Protein–RNA interactions for Protein: Q6ZN17

LIN28B, Protein lin-28 homolog B, humanhuman

Known RBP eCLIP

Length 250 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIN28BQ6ZN17 CPNE1-224ENST00000483359 1975 ntTSL 519.6■□□□□ 0.731e-8■■□□□ 11.7
LIN28BQ6ZN17 AL109827.1-203ENST00000541176 872 ntAPPRIS P5 TSL 2 BASIC19.03■□□□□ 0.641e-8■■□□□ 11.7
LIN28BQ6ZN17 CPNE1-208ENST00000414711 673 ntTSL 518.83■□□□□ 0.61e-8■■□□□ 11.7
LIN28BQ6ZN17 CPNE1-215ENST00000437100 826 ntTSL 516.26■□□□□ 0.191e-8■■□□□ 11.7
LIN28BQ6ZN17 CPNE1-206ENST00000412056 998 ntTSL 315.46■□□□□ 0.071e-8■■□□□ 11.7
LIN28BQ6ZN17 CPNE1-201ENST00000317677 1961 ntTSL 1 (best) BASIC13.36□□□□□ -0.271e-8■■□□□ 11.7
LIN28BQ6ZN17 CPNE1-214ENST00000435747 400 ntTSL 312.39□□□□□ -0.431e-8■■□□□ 11.7
LIN28BQ6ZN17 AL109827.1-202ENST00000441563 611 ntAPPRIS ALT2 TSL 211.18□□□□□ -0.621e-8■■□□□ 11.7
LIN28BQ6ZN17 AL109827.1-201ENST00000454607 679 ntAPPRIS ALT2 TSL 211.18□□□□□ -0.621e-8■■□□□ 11.7
LIN28BQ6ZN17 CPNE1-218ENST00000439806 748 ntTSL 510.44□□□□□ -0.741e-8■■□□□ 11.7
LIN28BQ6ZN17 RBM12-203ENST00000374114 6662 ntAPPRIS P1 TSL 1 (best) BASIC8.65□□□□□ -1.021e-8■■□□□ 11.7
LIN28BQ6ZN17 PCNP-202ENST00000460231 2165 ntTSL 1 (best)15.32■□□□□ 0.042e-6■■□□□ 11.7
LIN28BQ6ZN17 PCNP-201ENST00000265260 2342 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.052e-6■■□□□ 11.7
LIN28BQ6ZN17 PCNP-204ENST00000469941 2028 ntTSL 1 (best) BASIC12.61□□□□□ -0.392e-6■■□□□ 11.7
LIN28BQ6ZN17 MGAT5-202ENST00000409645 8252 ntAPPRIS P1 TSL 5 BASIC8.18□□□□□ -1.14e-8■■□□□ 11.7
LIN28BQ6ZN17 MGAT5-201ENST00000281923 8144 ntAPPRIS P1 TSL 1 (best) BASIC7.98□□□□□ -1.134e-8■■□□□ 11.7
LIN28BQ6ZN17 HNRNPU-217ENST00000638952 5678 ntTSL 516.15■□□□□ 0.182e-10■■□□□ 11.7
LIN28BQ6ZN17 HNRNPU-228ENST00000640306 2917 ntTSL 515.93■□□□□ 0.142e-10■■□□□ 11.7
LIN28BQ6ZN17 HNRNPU-214ENST00000638475 2698 ntTSL 515.75■□□□□ 0.112e-10■■□□□ 11.7
LIN28BQ6ZN17 HNRNPU-209ENST00000476241 4844 ntTSL 515.55■□□□□ 0.082e-10■■□□□ 11.7
LIN28BQ6ZN17 HNRNPU-205ENST00000444376 6827 ntAPPRIS P3 TSL 1 (best) BASIC15.4■□□□□ 0.062e-10■■□□□ 11.7
LIN28BQ6ZN17 HNRNPU-201ENST00000283179 3120 ntAPPRIS ALT2 TSL 5 BASIC14.49□□□□□ -0.092e-10■■□□□ 11.7
LIN28BQ6ZN17 HNRNPU-226ENST00000640218 6858 ntAPPRIS ALT2 TSL 1 (best) BASIC14.06□□□□□ -0.162e-10■■□□□ 11.7
