Protein–RNA interactions for Protein: Q9Y6R9

CCDC61, Coiled-coil domain-containing protein 61, humanhuman

Predictions only

Length 512 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC61Q9Y6R9 KLHL26-202ENST00000595182 522 ntTSL 4 BASIC32.97■■■□□ 2.87
CCDC61Q9Y6R9 EMID1-203ENST00000404820 2118 ntTSL 5 BASIC32.96■■■□□ 2.87
CCDC61Q9Y6R9 CASP9-202ENST00000348549 1621 ntTSL 1 (best) BASIC32.96■■■□□ 2.87
CCDC61Q9Y6R9 SNAI3-AS1-204ENST00000567997 2048 ntBASIC32.96■■■□□ 2.87
CCDC61Q9Y6R9 RAB20-201ENST00000267328 1518 ntAPPRIS P1 TSL 1 (best) BASIC32.96■■■□□ 2.87
CCDC61Q9Y6R9 BSCL2-205ENST00000403550 1693 ntAPPRIS P3 TSL 5 BASIC32.95■■■□□ 2.87
CCDC61Q9Y6R9 IGFBP7-203ENST00000514062 1251 ntAPPRIS ALT2 TSL 2 BASIC32.95■■■□□ 2.87
CCDC61Q9Y6R9 PQLC1-203ENST00000397778 2555 ntAPPRIS P3 TSL 1 (best) BASIC32.94■■■□□ 2.86
CCDC61Q9Y6R9 CIRBP-216ENST00000588090 1459 ntAPPRIS P3 TSL 3 BASIC32.93■■■□□ 2.86
CCDC61Q9Y6R9 RHEB-201ENST00000262187 2075 ntAPPRIS P1 TSL 1 (best) BASIC32.92■■■□□ 2.86
CCDC61Q9Y6R9 C11orf80-210ENST00000527634 1666 ntAPPRIS ALT2 TSL 5 BASIC32.92■■■□□ 2.86
CCDC61Q9Y6R9 CDKN2A-207ENST00000497750 565 ntTSL 4 BASIC32.92■■■□□ 2.86
CCDC61Q9Y6R9 CDKN2A-212ENST00000578845 678 ntTSL 2 BASIC32.92■■■□□ 2.86
CCDC61Q9Y6R9 AC011551.1-201ENST00000614101 683 ntBASIC32.92■■■□□ 2.86
CCDC61Q9Y6R9 HM13-AS1-201ENST00000412178 489 ntTSL 3 BASIC32.91■■■□□ 2.86
CCDC61Q9Y6R9 CDKN3-207ENST00000543789 610 ntTSL 5 BASIC32.91■■■□□ 2.86
CCDC61Q9Y6R9 NAA30-203ENST00000555166 1294 ntAPPRIS ALT2 TSL 2 BASIC32.91■■■□□ 2.86
CCDC61Q9Y6R9 MIR663AHG-233ENST00000609248 830 ntTSL 5 BASIC32.91■■■□□ 2.86
CCDC61Q9Y6R9 ZNF428-201ENST00000300811 1412 ntAPPRIS P1 TSL 1 (best) BASIC32.91■■■□□ 2.86
CCDC61Q9Y6R9 PLEK2-201ENST00000216446 1549 ntAPPRIS P1 TSL 1 (best) BASIC32.91■■■□□ 2.86
CCDC61Q9Y6R9 FSD1-204ENST00000597590 1634 ntTSL 5 BASIC32.91■■■□□ 2.86
CCDC61Q9Y6R9 POLE2-201ENST00000216367 1776 ntAPPRIS P1 TSL 1 (best) BASIC32.9■■■□□ 2.86
CCDC61Q9Y6R9 PWWP2B-201ENST00000305233 2651 ntAPPRIS P1 TSL 1 (best) BASIC32.89■■■□□ 2.86
CCDC61Q9Y6R9 CNNM2-201ENST00000369875 2059 ntTSL 1 (best) BASIC32.89■■■□□ 2.86
CCDC61Q9Y6R9 UNCX-201ENST00000316333 2048 ntAPPRIS P1 TSL 1 (best) BASIC32.89■■■□□ 2.86
CCDC61Q9Y6R9 CLDN15-201ENST00000308344 1370 ntAPPRIS P1 TSL 1 (best) BASIC32.89■■■□□ 2.86
CCDC61Q9Y6R9 MADCAM1-202ENST00000346144 1309 ntAPPRIS ALT2 TSL 1 (best) BASIC32.89■■■□□ 2.86
CCDC61Q9Y6R9 H2AFB1-201ENST00000620016 587 ntAPPRIS P1 BASIC32.89■■■□□ 2.86
CCDC61Q9Y6R9 SLC52A2-208ENST00000527078 1790 ntAPPRIS P1 TSL 5 BASIC32.88■■■□□ 2.85
CCDC61Q9Y6R9 LRMDA-215ENST00000611255 1040 ntAPPRIS ALT2 TSL 5 BASIC32.88■■■□□ 2.85
CCDC61Q9Y6R9 GDF6-202ENST00000620978 973 ntTSL 1 (best) BASIC32.88■■■□□ 2.85
