RNA–Protein interactions for RNA: ENST00000507485.1

RPS3A-206, Transcript of ribosomal protein S3A, humanhuman

TSL 1 (best)

Gene RPS3A, Length 1,526 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RPS3A-206ENST00000507485 AEBP2Q6ZN18 517 aaPredicted RBP29.29■■■□□ 2.28
RPS3A-206ENST00000507485 CHIC1Q5VXU3 224 aa27.52■■■□□ 2
RPS3A-206ENST00000507485 SENP3Q9H4L4 574 aaPredicted RBP25.17■■□□□ 1.62
RPS3A-206ENST00000507485 PHF23Q9BUL5 403 aaPredicted RBP24.73■■□□□ 1.55
RPS3A-206ENST00000507485 FOXD1Q16676 465 aa23.43■■□□□ 1.34
RPS3A-206ENST00000507485 NISCHQ9Y2I1 1504 aa22.84■■□□□ 1.25
RPS3A-206ENST00000507485 POTEDQ86YR6 584 aa22.21■■□□□ 1.15
RPS3A-206ENST00000507485 MSH5O43196 834 aa22.16■■□□□ 1.14
RPS3A-206ENST00000507485 PLPPR3Q6T4P5 718 aa21.85■■□□□ 1.09
RPS3A-206ENST00000507485 PIAS4Q8N2W9 510 aaPredicted RBP21.8■■□□□ 1.08
RPS3A-206ENST00000507485 PPP6R1Q9UPN7 881 aa21.56■■□□□ 1.04
RPS3A-206ENST00000507485 ADRA2BP18089 450 aa21.47■■□□□ 1.03
RPS3A-206ENST00000507485 ABCC9O60706 1549 aa20.59■□□□□ 0.89
RPS3A-206ENST00000507485 CCDC180Q9P1Z9 1646 aa20.49■□□□□ 0.87
RPS3A-206ENST00000507485 DMRT2Q9Y5R5 561 aa19.87■□□□□ 0.77
RPS3A-206ENST00000507485 MAPK8IP2Q13387 824 aaPredicted RBP19.82■□□□□ 0.76
RPS3A-206ENST00000507485 SCAF1Q9H7N4 1312 aaKnown RBP19.81■□□□□ 0.76
RPS3A-206ENST00000507485 RB1CC1Q8TDY2 1594 aa19.51■□□□□ 0.71
RPS3A-206ENST00000507485 DNAJC5BQ9UF47 199 aa19.43■□□□□ 0.7
RPS3A-206ENST00000507485 NACADO15069 1562 aa19.36■□□□□ 0.69
RPS3A-206ENST00000507485 DCAF8L2P0C7V8 631 aa19.24■□□□□ 0.67
RPS3A-206ENST00000507485 CACNB1Q02641 598 aaPredicted RBP19.2■□□□□ 0.66
RPS3A-206ENST00000507485 UNC13AQ9UPW8 1703 aa19.17■□□□□ 0.66
RPS3A-206ENST00000507485 PABPN1Q86U42 306 aaKnown RBP eCLIP19.15■□□□□ 0.66
RPS3A-206ENST00000507485 MYO15BQ96JP2 1530 aa19.08■□□□□ 0.64
RPS3A-206ENST00000507485 PPP4R3CPQ6ZMV5 832 aa19.06■□□□□ 0.64
RPS3A-206ENST00000507485 BICRAQ9NZM4 1560 aa19.05■□□□□ 0.64
RPS3A-206ENST00000507485 DCAF8L1A6NGE4 600 aa19.01■□□□□ 0.63
RPS3A-206ENST00000507485 HOXD11P31277 338 aaPredicted RBP19■□□□□ 0.63
RPS3A-206ENST00000507485 ZCCHC6Q5VYS8 1495 aaKnown RBP18.93■□□□□ 0.62
RPS3A-206ENST00000507485 CNKSR2Q8WXI2 1034 aa18.84■□□□□ 0.61
RPS3A-206ENST00000507485 DCAF1Q9Y4B6 1507 aa18.83■□□□□ 0.61
