Protein–RNA interactions for Protein: O75127

PTCD1, Pentatricopeptide repeat-containing protein 1, mitochondrial, humanhuman

Known RBP Predictions only

Length 700 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD1O75127 SLC35A2-209ENST00000452555 1563 ntTSL 2 BASIC30.66■■■□□ 2.5
PTCD1O75127 CCNJL-201ENST00000257536 1848 ntAPPRIS P1 TSL 2 BASIC30.66■■■□□ 2.5
PTCD1O75127 ZNF74-204ENST00000405993 1839 ntAPPRIS ALT2 TSL 5 BASIC30.66■■■□□ 2.5
PTCD1O75127 IRAK1-205ENST00000429936 2127 ntTSL 5 BASIC30.65■■■□□ 2.5
PTCD1O75127 KRTAP5-1-201ENST00000382171 942 ntAPPRIS P1 BASIC30.65■■■□□ 2.5
PTCD1O75127 AL117336.3-202ENST00000605499 489 ntTSL 3 BASIC30.65■■■□□ 2.5
PTCD1O75127 Z98883.1-202ENST00000635107 1289 ntTSL 5 BASIC30.65■■■□□ 2.5
PTCD1O75127 FAM66E-202ENST00000533615 2087 ntTSL 2 BASIC30.65■■■□□ 2.5
PTCD1O75127 POLE2-201ENST00000216367 1776 ntAPPRIS P1 TSL 1 (best) BASIC30.64■■■□□ 2.5
PTCD1O75127 RAB40C-201ENST00000248139 2699 ntAPPRIS P1 TSL 1 (best) BASIC30.64■■■□□ 2.5
PTCD1O75127 TK2-202ENST00000417693 1046 ntTSL 2 BASIC30.64■■■□□ 2.5
PTCD1O75127 C12orf75-207ENST00000552457 689 ntTSL 5 BASIC30.64■■■□□ 2.5
PTCD1O75127 PRSS21-201ENST00000005995 1101 ntAPPRIS P1 TSL 1 (best) BASIC30.64■■■□□ 2.5
PTCD1O75127 AC005551.1-201ENST00000641816 493 ntAPPRIS P1 BASIC30.64■■■□□ 2.5
PTCD1O75127 KCNJ4-201ENST00000303592 2065 ntAPPRIS P1 TSL 1 (best) BASIC30.64■■■□□ 2.5
PTCD1O75127 SNX24-201ENST00000261369 2158 ntAPPRIS P1 TSL 1 (best) BASIC30.64■■■□□ 2.49
PTCD1O75127 LRRC1-201ENST00000370882 808 ntTSL 3 BASIC30.63■■■□□ 2.49
PTCD1O75127 FSD1-204ENST00000597590 1634 ntTSL 5 BASIC30.62■■■□□ 2.49
PTCD1O75127 JMJD1C-AS1-201ENST00000609436 1335 ntBASIC30.62■■■□□ 2.49
PTCD1O75127 ADRM1-205ENST00000620230 1361 ntTSL 5 BASIC30.62■■■□□ 2.49
PTCD1O75127 AQP1-202ENST00000409611 1140 ntTSL 1 (best) BASIC30.61■■■□□ 2.49
PTCD1O75127 AL357078.1-201ENST00000448344 310 ntTSL 4 BASIC30.61■■■□□ 2.49
PTCD1O75127 RNF225-201ENST00000601382 990 ntAPPRIS P1 BASIC30.61■■■□□ 2.49
PTCD1O75127 TSPAN4-203ENST00000397397 1423 ntAPPRIS P1 TSL 1 (best) BASIC30.61■■■□□ 2.49
PTCD1O75127 LYL1-201ENST00000264824 1490 ntAPPRIS P1 TSL 1 (best) BASIC30.61■■■□□ 2.49
PTCD1O75127 HNRNPD-203ENST00000353341 1585 ntAPPRIS ALT1 TSL 1 (best) BASIC30.61■■■□□ 2.49
PTCD1O75127 IL15RA-209ENST00000397255 759 ntAPPRIS ALT2 TSL 5 BASIC30.6■■■□□ 2.49
PTCD1O75127 AC079305.3-201ENST00000455416 218 ntTSL 5 BASIC30.6■■■□□ 2.49
PTCD1O75127 IL15RA-216ENST00000530685 660 ntTSL 5 BASIC30.6■■■□□ 2.49
PTCD1O75127 SLC25A39-203ENST00000537904 1274 ntTSL 2 BASIC30.6■■■□□ 2.49
PTCD1O75127 LINC01970-201ENST00000581489 1810 ntTSL 1 (best) BASIC30.6■■■□□ 2.49
PTCD1O75127 TMC6-218ENST00000591436 1155 ntTSL 1 (best) BASIC30.6■■■□□ 2.49
