.72■■□□□ 1.71
TTC3P53804 RTN2-208ENST00000590526 2357 ntTSL 5 BASIC25.72■■□□□ 1.71
TTC3P53804 AF131216.4-201ENST00000638924 1588 ntBASIC25.71■■□□□ 1.71
TTC3P53804 CTAG1B-202ENST00000359887 998 ntTSL 2 BASIC25.71■■□□□ 1.71
TTC3P53804 AL512631.2-201ENST00000604634 923 ntBASIC25.71■■□□□ 1.71
TTC3P53804 FAAH-201ENST00000243167 2094 ntAPPRIS P1 TSL 1 (best) BASIC25.71■■□□□ 1.71
TTC3P53804 SLC25A6-201ENST00000381401 2062 ntAPPRIS P1 TSL 1 (best) BASIC25.71■■□□□ 1.71
TTC3P53804 AL136116.3-201ENST00000402907 1138 ntBASIC25.71■■□□□ 1.71
TTC3P53804 TMC6-218ENST00000591436 1155 ntTSL 1 (best) BASIC25.71■■□□□ 1.71
TTC3P53804 ADRM1-205ENST00000620230 1361 ntTSL 5 BASIC25.71■■□□□ 1.71
TTC3P53804 TANGO2-214ENST00000447208 2086 ntTSL 3 BASIC25.7■■□□□ 1.71
TTC3P53804 C11orf80-210ENST00000527634 1666 ntAPPRIS ALT2 TSL 5 BASIC25.7■■□□□ 1.71
TTC3P53804 PCGF3-202ENST00000400151 1175 ntTSL 2 BASIC25.7■■□□□ 1.7
TTC3P53804 C12orf75-207ENST00000552457 689 ntTSL 5 BASIC25.7■■□□□ 1.7
TTC3P53804 ZIC2-201ENST00000376335 2983 ntAPPRIS P1 TSL 1 (best) BASIC25.7■■□□□ 1.7
TTC3P53804 HNRNPD-203ENST00000353341 1585 ntAPPRIS ALT1 TSL 1 (best) BASIC25.7■■□□□ 1.7
TTC3P53804 FSD1-204ENST00000597590 1634 ntTSL 5 BASIC25.7■■□□□ 1.7
TTC3P53804 LINC01970-201ENST00000581489 1810 ntTSL 1 (best) BASIC25.7■■□□□ 1.7
TTC3P53804 TMEM80-201ENST00000397510 1094 ntAPPRIS P2 TSL 5 BASIC25.7■■□□□ 1.7
TTC3P53804 RNF225-201ENST00000601382 990 ntAPPRIS P1 BASIC25.7■■□□□ 1.7
TTC3P53804 AL139246.5-201ENST00000606645 996 ntBASIC25.7■■□□□ 1.7
TTC3P53804 Z98883.1-202ENST00000635107 1289 ntTSL 5 BASIC25.7■■□□□ 1.7
TTC3P53804 HOXB3-201ENST00000311626 2642 ntAPPRIS P1 TSL 1 (best) BASIC25.69■■□□□ 1.7
TTC3P53804 CNNM2-201ENST00000369875 2059 ntTSL 1 (best) BASIC25.69■■□□□ 1.7
TTC3P53804 LRRC1-201ENST00000370882 808 ntTSL 3 BASIC25.69■■□□□ 1.7
TTC3P53804 CDKN2A-208ENST00000498124 880 ntTSL 1 (best) BASIC25.69■■□□□ 1.7
TTC3P53804 PRSS21-201ENST00000005995 1101 ntAPPRIS P1 TSL 1 (best) BASIC25.69■■□□□ 1.7
TTC3P53804 AC005551.1-201ENST00000641816 493 ntAPPRIS P1 BASIC25.69■■□□□ 1.7
TTC3P53804 TSPAN10-203ENST00000574882 1837 ntAPPRIS P2 TSL 1 (best) BASIC25.68■■□□□ 1.7
TTC3P53804 TK2-202ENST00000417693 1046 ntTSL 2 BASIC25.68■■□□□ 1.7