RPS3A-206ENST00000507485 RNF39Q9H2S5 420 aa18.83■□□□□ 0.6
RPS3A-206ENST00000507485 RNF216Q9NWF9 866 aaPredicted RBP18.76■□□□□ 0.59
RPS3A-206ENST00000507485 SCRIBQ14160 1630 aa18.72■□□□□ 0.59
RPS3A-206ENST00000507485 SHROOM4Q9ULL8 1493 aa18.65■□□□□ 0.58
RPS3A-206ENST00000507485 CC2D2AQ9P2K1 1620 aa18.59■□□□□ 0.57
RPS3A-206ENST00000507485 C1QBPQ07021 282 aaKnown RBP18.59■□□□□ 0.57
RPS3A-206ENST00000507485 EIF4G1Q04637 1599 aaKnown RBP18.53■□□□□ 0.56
RPS3A-206ENST00000507485 CECR2Q9BXF3 1484 aa18.52■□□□□ 0.55
RPS3A-206ENST00000507485 NCBP3Q53F19 620 aaKnown RBP18.29■□□□□ 0.52
RPS3A-206ENST00000507485 GRWD1Q9BQ67 446 aaKnown RBP eCLIP18.08■□□□□ 0.495e-8■■□□□ 14.3
RPS3A-206ENST00000507485 NPM3O75607 178 aaKnown RBP17.93■□□□□ 0.46
RPS3A-206ENST00000507485 NCAPD3P42695 1498 aa17.9■□□□□ 0.46
RPS3A-206ENST00000507485 ATAD2BQ9ULI0 1458 aa17.86■□□□□ 0.45
RPS3A-206ENST00000507485 SMARCA4P51532 1647 aa17.84■□□□□ 0.45
RPS3A-206ENST00000507485 DNAJC5Q9H3Z4 198 aa17.77■□□□□ 0.44
RPS3A-206ENST00000507485 HMGXB3Q12766 1538 aa17.76■□□□□ 0.43
RPS3A-206ENST00000507485 SMARCA2P51531 1590 aa17.75■□□□□ 0.43
RPS3A-206ENST00000507485 NESP48681 1621 aa17.71■□□□□ 0.43
RPS3A-206ENST00000507485 CUX2O14529 1486 aa17.7■□□□□ 0.42
RPS3A-206ENST00000507485 ERCC6Q03468 1493 aa17.7■□□□□ 0.42
RPS3A-206ENST00000507485 BAZ1AQ9NRL2 1556 aaPredicted RBP17.7■□□□□ 0.42
RPS3A-206ENST00000507485 PEG3Q9GZU2 1588 aa17.65■□□□□ 0.42
RPS3A-206ENST00000507485 BAZ1BQ9UIG0 1483 aaKnown RBP17.65■□□□□ 0.42
RPS3A-206ENST00000507485 MROH2BQ7Z745 1585 aa17.64■□□□□ 0.42
RPS3A-206ENST00000507485 U3KPZ7 1027 aaPredicted RBP17.62■□□□□ 0.41
RPS3A-206ENST00000507485 THOC2Q8NI27 1593 aaKnown RBP17.52■□□□□ 0.4
RPS3A-206ENST00000507485 DSG3P32926 999 aa17.49■□□□□ 0.39
RPS3A-206ENST00000507485 CAPN15O75808 1086 aa17.48■□□□□ 0.39
RPS3A-206ENST00000507485 LAMC3Q9Y6N6 1575 aa17.48■□□□□ 0.39
RPS3A-206ENST00000507485 SPINK5Q9NQ38 1064 aaPredicted RBP17.46■□□□□ 0.39
RPS3A-206ENST00000507485 KIF21AQ7Z4S6 1674 aa17.46■□□□□ 0.39
RPS3A-206ENST00000507485 WIZO95785 1651 aa17.42■□□□□ 0.38
RPS3A-206ENST00000507485 PDS5BQ9NTI5 1447 aa17.35■□□□□ 0.37
RPS3A-206ENST00000507485 CADPSQ9ULU8 1353 aa17.34■□□□□ 0.37
RPS3A-206ENST00000507485 POTEHQ6S545 545 aa17.34■□□□□ 0.37