PTCD1O75127 TMEM9-201ENST00000367330 1959 ntAPPRIS P3 TSL 1 (best) BASIC30.59■■■□□ 2.49
PTCD1O75127 GTF2E2-201ENST00000355904 1762 ntAPPRIS P1 TSL 1 (best) BASIC30.59■■■□□ 2.49
PTCD1O75127 PDSS1-201ENST00000376215 1626 ntAPPRIS P1 TSL 1 (best) BASIC30.59■■■□□ 2.49
PTCD1O75127 RPP38-201ENST00000378197 1457 ntAPPRIS P1 TSL 1 (best) BASIC30.59■■■□□ 2.49
PTCD1O75127 TMEM80-201ENST00000397510 1094 ntAPPRIS P2 TSL 5 BASIC30.59■■■□□ 2.49
PTCD1O75127 PCGF3-202ENST00000400151 1175 ntTSL 2 BASIC30.59■■■□□ 2.49
PTCD1O75127 CLTA-204ENST00000433436 1235 ntAPPRIS ALT1 TSL 1 (best) BASIC30.59■■■□□ 2.49
PTCD1O75127 FEZ1-205ENST00000524435 750 ntTSL 2 BASIC30.59■■■□□ 2.49
PTCD1O75127 CLTA-209ENST00000538225 1181 ntTSL 2 BASIC30.59■■■□□ 2.49
PTCD1O75127 CLTA-210ENST00000540080 989 ntTSL 2 BASIC30.59■■■□□ 2.49
PTCD1O75127 MIR4466-201ENST00000606121 54 ntBASIC30.59■■■□□ 2.49
PTCD1O75127 C19orf47-202ENST00000392035 2126 ntAPPRIS ALT2 TSL 1 (best) BASIC30.59■■■□□ 2.49
PTCD1O75127 PORCN-202ENST00000355961 1848 ntAPPRIS ALT1 TSL 1 (best) BASIC30.59■■■□□ 2.49
PTCD1O75127 TMUB1-202ENST00000392818 1563 ntAPPRIS P1 TSL 1 (best) BASIC30.58■■■□□ 2.49
PTCD1O75127 ZNF775-201ENST00000329630 2257 ntAPPRIS P1 TSL 1 (best) BASIC30.58■■■□□ 2.49
PTCD1O75127 EMC9-201ENST00000216799 835 ntAPPRIS P1 TSL 1 (best) BASIC30.58■■■□□ 2.49
PTCD1O75127 CDKN2A-208ENST00000498124 880 ntTSL 1 (best) BASIC30.58■■■□□ 2.49
PTCD1O75127 FAM228B-208ENST00000613899 1238 ntAPPRIS ALT2 TSL 1 (best) BASIC30.58■■■□□ 2.49
PTCD1O75127 AF131216.4-201ENST00000638924 1588 ntBASIC30.58■■■□□ 2.49
PTCD1O75127 USP2-204ENST00000525735 1704 ntAPPRIS ALT1 TSL 1 (best) BASIC30.57■■■□□ 2.48
PTCD1O75127 NPW-201ENST00000329610 498 ntAPPRIS P2 TSL 1 (best) BASIC30.57■■■□□ 2.48
PTCD1O75127 KRAS-204ENST00000557334 1052 ntTSL 5 BASIC30.57■■■□□ 2.48
PTCD1O75127 AL356740.2-201ENST00000601559 647 ntBASIC30.57■■■□□ 2.48
PTCD1O75127 AC110285.6-201ENST00000617652 491 ntBASIC30.57■■■□□ 2.48
PTCD1O75127 EXOG-217ENST00000630638 197 ntTSL 5 BASIC30.57■■■□□ 2.48
PTCD1O75127 TMEM55B-201ENST00000250489 1961 ntAPPRIS P3 TSL 1 (best) BASIC30.57■■■□□ 2.48
PTCD1O75127 DHRS11-215ENST00000618403 1598 ntAPPRIS P1 TSL 1 (best) BASIC30.57■■■□□ 2.48
PTCD1O75127 TOP1MT-208ENST00000519148 1868 ntTSL 2 BASIC30.57■■■□□ 2.48
PTCD1O75127 TNFSF12-TNFSF13-201ENST00000293826 1816 ntAPPRIS P1 TSL 1 (best) BASIC30.57■■■□□ 2.48
PTCD1O75127 MOB4-204ENST00000409360 1447 ntTSL 5 BASIC30.56■■■□□ 2.48
PTCD1O75127 PAOX-203ENST00000357296 1633 ntTSL 1 (best) BASIC30.55■■■□□ 2.48
PTCD1O75127 PYCARD-202ENST00000350605 696 ntTSL 1 (best) BASIC30.55■■■□□ 2.48
PTCD1O75127 AC011511.4-201ENST00000586529 1850 ntAPPRIS P1 TSL 5 BASIC30.55■■■□□ 2.48
PTCD1O75127 PSMG1-201ENST00000331573 2154 ntAPPRIS P1 TSL 1 (best) BASIC30.54■■■□□ 2.48
