RNA–Protein interactions for RNA: ENST00000435747.2

CPNE1-214, Transcript of copine 1, humanhuman

TSL 3

Gene CPNE1, Length 400 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE1-214ENST00000435747 NISCHQ9Y2I1 1504 aa26.89■■□□□ 1.89
CPNE1-214ENST00000435747 ABCC9O60706 1549 aa25.41■■□□□ 1.66
CPNE1-214ENST00000435747 DNAJC5BQ9UF47 199 aa24.59■■□□□ 1.53
CPNE1-214ENST00000435747 CCDC180Q9P1Z9 1646 aa24.54■■□□□ 1.52
CPNE1-214ENST00000435747 RB1CC1Q8TDY2 1594 aa23.8■■□□□ 1.4
CPNE1-214ENST00000435747 PABPN1Q86U42 306 aaKnown RBP eCLIP23.51■■□□□ 1.35
CPNE1-214ENST00000435747 NACADO15069 1562 aa23.4■■□□□ 1.34
CPNE1-214ENST00000435747 UNC13AQ9UPW8 1703 aa23.28■■□□□ 1.32
CPNE1-214ENST00000435747 DNAJC5Q9H3Z4 198 aa23.26■■□□□ 1.31
CPNE1-214ENST00000435747 DCAF8L2P0C7V8 631 aa23.13■■□□□ 1.29
CPNE1-214ENST00000435747 BICRAQ9NZM4 1560 aa23.1■■□□□ 1.29
CPNE1-214ENST00000435747 CECR2Q9BXF3 1484 aa22.98■■□□□ 1.27
CPNE1-214ENST00000435747 CC2D2AQ9P2K1 1620 aa22.91■■□□□ 1.26
CPNE1-214ENST00000435747 MYO15BQ96JP2 1530 aa22.76■■□□□ 1.23
CPNE1-214ENST00000435747 SHROOM4Q9ULL8 1493 aa22.72■■□□□ 1.23
CPNE1-214ENST00000435747 EIF4G1Q04637 1599 aaKnown RBP22.63■■□□□ 1.21
CPNE1-214ENST00000435747 SCRIBQ14160 1630 aa22.31■■□□□ 1.16
CPNE1-214ENST00000435747 CUX2O14529 1486 aa22.27■■□□□ 1.16
CPNE1-214ENST00000435747 DCAF1Q9Y4B6 1507 aa22.15■■□□□ 1.14
CPNE1-214ENST00000435747 ZCCHC6Q5VYS8 1495 aaKnown RBP22.09■■□□□ 1.13
CPNE1-214ENST00000435747 ERCC6Q03468 1493 aa22.03■■□□□ 1.12
CPNE1-214ENST00000435747 TRIM41Q8WV44 630 aa21.91■■□□□ 1.1
CPNE1-214ENST00000435747 NCAPD3P42695 1498 aa21.6■■□□□ 1.05
CPNE1-214ENST00000435747 NESP48681 1621 aa21.56■■□□□ 1.04
CPNE1-214ENST00000435747 THOC2Q8NI27 1593 aaKnown RBP21.53■■□□□ 1.04
CPNE1-214ENST00000435747 ATAD2BQ9ULI0 1458 aa21.41■■□□□ 1.02
CPNE1-214ENST00000435747 HMGXB3Q12766 1538 aa21.37■■□□□ 1.01
CPNE1-214ENST00000435747 SMARCA2P51531 1590 aa21.36■■□□□ 1.01
CPNE1-214ENST00000435747 KIF21AQ7Z4S6 1674 aa21.28■■□□□ 1
CPNE1-214ENST00000435747 LAMC3Q9Y6N6 1575 aa21.28■■□□□ 1
CPNE1-214ENST00000435747 PDS5BQ9NTI5 1447 aa21.2■□□□□ 0.98
CPNE1-214ENST00000435747 SMARCA4P51532 1647 aa21.18■□□□□ 0.98
CPNE1-214ENST00000435747 BAZ1BQ9UIG0 1483 aaKnown RBP21.18■□□□□ 0.98
CPNE1-214ENST00000435747 BAZ1AQ9NRL2 1556 aaPredicted RBP21.17■□□□□ 0.98
CPNE1-214ENST00000435747 OSCARQ8IYS5 282 aa21.1■□□□□ 0.97
CPNE1-214ENST00000435747 MRC2Q9UBG0 1479 aa21.07■□□□□ 0.96
CPNE1-214ENST00000435747 WDR62O43379 1518 aa21.03■□□□□ 0.96
CPNE1-214ENST00000435747 PEG3Q9GZU2 1588 aa20.96■□□□□ 0.95
CPNE1-214ENST00000435747 RIMBP3CA6NJZ7 1639 aa20.94■□□□□ 0.94
CPNE1-214ENST00000435747 RIMBP3BA6NNM3 1639 aa20.94■□□□□ 0.94
CPNE1-214ENST00000435747 RIMBP3Q9UFD9 1639 aa20.94■□□□□ 0.94
CPNE1-214ENST00000435747 CADPSQ9ULU8 1353 aa20.91■□□□□ 0.94
CPNE1-214ENST00000435747 AEBP2Q6ZN18 517 aaPredicted RBP20.85■□□□□ 0.93
CPNE1-214ENST00000435747 CEP164Q9UPV0 1460 aa20.81■□□□□ 0.92
CPNE1-214ENST00000435747 TRHP20396 242 aaPredicted RBP20.77■□□□□ 0.92
CPNE1-214ENST00000435747 ARHGEF11O15085 1522 aa20.77■□□□□ 0.92
CPNE1-214ENST00000435747 MROH2BQ7Z745 1585 aa20.7■□□□□ 0.9
CPNE1-214ENST00000435747 FANCD2Q9BXW9 1451 aa20.69■□□□□ 0.9
CPNE1-214ENST00000435747 CYB5RLQ6IPT4 315 aa20.68■□□□□ 0.9
CPNE1-214ENST00000435747 URB2Q14146 1524 aaKnown RBP20.56■□□□□ 0.88
CPNE1-214ENST00000435747 ARAP1Q96P48 1450 aa20.5■□□□□ 0.87
CPNE1-214ENST00000435747 CFTRP13569 1480 aa20.48■□□□□ 0.87
CPNE1-214ENST00000435747 ZNF608Q9ULD9 1512 aaPredicted RBP20.46■□□□□ 0.87
CPNE1-214ENST00000435747 WIZO95785 1651 aa20.43■□□□□ 0.86
CPNE1-214ENST00000435747 IFT140Q96RY7 1462 aa20.42■□□□□ 0.86
CPNE1-214ENST00000435747 CHD1O14646 1710 aa20.36■□□□□ 0.85
CPNE1-214ENST00000435747 RSF1Q96T23 1441 aaPredicted RBP20.35■□□□□ 0.85
CPNE1-214ENST00000435747 EIF4G3O43432 1585 aaKnown RBP20.32■□□□□ 0.84
CPNE1-214ENST00000435747 PRDM2Q13029 1718 aa20.26■□□□□ 0.83
CPNE1-214ENST00000435747 FBLN2P98095 1184 aa20.25■□□□□ 0.83
CPNE1-214ENST00000435747 TOPBP1Q92547 1522 aa20.19■□□□□ 0.82
CPNE1-214ENST00000435747 AQRO60306 1485 aaKnown RBP eCLIP20.17■□□□□ 0.828e-7■■■■□ 24.2
CPNE1-214ENST00000435747 TOP2AP11388 1531 aaKnown RBP20.11■□□□□ 0.81
CPNE1-214ENST00000435747 ABCC8Q09428 1581 aa20.1■□□□□ 0.81
CPNE1-214ENST00000435747 TARBP1Q13395 1621 aaKnown RBP20.07■□□□□ 0.8
CPNE1-214ENST00000435747 CLASP1Q7Z460 1538 aa20.07■□□□□ 0.8