LIN28BQ6ZN17 MKRN1-214ENST00000495305 1390 ntTSL 231.88■■■□□ 2.699e-8■■□□□ 11.7
LIN28BQ6ZN17 MKRN1-212ENST00000481705 636 ntTSL 529.7■■■□□ 2.359e-8■■□□□ 11.7
LIN28BQ6ZN17 MKRN1-216ENST00000498535 607 ntTSL 229.21■■■□□ 2.279e-8■■□□□ 11.7
LIN28BQ6ZN17 MKRN1-202ENST00000443720 1601 ntAPPRIS ALT2 TSL 1 (best) BASIC27.75■■■□□ 2.039e-8■■□□□ 11.7
LIN28BQ6ZN17 MKRN1-215ENST00000496169 1625 ntTSL 226.22■■□□□ 1.799e-8■■□□□ 11.7
LIN28BQ6ZN17 MKRN1-208ENST00000474576 1661 ntTSL 5 BASIC21.06■□□□□ 0.969e-8■■□□□ 11.7
LIN28BQ6ZN17 MKRN1-207ENST00000473444 720 ntTSL 321.01■□□□□ 0.959e-8■■□□□ 11.7
LIN28BQ6ZN17 MKRN1-206ENST00000471104 1053 ntTSL 520.68■□□□□ 0.99e-8■■□□□ 11.7
LIN28BQ6ZN17 MKRN1-204ENST00000467513 1133 ntTSL 516.02■□□□□ 0.169e-8■■□□□ 11.7
LIN28BQ6ZN17 MKRN1-210ENST00000475180 560 ntTSL 512.46□□□□□ -0.419e-8■■□□□ 11.7
LIN28BQ6ZN17 MKRN1-211ENST00000480552 906 ntTSL 5 BASIC11.29□□□□□ -0.69e-8■■□□□ 11.7
LIN28BQ6ZN17 MKRN1-213ENST00000494939 784 ntTSL 39.4□□□□□ -0.99e-8■■□□□ 11.7
LIN28BQ6ZN17 RPS3A-206ENST00000507485 1526 ntTSL 1 (best)10.46□□□□□ -0.744e-13■■□□□ 11.7
LIN28BQ6ZN17 RPS3A-214ENST00000515818 572 ntTSL 55.06□□□□□ -1.64e-13■■□□□ 11.7
LIN28BQ6ZN17 ALAS2-203ENST00000396198 1936 ntTSL 5 BASIC17.76■□□□□ 0.431e-6■■□□□ 11.7
LIN28BQ6ZN17 ALAS2-202ENST00000335854 1795 ntTSL 2 BASIC15.95■□□□□ 0.141e-6■■□□□ 11.7
LIN28BQ6ZN17 ALAS2-201ENST00000330807 2027 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.021e-6■■□□□ 11.7
LIN28BQ6ZN17 RPL4-204ENST00000563473 475 ntTSL 36.6□□□□□ -1.358e-57■■□□□ 11.7
LIN28BQ6ZN17 CDK13-202ENST00000340829 5066 ntAPPRIS ALT1 TSL 1 (best) BASIC18.73■□□□□ 0.598e-9■■□□□ 11.7
LIN28BQ6ZN17 CDK13-207ENST00000613626 3099 ntTSL 5 BASIC18.08■□□□□ 0.488e-9■■□□□ 11.7
LIN28BQ6ZN17 CDK13-201ENST00000181839 7298 ntAPPRIS P4 TSL 1 (best) BASIC17.17■□□□□ 0.348e-9■■□□□ 11.7
LIN28BQ6ZN17 ATP5I-203ENST00000506525 496 ntTSL 1 (best)15.65■□□□□ 0.18e-9■■□□□ 11.7
LIN28BQ6ZN17 CDK13-206ENST00000611390 2222 ntTSL 5 BASIC12.08□□□□□ -0.488e-9■■□□□ 11.7
LIN28BQ6ZN17 CDK13-205ENST00000484589 2111 ntTSL 1 (best)9.29□□□□□ -0.928e-9■■□□□ 11.7
LIN28BQ6ZN17 ATP5I-205ENST00000515202 393 ntTSL 28.87□□□□□ -0.998e-9■■□□□ 11.7
LIN28BQ6ZN17 ATP5I-204ENST00000515116 247 ntTSL 25.71□□□□□ -1.58e-9■■□□□ 11.7
LIN28BQ6ZN17 ERBB3-213ENST00000549832 3289 ntTSL 2 BASIC7.67□□□□□ -1.184e-10■■□□□ 11.7
LIN28BQ6ZN17 CEP192-204ENST00000507064 706 ntTSL 312.18□□□□□ -0.465e-11■■□□□ 11.7
LIN28BQ6ZN17 FNDC3B-204ENST00000421757 946 ntTSL 1 (best) BASIC24.03■■□□□ 1.445e-6■■□□□ 11.7
LIN28BQ6ZN17 FNDC3B-207ENST00000469491 2916 ntTSL 217.51■□□□□ 0.395e-6■■□□□ 11.7
LIN28BQ6ZN17 FNDC3B-202ENST00000415807 5083 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.525e-6■■□□□ 11.7
LIN28BQ6ZN17 FNDC3B-205ENST00000423424 408 ntTSL 3 BASIC9.7□□□□□ -0.865e-6■■□□□ 11.7
LIN28BQ6ZN17 FNDC3B-201ENST00000336824 7904 ntAPPRIS P1 TSL 1 (best) BASIC9.42□□□□□ -0.95e-6■■□□□ 11.7
LIN28BQ6ZN17 FNDC3B-203ENST00000416957 3684 ntAPPRIS P1 TSL 1 (best) BASIC8.06□□□□□ -1.125e-6■■□□□ 11.7
LIN28BQ6ZN17 LARP1-208ENST00000518892 399 ntTSL 323.89■■□□□ 1.415e-7■■□□□ 11.7
LIN28BQ6ZN17 PDXDC1-207ENST00000562119 884 ntTSL 523.63■■□□□ 1.374e-6■■□□□ 11.7
LIN28BQ6ZN17 RNF149-201ENST00000295317 2458 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.084e-6■■□□□ 11.7
LIN28BQ6ZN17 MGAT1-204ENST00000427865 1919 ntAPPRIS P1 TSL 2 BASIC21.09■□□□□ 0.974e-6■■□□□ 11.7
LIN28BQ6ZN17 RNF149-202ENST00000424632 2010 ntTSL 220.72■□□□□ 0.914e-6■■□□□ 11.7
LIN28BQ6ZN17 KLC4-217ENST00000481499 1465 ntTSL 420.71■□□□□ 0.911e-6■■□□□ 11.7
LIN28BQ6ZN17 FLVCR1-201ENST00000366971 5939 ntAPPRIS P1 TSL 1 (best) BASIC18.98■□□□□ 0.634e-6■■□□□ 11.7
LIN28BQ6ZN17 UQCC1-219ENST00000491125 990 ntTSL 518.39■□□□□ 0.534e-6■■□□□ 11.7
LIN28BQ6ZN17 KLC4-212ENST00000470728 872 ntTSL 517.75■□□□□ 0.431e-6■■□□□ 11.7
LIN28BQ6ZN17 KLC4-205ENST00000458460 1251 ntTSL 1 (best) BASIC17.38■□□□□ 0.371e-6■■□□□ 11.7
LIN28BQ6ZN17 ETFB-201ENST00000309244 900 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.373e-8■■□□□ 11.7
LIN28BQ6ZN17 MGAT1-203ENST00000393340 3077 ntAPPRIS P1 TSL 2 BASIC17.12■□□□□ 0.334e-6■■□□□ 11.7
LIN28BQ6ZN17 KLC4-204ENST00000453940 1945 ntTSL 2 BASIC16.43■□□□□ 0.221e-6■■□□□ 11.7
LIN28BQ6ZN17 KLC4-202ENST00000347162 2404 ntAPPRIS ALT2 TSL 1 (best) BASIC15.9■□□□□ 0.141e-6■■□□□ 11.7
LIN28BQ6ZN17 UQCC1-213ENST00000453855 1035 ntTSL 415.53■□□□□ 0.084e-6■■□□□ 11.7
LIN28BQ6ZN17 MGAT1-201ENST00000307826 2761 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.054e-6■■□□□ 11.7
LIN28BQ6ZN17 PDXDC1-218ENST00000627450 2683 ntTSL 2 BASIC14.35□□□□□ -0.114e-6■■□□□ 11.7