PTCD1O75127 MEIS3-204ENST00000558555 1715 ntAPPRIS ALT2 TSL 5 BASIC30.54■■■□□ 2.48
PTCD1O75127 EIF3J-203ENST00000535391 925 ntTSL 2 BASIC30.54■■■□□ 2.48
PTCD1O75127 TSPAN10-203ENST00000574882 1837 ntAPPRIS P2 TSL 1 (best) BASIC30.54■■■□□ 2.48
PTCD1O75127 PIK3R2-207ENST00000617130 2187 ntAPPRIS P1 TSL 1 (best) BASIC30.54■■■□□ 2.48
PTCD1O75127 AC004540.2-202ENST00000451264 508 ntTSL 2 BASIC30.53■■■□□ 2.48
PTCD1O75127 ABL1-201ENST00000318560 5766 ntTSL 1 (best) BASIC30.53■■■□□ 2.48
PTCD1O75127 FOXO3B-201ENST00000395675 1928 ntBASIC30.53■■■□□ 2.48
PTCD1O75127 C11orf80-210ENST00000527634 1666 ntAPPRIS ALT2 TSL 5 BASIC30.52■■■□□ 2.48
PTCD1O75127 PAIP1-208ENST00000514514 1603 ntTSL 5 BASIC30.52■■■□□ 2.48
PTCD1O75127 QDPR-206ENST00000508623 601 ntTSL 3 BASIC30.52■■■□□ 2.48
PTCD1O75127 SSSCA1-AS1-201ENST00000567594 614 ntBASIC30.52■■■□□ 2.48
PTCD1O75127 LY6H-205ENST00000615409 980 ntAPPRIS P3 TSL 1 (best) BASIC30.52■■■□□ 2.48
PTCD1O75127 RDH14-201ENST00000381249 1587 ntAPPRIS P1 TSL 1 (best) BASIC30.52■■■□□ 2.48
PTCD1O75127 ANKS3-203ENST00000450067 2272 ntTSL 5 BASIC30.52■■■□□ 2.48
PTCD1O75127 CLK2-203ENST00000368361 2166 ntAPPRIS ALT1 TSL 1 (best) BASIC30.51■■■□□ 2.48
PTCD1O75127 AC096631.2-201ENST00000436136 790 ntBASIC30.51■■■□□ 2.47
PTCD1O75127 AK3-203ENST00000447596 705 ntTSL 2 BASIC30.51■■■□□ 2.47
PTCD1O75127 AC092807.3-205ENST00000467666 531 ntTSL 3 BASIC30.51■■■□□ 2.47
PTCD1O75127 EPHA10-211ENST00000540011 720 ntTSL 5 BASIC30.51■■■□□ 2.47
PTCD1O75127 FHL2-203ENST00000358129 1578 ntTSL 5 BASIC30.5■■■□□ 2.47
PTCD1O75127 TANGO2-214ENST00000447208 2086 ntTSL 3 BASIC30.5■■■□□ 2.47
PTCD1O75127 NKX2-8-201ENST00000258829 1261 ntAPPRIS P1 TSL 1 (best) BASIC30.5■■■□□ 2.47
PTCD1O75127 HES4-201ENST00000304952 899 ntAPPRIS P1 TSL 1 (best) BASIC30.5■■■□□ 2.47
PTCD1O75127 MCRIP1-202ENST00000457257 942 ntTSL 3 BASIC30.5■■■□□ 2.47
PTCD1O75127 CHTF8-208ENST00000522091 863 ntTSL 2 BASIC30.5■■■□□ 2.47
PTCD1O75127 PPP1R14A-205ENST00000591585 949 ntTSL 2 BASIC30.5■■■□□ 2.47
PTCD1O75127 HAND2-201ENST00000359562 2780 ntAPPRIS P1 TSL 1 (best) BASIC30.5■■■□□ 2.47
PTCD1O75127 HDGFL1-201ENST00000510882 2174 ntAPPRIS P1 BASIC30.49■■■□□ 2.47
PTCD1O75127 GABRA5-203ENST00000400081 2761 ntAPPRIS P1 TSL 5 BASIC30.49■■■□□ 2.47
PTCD1O75127 C2CD4D-201ENST00000454109 1757 ntAPPRIS P1 TSL 2 BASIC30.49■■■□□ 2.47
PTCD1O75127 ZNF821-201ENST00000313565 1874 ntTSL 1 (best) BASIC30.49■■■□□ 2.47
PTCD1O75127 SENCR-201ENST00000526269 1298 ntTSL 1 (best) BASIC30.49■■■□□ 2.47
PTCD1O75127 TOLLIP-208ENST00000527938 549 ntTSL 4 BASIC30.49■■■□□ 2.47
PTCD1O75127 AL512631.2-201ENST00000604634 923 ntBASIC30.49■■■□□ 2.47
Retrieved 100 of 98,524 protein–RNA pairs in 127.8 ms