CPNE1-214ENST00000435747 DNMBPQ6XZF7 1577 aa20.04■□□□□ 0.8
CPNE1-214ENST00000435747 ILDR1Q86SU0 546 aaPredicted RBP20.04■□□□□ 0.8
CPNE1-214ENST00000435747 SYNJ1O43426 1573 aa20.01■□□□□ 0.79
CPNE1-214ENST00000435747 SNAPC4Q5SXM2 1469 aa19.95■□□□□ 0.78
CPNE1-214ENST00000435747 GAPVD1Q14C86 1478 aa19.94■□□□□ 0.78
CPNE1-214ENST00000435747 CHMP7Q8WUX9 453 aaPredicted RBP19.94■□□□□ 0.78
CPNE1-214ENST00000435747 POLA1P09884 1462 aaPredicted RBP19.92■□□□□ 0.78
CPNE1-214ENST00000435747 TDRD9Q8NDG6 1382 aaKnown RBP19.9■□□□□ 0.78
CPNE1-214ENST00000435747 CCDC88BA6NC98 1476 aa19.88■□□□□ 0.77
CPNE1-214ENST00000435747 RAD54L2Q9Y4B4 1467 aa19.87■□□□□ 0.77
CPNE1-214ENST00000435747 MAGI1Q96QZ7 1491 aaPredicted RBP19.86■□□□□ 0.77
CPNE1-214ENST00000435747 SOGA1O94964 1423 aa19.83■□□□□ 0.76
CPNE1-214ENST00000435747 WDR97A6NE52 1622 aa19.83■□□□□ 0.76
CPNE1-214ENST00000435747 SYNJ2O15056 1496 aa19.79■□□□□ 0.76
CPNE1-214ENST00000435747 KIF13AQ9H1H9 1805 aa19.76■□□□□ 0.75
CPNE1-214ENST00000435747 GRIN2BQ13224 1484 aa19.76■□□□□ 0.75
CPNE1-214ENST00000435747 KDM4FA0A1W2PPD8 638 aa19.7■□□□□ 0.74
CPNE1-214ENST00000435747 ERCC6L2Q5T890 1561 aa19.69■□□□□ 0.74
CPNE1-214ENST00000435747 FGD5Q6ZNL6 1462 aa19.68■□□□□ 0.74
CPNE1-214ENST00000435747 PBRM1Q86U86 1689 aa19.65■□□□□ 0.74
CPNE1-214ENST00000435747 CEP170Q5SW79 1584 aa19.57■□□□□ 0.72
CPNE1-214ENST00000435747 FAM69CQ0P6D2 419 aa19.55■□□□□ 0.72
CPNE1-214ENST00000435747 KDM6BO15054 1643 aa19.54■□□□□ 0.72
CPNE1-214ENST00000435747 ABCC10Q5T3U5 1492 aa19.51■□□□□ 0.71
CPNE1-214ENST00000435747 CUX1P39880 1505 aa19.51■□□□□ 0.71
CPNE1-214ENST00000435747 GRIN2AQ12879 1464 aa19.5■□□□□ 0.71
CPNE1-214ENST00000435747 SHROOM2Q13796 1616 aa19.48■□□□□ 0.71
CPNE1-214ENST00000435747 NUP160Q12769 1436 aa19.46■□□□□ 0.71
CPNE1-214ENST00000435747 ABCA5Q8WWZ7 1642 aa19.46■□□□□ 0.71
CPNE1-214ENST00000435747 DIP2BQ9P265 1576 aa19.44■□□□□ 0.7
CPNE1-214ENST00000435747 TSPOAP1O95153 1857 aa19.42■□□□□ 0.7
CPNE1-214ENST00000435747 NPM1P06748 294 aaKnown RBP eCLIP19.42■□□□□ 0.7
CPNE1-214ENST00000435747 MAPKBP1O60336 1514 aa19.41■□□□□ 0.7
CPNE1-214ENST00000435747 ABCA10Q8WWZ4 1543 aa19.4■□□□□ 0.7
Retrieved 100 of 20,778 RNA–protein pairs in 16.3 ms