LIN28BQ6ZN17 UQCC1-210ENST00000424405 758 ntTSL 514.29□□□□□ -0.124e-6■■□□□ 11.7
LIN28BQ6ZN17 MGAT1-202ENST00000333055 8863 ntAPPRIS P1 TSL 2 BASIC13.7□□□□□ -0.224e-6■■□□□ 11.7
LIN28BQ6ZN17 UQCC1-209ENST00000397556 1284 ntTSL 1 (best) BASIC13.5□□□□□ -0.254e-6■■□□□ 11.7
LIN28BQ6ZN17 KLC4-203ENST00000394056 2770 ntAPPRIS ALT2 TSL 2 BASIC13.43□□□□□ -0.261e-6■■□□□ 11.7
LIN28BQ6ZN17 UQCC1-214ENST00000457259 1987 ntTSL 1 (best)13.11□□□□□ -0.314e-6■■□□□ 11.7
LIN28BQ6ZN17 MGAT1-205ENST00000446023 3175 ntAPPRIS P1 TSL 2 BASIC12.97□□□□□ -0.334e-6■■□□□ 11.7
LIN28BQ6ZN17 UQCC1-204ENST00000374384 2201 ntTSL 2 BASIC12.88□□□□□ -0.354e-6■■□□□ 11.7
LIN28BQ6ZN17 UQCC1-206ENST00000374394 2329 ntTSL 212.54□□□□□ -0.44e-6■■□□□ 11.7
LIN28BQ6ZN17 KLC4-201ENST00000259708 2688 ntAPPRIS P4 TSL 2 BASIC12.49□□□□□ -0.411e-6■■□□□ 11.7
LIN28BQ6ZN17 KLC4-213ENST00000472172 753 ntTSL 212.47□□□□□ -0.411e-6■■□□□ 11.7
LIN28BQ6ZN17 KLC4-216ENST00000479632 528 ntTSL 412.47□□□□□ -0.411e-6■■□□□ 11.7
LIN28BQ6ZN17 UQCC1-202ENST00000359226 2036 ntTSL 4 BASIC12.06□□□□□ -0.484e-6■■□□□ 11.7
LIN28BQ6ZN17 UQCC1-201ENST00000349714 2188 ntTSL 5 BASIC12.02□□□□□ -0.494e-6■■□□□ 11.7
LIN28BQ6ZN17 KLC4-215ENST00000479388 2602 ntAPPRIS ALT2 TSL 1 (best) BASIC11.69□□□□□ -0.541e-6■■□□□ 11.7
LIN28BQ6ZN17 UQCC1-203ENST00000374380 2133 ntTSL 2 BASIC11.51□□□□□ -0.574e-6■■□□□ 11.7
LIN28BQ6ZN17 UQCC1-212ENST00000443429 692 ntTSL 511.51□□□□□ -0.574e-6■■□□□ 11.7
LIN28BQ6ZN17 FST-203ENST00000491717 640 ntTSL 211.45□□□□□ -0.581e-11■■□□□ 11.7
LIN28BQ6ZN17 UQCC1-220ENST00000495752 410 ntTSL 511.27□□□□□ -0.614e-6■■□□□ 11.7
LIN28BQ6ZN17 CTNNB1-211ENST00000465552 878 ntTSL 211.14□□□□□ -0.632e-7■■□□□ 11.7
LIN28BQ6ZN17 ETFB-202ENST00000354232 3551 ntTSL 1 (best) BASIC10.39□□□□□ -0.754e-6■■□□□ 11.7
LIN28BQ6ZN17 UQCC1-205ENST00000374385 2447 ntAPPRIS P1 TSL 1 (best) BASIC10.33□□□□□ -0.764e-6■■□□□ 11.7
LIN28BQ6ZN17 UQCC1-218ENST00000491040 1017 ntTSL 1 (best)10.29□□□□□ -0.764e-6■■□□□ 11.7
LIN28BQ6ZN17 PDXDC1-210ENST00000563679 2963 ntTSL 2 BASIC9.81□□□□□ -0.844e-6■■□□□ 11.7
LIN28BQ6ZN17 UQCC1-207ENST00000397553 566 ntTSL 59.75□□□□□ -0.854e-6■■□□□ 11.7
LIN28BQ6ZN17 KLC4-209ENST00000467906 3604 ntTSL 29.22□□□□□ -0.931e-6■■□□□ 11.7
LIN28BQ6ZN17 UQCC1-211ENST00000438533 736 ntTSL 39.03□□□□□ -0.964e-6■■□□□ 11.7
Retrieved 100 of 21,972 protein–RNA pairs in 407.5 ms