TTC3P53804 NALT1-201ENST00000429224 738 ntTSL 5 BASIC25.68■■□□□ 1.7
TTC3P53804 GAK-223ENST00000628912 497 ntTSL 5 BASIC25.68■■□□□ 1.7
TTC3P53804 TSPAN4-203ENST00000397397 1423 ntAPPRIS P1 TSL 1 (best) BASIC25.68■■□□□ 1.7
TTC3P53804 PYCARD-202ENST00000350605 696 ntTSL 1 (best) BASIC25.68■■□□□ 1.7
TTC3P53804 AC092807.3-205ENST00000467666 531 ntTSL 3 BASIC25.68■■□□□ 1.7
TTC3P53804 PAOX-203ENST00000357296 1633 ntTSL 1 (best) BASIC25.67■■□□□ 1.7
TTC3P53804 SLC35A2-209ENST00000452555 1563 ntTSL 2 BASIC25.67■■□□□ 1.7
TTC3P53804 HDGFL1-201ENST00000510882 2174 ntAPPRIS P1 BASIC25.67■■□□□ 1.7
TTC3P53804 FHL2-203ENST00000358129 1578 ntTSL 5 BASIC25.67■■□□□ 1.7
TTC3P53804 CCNJL-201ENST00000257536 1848 ntAPPRIS P1 TSL 2 BASIC25.67■■□□□ 1.7
TTC3P53804 UBALD1-201ENST00000283474 1413 ntAPPRIS P1 TSL 1 (best) BASIC25.67■■□□□ 1.7
TTC3P53804 HDHD5-203ENST00000399852 1118 ntTSL 3 BASIC25.66■■□□□ 1.7
TTC3P53804 FEZ1-205ENST00000524435 750 ntTSL 2 BASIC25.66■■□□□ 1.7
TTC3P53804 PSMG1-201ENST00000331573 2154 ntAPPRIS P1 TSL 1 (best) BASIC25.66■■□□□ 1.7
TTC3P53804 TMEM55B-201ENST00000250489 1961 ntAPPRIS P3 TSL 1 (best) BASIC25.66■■□□□ 1.7
TTC3P53804 PLEKHO1-202ENST00000369126 1809 ntTSL 1 (best) BASIC25.66■■□□□ 1.7
TTC3P53804 FAM66E-202ENST00000533615 2087 ntTSL 2 BASIC25.65■■□□□ 1.7
TTC3P53804 ST6GALNAC6-205ENST00000373146 2460 ntAPPRIS P3 TSL 1 (best) BASIC25.65■■□□□ 1.7
TTC3P53804 MEIS3-204ENST00000558555 1715 ntAPPRIS ALT2 TSL 5 BASIC25.65■■□□□ 1.7
TTC3P53804 AC092343.1-201ENST00000500224 729 ntTSL 3 BASIC25.65■■□□□ 1.7
TTC3P53804 AL356740.2-201ENST00000601559 647 ntBASIC25.65■■□□□ 1.7
TTC3P53804 AL117336.3-202ENST00000605499 489 ntTSL 3 BASIC25.65■■□□□ 1.7
TTC3P53804 RALB-208ENST00000631312 311 ntTSL 5 BASIC25.65■■□□□ 1.7
TTC3P53804 RPP38-201ENST00000378197 1457 ntAPPRIS P1 TSL 1 (best) BASIC25.65■■□□□ 1.7
TTC3P53804 C19orf47-202ENST00000392035 2126 ntAPPRIS ALT2 TSL 1 (best) BASIC25.65■■□□□ 1.7
TTC3P53804 GPR160-201ENST00000355897 2039 ntAPPRIS P1 TSL 1 (best) BASIC25.65■■□□□ 1.7
TTC3P53804 EMC9-201ENST00000216799 835 ntAPPRIS P1 TSL 1 (best) BASIC25.64■■□□□ 1.69
TTC3P53804 MOB4-204ENST00000409360 1447 ntTSL 5 BASIC25.64■■□□□ 1.69
TTC3P53804 NDEL1-202ENST00000380025 2181 ntTSL 5 BASIC25.64■■□□□ 1.69
TTC3P53804 AQP1-202ENST00000409611 1140 ntTSL 1 (best) BASIC25.63■■□□□ 1.69
TTC3P53804 PAIP1-208ENST00000514514 1603 ntTSL 5 BASIC25.62■■□□□ 1.69
TTC3P53804 AC011511.4-201ENST00000586529 1850 ntAPPRIS P1 TSL 5 BASIC25.62■■□□□ 1.69
TTC3P53804 CLK2-203ENST00000368361 2166 ntAPPRIS ALT1 TSL 1 (best) BASIC25.62■■□□□ 1.69
TTC3P53804 DHRS11-215ENST00000618403 1598 ntAPPRIS P1 TSL 1 (best) BASIC25.62■■□□□ 1.69
TTC3P53804 PORCN-202ENST00000355961 1848 ntAPPRIS ALT1 TSL 1 (best) BASIC25.61■■□□□ 1.69
TTC3P53804 GTF2E2-201ENST00000355904 1762 ntAPPRIS P1 TSL 1 (best) BASIC25.61■■□□□ 1.69
TTC3P53804 USP2-204ENST00000525735 1704 ntAPPRIS ALT1 TSL 1 (best) BASIC25.61■■□□□ 1.69
TTC3P53804 NPW-201ENST00000329610 498 ntAPPRIS P2 TSL 1 (best) BASIC25.61■■□□□ 1.69
TTC3P53804 SSSCA1-AS1-201ENST00000567594 614 ntBASIC25.61■■□□□ 1.69
TTC3P53804 KCNJ4-201ENST00000303592 2065 ntAPPRIS P1 TSL 1 (best) BASIC25.6■■□□□ 1.69
TTC3P53804 TRIM7-202ENST00000334421 1228 ntTSL 1 (best) BASIC25.6■■□□□ 1.69
TTC3P53804 KDELR3-202ENST00000409006 931 ntTSL 1 (best) BASIC25.6■■□□□ 1.69
TTC3P53804 AL357078.1-201ENST00000448344 310 ntTSL 4 BASIC25.6■■□□□ 1.69
TTC3P53804 MCRIP1-210ENST00000576431 577 ntTSL 5 BASIC25.6■■□□□ 1.69
TTC3P53804 ANKS3-203ENST00000450067 2272 ntTSL 5 BASIC25.6■■□□□ 1.69
TTC3P53804 C2CD4D-201ENST00000454109 1757 ntAPPRIS P1 TSL 2 BASIC25.6■■□□□ 1.69
TTC3P53804 PKM-203ENST00000389093 2279 ntTSL 5 BASIC25.6■■□□□ 1.69
TTC3P53804 LY6H-205ENST00000615409 980 ntAPPRIS P3 TSL 1 (best) BASIC25.59■■□□□ 1.69
TTC3P53804 KAT5-208ENST00000530446 1697 ntTSL 1 (best) BASIC25.59■■□□□ 1.69
TTC3P53804 PLPPR3-204ENST00000520876 2328 ntAPPRIS ALT2 TSL 1 (best) BASIC25.59■■□□□ 1.69
TTC3P53804 POLR2F-211ENST00000488684 564 ntTSL 2 BASIC25.59■■□□□ 1.69
TTC3P53804 CHTF8-208ENST00000522091 863 ntTSL 2 BASIC25.59■■□□□ 1.69
TTC3P53804 PABPN1-207ENST00000556821 1220 ntTSL 2 BASIC25.59■■□□□ 1.69
TTC3P53804 EEF1D-203ENST00000419152 1452 ntAPPRIS ALT2 TSL 5 BASIC25.59■■□□□ 1.69
TTC3P53804 TMEM260-202ENST00000538838 1638 ntTSL 1 (best) BASIC25.59■■□□□ 1.69
TTC3P53804 IRAK1-205ENST00000429936 2127 ntTSL 5 BASIC25.58■■□□□ 1.69
TTC3P53804 DNAJC21-201ENST00000342382 2309 ntAPPRIS P1 TSL 1 (best) BASIC25.58■■□□□ 1.69
Retrieved 100 of 98,524 protein–RNA pairs in 21.3 ms