RPS3A-206ENST00000507485 KCNA4P22459 653 aa17.29■□□□□ 0.36
RPS3A-206ENST00000507485 MRC2Q9UBG0 1479 aa17.25■□□□□ 0.35
RPS3A-206ENST00000507485 APLP2Q06481 763 aa17.25■□□□□ 0.35
RPS3A-206ENST00000507485 RSF1Q96T23 1441 aaPredicted RBP17.24■□□□□ 0.35
RPS3A-206ENST00000507485 WDR62O43379 1518 aa17.23■□□□□ 0.35
RPS3A-206ENST00000507485 SLC4A2P04920 1241 aa17.21■□□□□ 0.34
RPS3A-206ENST00000507485 TOP2AP11388 1531 aaKnown RBP17.16■□□□□ 0.34
RPS3A-206ENST00000507485 CFTRP13569 1480 aa17.16■□□□□ 0.34
RPS3A-206ENST00000507485 FANCD2Q9BXW9 1451 aa17.16■□□□□ 0.34
RPS3A-206ENST00000507485 CEP164Q9UPV0 1460 aa17.16■□□□□ 0.34
RPS3A-206ENST00000507485 ZNF219Q9P2Y4 722 aaPredicted RBP17.13■□□□□ 0.33
RPS3A-206ENST00000507485 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.11■□□□□ 0.33
RPS3A-206ENST00000507485 HNRNPUL2Q1KMD3 747 aaKnown RBP17.11■□□□□ 0.33
RPS3A-206ENST00000507485 TRHP20396 242 aaPredicted RBP17.09■□□□□ 0.33
RPS3A-206ENST00000507485 URB2Q14146 1524 aaKnown RBP17.08■□□□□ 0.32
RPS3A-206ENST00000507485 ABCB7O75027 752 aa16.99■□□□□ 0.31
RPS3A-206ENST00000507485 CCDC88BA6NC98 1476 aa16.98■□□□□ 0.31
RPS3A-206ENST00000507485 PRDM2Q13029 1718 aa16.97■□□□□ 0.31
RPS3A-206ENST00000507485 SAMD1Q6SPF0 538 aaPredicted RBP16.96■□□□□ 0.31
RPS3A-206ENST00000507485 TRIM41Q8WV44 630 aa16.96■□□□□ 0.31
RPS3A-206ENST00000507485 ZNF608Q9ULD9 1512 aaPredicted RBP16.88■□□□□ 0.29
RPS3A-206ENST00000507485 OSCARQ8IYS5 282 aa16.86■□□□□ 0.29
RPS3A-206ENST00000507485 TOPBP1Q92547 1522 aa16.85■□□□□ 0.29
RPS3A-206ENST00000507485 IFT140Q96RY7 1462 aa16.82■□□□□ 0.28
RPS3A-206ENST00000507485 RBM42Q9BTD8 480 aaKnown RBP16.79■□□□□ 0.28
RPS3A-206ENST00000507485 DNMBPQ6XZF7 1577 aa16.76■□□□□ 0.27
RPS3A-206ENST00000507485 EIF4G3O43432 1585 aaKnown RBP16.76■□□□□ 0.27
RPS3A-206ENST00000507485 RIMBP3CA6NJZ7 1639 aa16.73■□□□□ 0.27
RPS3A-206ENST00000507485 RIMBP3BA6NNM3 1639 aa16.73■□□□□ 0.27
RPS3A-206ENST00000507485 RIMBP3Q9UFD9 1639 aa16.73■□□□□ 0.27
RPS3A-206ENST00000507485 TARBP1Q13395 1621 aaKnown RBP16.73■□□□□ 0.27
RPS3A-206ENST00000507485 ABCC8Q09428 1581 aa16.71■□□□□ 0.27
RPS3A-206ENST00000507485 AQRO60306 1485 aaKnown RBP eCLIP16.69■□□□□ 0.265e-10■■■■■ 32.4
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms