RNA–Protein interactions for RNA: ENST00000640306.1

HNRNPU-228, Transcript of heterogeneous nuclear ribonucleoprotein U, humanhuman

TSL 5

Gene HNRNPU, Length 2,917 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HNRNPU-228ENST00000640306 NISCHQ9Y2I1 1504 aa33.61■■■□□ 2.97
HNRNPU-228ENST00000640306 SHROOM4Q9ULL8 1493 aa29.2■■■□□ 2.27
HNRNPU-228ENST00000640306 CCDC180Q9P1Z9 1646 aa28.97■■■□□ 2.23
HNRNPU-228ENST00000640306 SUPT5HO00267 1087 aaKnown RBP28.74■■■□□ 2.19
HNRNPU-228ENST00000640306 DCAF8L2P0C7V8 631 aa28.27■■■□□ 2.12
HNRNPU-228ENST00000640306 ZCCHC6Q5VYS8 1495 aaKnown RBP28.24■■■□□ 2.11
HNRNPU-228ENST00000640306 CHIC1Q5VXU3 224 aa27.82■■■□□ 2.04
HNRNPU-228ENST00000640306 MYO15BQ96JP2 1530 aa27.79■■■□□ 2.04
HNRNPU-228ENST00000640306 ABCC9O60706 1549 aa27.75■■■□□ 2.03
HNRNPU-228ENST00000640306 DCAF1Q9Y4B6 1507 aa27.54■■■□□ 2
HNRNPU-228ENST00000640306 PCGF6Q9BYE7 350 aa27.4■■□□□ 1.98
HNRNPU-228ENST00000640306 HRCP23327 699 aa27.35■■□□□ 1.97
HNRNPU-228ENST00000640306 LOC105371045A0A1W2PR82 267 aa27.23■■□□□ 1.95
HNRNPU-228ENST00000640306 SCRIBQ14160 1630 aa27.07■■□□□ 1.92
HNRNPU-228ENST00000640306 PPARGC1BQ86YN6 1023 aaKnown RBP27.05■■□□□ 1.92
HNRNPU-228ENST00000640306 NACADO15069 1562 aa27.03■■□□□ 1.92
HNRNPU-228ENST00000640306 RB1CC1Q8TDY2 1594 aa26.81■■□□□ 1.88
HNRNPU-228ENST00000640306 FAM9AQ8IZU1 332 aaPredicted RBP26.65■■□□□ 1.86
HNRNPU-228ENST00000640306 EHMT2Q96KQ7 1210 aa26.63■■□□□ 1.85
HNRNPU-228ENST00000640306 RSF1Q96T23 1441 aaPredicted RBP26.62■■□□□ 1.85
HNRNPU-228ENST00000640306 TRIM26Q12899 539 aaPredicted RBP26.58■■□□□ 1.85
HNRNPU-228ENST00000640306 TRIM41Q8WV44 630 aa26.58■■□□□ 1.85
HNRNPU-228ENST00000640306 PABPN1Q86U42 306 aaKnown RBP eCLIP26.36■■□□□ 1.81
HNRNPU-228ENST00000640306 UNC13AQ9UPW8 1703 aa26.34■■□□□ 1.81
HNRNPU-228ENST00000640306 CECR2Q9BXF3 1484 aa26.32■■□□□ 1.8
HNRNPU-228ENST00000640306 MROH2BQ7Z745 1585 aa26.11■■□□□ 1.77
HNRNPU-228ENST00000640306 BICRAQ9NZM4 1560 aa26.11■■□□□ 1.77
HNRNPU-228ENST00000640306 ZEB1P37275 1124 aaPredicted RBP25.97■■□□□ 1.75
HNRNPU-228ENST00000640306 WIZO95785 1651 aa25.96■■□□□ 1.75
HNRNPU-228ENST00000640306 BAZ1AQ9NRL2 1556 aaPredicted RBP25.88■■□□□ 1.73
HNRNPU-228ENST00000640306 SMARCA4P51532 1647 aa25.78■■□□□ 1.72
HNRNPU-228ENST00000640306 TTBK1Q5TCY1 1321 aaPredicted RBP25.78■■□□□ 1.72
HNRNPU-228ENST00000640306 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP25.73■■□□□ 1.71
HNRNPU-228ENST00000640306 CCER1Q8TC90 406 aaPredicted RBP25.6■■□□□ 1.69
HNRNPU-228ENST00000640306 ABCC8Q09428 1581 aa25.58■■□□□ 1.69
HNRNPU-228ENST00000640306 CCDC88BA6NC98 1476 aa25.52■■□□□ 1.68
HNRNPU-228ENST00000640306 EIF4G1Q04637 1599 aaKnown RBP25.49■■□□□ 1.67
HNRNPU-228ENST00000640306 TOP2AP11388 1531 aaKnown RBP25.47■■□□□ 1.67
HNRNPU-228ENST00000640306 SCAF1Q9H7N4 1312 aaKnown RBP25.46■■□□□ 1.67
HNRNPU-228ENST00000640306 SOGA1O94964 1423 aa25.41■■□□□ 1.66
HNRNPU-228ENST00000640306 ATAD2BQ9ULI0 1458 aa25.38■■□□□ 1.65
HNRNPU-228ENST00000640306 UBTFP17480 764 aaKnown RBP25.37■■□□□ 1.65
HNRNPU-228ENST00000640306 CEP162Q5TB80 1403 aa25.33■■□□□ 1.65
HNRNPU-228ENST00000640306 SMARCA2P51531 1590 aa25.32■■□□□ 1.64
HNRNPU-228ENST00000640306 PEG3Q9GZU2 1588 aa25.31■■□□□ 1.64
HNRNPU-228ENST00000640306 RUSC2Q8N2Y8 1516 aa25.3■■□□□ 1.64
HNRNPU-228ENST00000640306 BAZ1BQ9UIG0 1483 aaKnown RBP25.26■■□□□ 1.63
HNRNPU-228ENST00000640306 CSRNP3Q8WYN3 585 aa25.26■■□□□ 1.63
HNRNPU-228ENST00000640306 TNIKQ9UKE5 1360 aa25.17■■□□□ 1.62
HNRNPU-228ENST00000640306 DIEXFQ68CQ4 756 aaKnown RBP25.16■■□□□ 1.62
HNRNPU-228ENST00000640306 WRNQ14191 1432 aaPredicted RBP eCLIP25.16■■□□□ 1.62
HNRNPU-228ENST00000640306 NEUROD1Q13562 356 aa25.11■■□□□ 1.61
HNRNPU-228ENST00000640306 RANGAP1P46060 587 aaPredicted RBP25.09■■□□□ 1.61
HNRNPU-228ENST00000640306 ACIN1Q9UKV3 1341 aaKnown RBP25.05■■□□□ 1.6
HNRNPU-228ENST00000640306 NCAPD3P42695 1498 aa25.03■■□□□ 1.6
HNRNPU-228ENST00000640306 HNRNPUL2Q1KMD3 747 aaKnown RBP25.02■■□□□ 1.6
HNRNPU-228ENST00000640306 EEA1Q15075 1411 aa24.99■■□□□ 1.59
HNRNPU-228ENST00000640306 GOLGA3Q08378 1498 aa24.99■■□□□ 1.59
HNRNPU-228ENST00000640306 CC2D2AQ9P2K1 1620 aa24.94■■□□□ 1.58
HNRNPU-228ENST00000640306 HMGXB3Q12766 1538 aa24.93■■□□□ 1.58
HNRNPU-228ENST00000640306 GTF3C3Q9Y5Q9 886 aa24.9■■□□□ 1.58
HNRNPU-228ENST00000640306 PELP1Q8IZL8 1130 aaKnown RBP24.88■■□□□ 1.57
HNRNPU-228ENST00000640306 SYNJ1O43426 1573 aa24.86■■□□□ 1.57
HNRNPU-228ENST00000640306 CENPBP07199 599 aaPredicted RBP24.85■■□□□ 1.57
HNRNPU-228ENST00000640306 ZNF316A6NFI3 1004 aaPredicted RBP24.84■■□□□ 1.57
HNRNPU-228ENST00000640306 YTHDC1Q96MU7 727 aaKnown RBP24.84■■□□□ 1.57
HNRNPU-228ENST00000640306 CLIP1P30622 1438 aa24.82■■□□□ 1.56
HNRNPU-228ENST00000640306 CEP164Q9UPV0 1460 aa24.8■■□□□ 1.56
HNRNPU-228ENST00000640306 APLP2Q06481 763 aa24.78■■□□□ 1.56
HNRNPU-228ENST00000640306 RAPGEF2Q9Y4G8 1499 aa24.73■■□□□ 1.55
HNRNPU-228ENST00000640306 DNAJC5BQ9UF47 199 aa24.68■■□□□ 1.54
HNRNPU-228ENST00000640306 VPS8Q8N3P4 1428 aa24.65■■□□□ 1.54
HNRNPU-228ENST00000640306 KIF21BO75037 1637 aa24.64■■□□□ 1.54
HNRNPU-228ENST00000640306 MIER1Q8N108 512 aa24.64■■□□□ 1.54
HNRNPU-228ENST00000640306 CFTRP13569 1480 aa24.57■■□□□ 1.52
HNRNPU-228ENST00000640306 CADPSQ9ULU8 1353 aa24.51■■□□□ 1.51
HNRNPU-228ENST00000640306 KANK4Q5T7N3 995 aaPredicted RBP24.45■■□□□ 1.51
HNRNPU-228ENST00000640306 NESP48681 1621 aa24.43■■□□□ 1.5
HNRNPU-228ENST00000640306 TOP2BQ02880 1626 aa24.4■■□□□ 1.5
HNRNPU-228ENST00000640306 CUX1P39880 1505 aa24.36■■□□□ 1.49
HNRNPU-228ENST00000640306 ITGAEP38570 1179 aa24.36■■□□□ 1.49
HNRNPU-228ENST00000640306 ARAP1Q96P48 1450 aa24.32■■□□□ 1.48
HNRNPU-228ENST00000640306 PRXQ9BXM0 1461 aa24.29■■□□□ 1.48
HNRNPU-228ENST00000640306 DHX57Q6P158 1386 aaKnown RBP24.28■■□□□ 1.48
HNRNPU-228ENST00000640306 FANCD2Q9BXW9 1451 aa24.27■■□□□ 1.48
HNRNPU-228ENST00000640306 BIVM-ERCC5R4GMW8 1640 aa24.25■■□□□ 1.47
HNRNPU-228ENST00000640306 PRDM2Q13029 1718 aa24.23■■□□□ 1.47
HNRNPU-228ENST00000640306 ERICH3Q5RHP9 1530 aa24.2■■□□□ 1.46
HNRNPU-228ENST00000640306 KIF27Q86VH2 1401 aa24.19■■□□□ 1.46
HNRNPU-228ENST00000640306 LAMC3Q9Y6N6 1575 aa24.1■■□□□ 1.45
HNRNPU-228ENST00000640306 CLSPNQ9HAW4 1339 aa24.09■■□□□ 1.45
HNRNPU-228ENST00000640306 FGD5Q6ZNL6 1462 aa24.09■■□□□ 1.45
HNRNPU-228ENST00000640306 ARHGAP35Q9NRY4 1499 aa24.08■■□□□ 1.45
HNRNPU-228ENST00000640306 CCNB3Q8WWL7 1395 aa24.08■■□□□ 1.45
HNRNPU-228ENST00000640306 RRBP1Q9P2E9 1410 aaKnown RBP24.05■■□□□ 1.44
HNRNPU-228ENST00000640306 ATP1B4Q9UN42 357 aaPredicted RBP24.04■■□□□ 1.44
HNRNPU-228ENST00000640306 P3H3Q8IVL6 736 aa24.03■■□□□ 1.44
HNRNPU-228ENST00000640306 CUX2O14529 1486 aa24.01■■□□□ 1.43
HNRNPU-228ENST00000640306 PDS5BQ9NTI5 1447 aa24.01■■□□□ 1.43
HNRNPU-228ENST00000640306 TOPBP1Q92547 1522 aa24■■□□□ 1.43
Retrieved 100 of 20,778 RNA–protein pairs in 37.6 ms