CCDC61Q9Y6R9 ITGA9-203ENST00000422441 2282 ntTSL 1 (best) BASIC32.88■■■□□ 2.85
CCDC61Q9Y6R9 GAK-223ENST00000628912 497 ntTSL 5 BASIC32.87■■■□□ 2.85
CCDC61Q9Y6R9 PABPC1L-202ENST00000217074 1263 ntTSL 5 BASIC32.86■■■□□ 2.85
CCDC61Q9Y6R9 EXOC3L4-201ENST00000380069 2293 ntAPPRIS P1 TSL 1 (best) BASIC32.86■■■□□ 2.85
CCDC61Q9Y6R9 FOSL1-202ENST00000448083 1427 ntTSL 2 BASIC32.85■■■□□ 2.85
CCDC61Q9Y6R9 EFEMP2-201ENST00000307998 2034 ntAPPRIS P1 TSL 1 (best) BASIC32.85■■■□□ 2.85
CCDC61Q9Y6R9 BMP7-204ENST00000450594 1857 ntTSL 2 BASIC32.85■■■□□ 2.85
CCDC61Q9Y6R9 MAST4-206ENST00000406374 1066 ntTSL 1 (best) BASIC32.85■■■□□ 2.85
CCDC61Q9Y6R9 SENP5-202ENST00000419026 973 ntTSL 3 BASIC32.84■■■□□ 2.85
CCDC61Q9Y6R9 LRRC61-205ENST00000493307 1456 ntAPPRIS P1 TSL 5 BASIC32.84■■■□□ 2.85
CCDC61Q9Y6R9 PORCN-202ENST00000355961 1848 ntAPPRIS ALT1 TSL 1 (best) BASIC32.84■■■□□ 2.85
CCDC61Q9Y6R9 AC131281.2-201ENST00000520478 145 ntBASIC32.83■■■□□ 2.85
CCDC61Q9Y6R9 MCRIP1-210ENST00000576431 577 ntTSL 5 BASIC32.83■■■□□ 2.85
CCDC61Q9Y6R9 ZNF74-204ENST00000405993 1839 ntAPPRIS ALT2 TSL 5 BASIC32.83■■■□□ 2.85
CCDC61Q9Y6R9 NKX2-5-202ENST00000424406 1124 ntTSL 1 (best) BASIC32.82■■■□□ 2.84
CCDC61Q9Y6R9 ARPC4-208ENST00000498623 942 ntTSL 2 BASIC32.82■■■□□ 2.84
CCDC61Q9Y6R9 TSPAN17-204ENST00000503045 1019 ntTSL 5 BASIC32.82■■■□□ 2.84
CCDC61Q9Y6R9 SLC16A10-206ENST00000612036 1231 ntTSL 5 BASIC32.82■■■□□ 2.84
CCDC61Q9Y6R9 TMUB1-202ENST00000392818 1563 ntAPPRIS P1 TSL 1 (best) BASIC32.82■■■□□ 2.84
CCDC61Q9Y6R9 C4orf36-201ENST00000295898 881 ntAPPRIS P1 TSL 1 (best) BASIC32.81■■■□□ 2.84
CCDC61Q9Y6R9 LRRC1-201ENST00000370882 808 ntTSL 3 BASIC32.81■■■□□ 2.84
CCDC61Q9Y6R9 WBP1-203ENST00000409737 1110 ntAPPRIS ALT1 TSL 5 BASIC32.81■■■□□ 2.84
CCDC61Q9Y6R9 RPP21-222ENST00000433076 577 ntTSL 2 BASIC32.81■■■□□ 2.84
CCDC61Q9Y6R9 ERGIC1-206ENST00000519860 1000 ntTSL 3 BASIC32.81■■■□□ 2.84
CCDC61Q9Y6R9 TRIR-202ENST00000588213 841 ntTSL 3 BASIC32.81■■■□□ 2.84
CCDC61Q9Y6R9 AC010997.5-201ENST00000609182 354 ntBASIC32.81■■■□□ 2.84
CCDC61Q9Y6R9 LINC01881-206ENST00000614114 957 ntTSL 2 BASIC32.81■■■□□ 2.84
CCDC61Q9Y6R9 GTF2E2-201ENST00000355904 1762 ntAPPRIS P1 TSL 1 (best) BASIC32.81■■■□□ 2.84
CCDC61Q9Y6R9 RBM42-206ENST00000592202 1469 ntTSL 5 BASIC32.8■■■□□ 2.84
CCDC61Q9Y6R9 TOP1MT-208ENST00000519148 1868 ntTSL 2 BASIC32.8■■■□□ 2.84
CCDC61Q9Y6R9 CLTB-201ENST00000310418 1215 ntAPPRIS P4 TSL 1 (best) BASIC32.8■■■□□ 2.84
CCDC61Q9Y6R9 CLTB-202ENST00000345807 1161 ntAPPRIS ALT1 TSL 1 (best) BASIC32.8■■■□□ 2.84
CCDC61Q9Y6R9 PFN2-210ENST00000481767 1620 ntTSL 2 BASIC32.8■■■□□ 2.84
CCDC61Q9Y6R9 IRAK1-205ENST00000429936 2127 ntTSL 5 BASIC32.8■■■□□ 2.84
CCDC61Q9Y6R9 SNRNP70-206ENST00000598441 1574 ntAPPRIS P1 TSL 1 (best) BASIC32.79■■■□□ 2.84
CCDC61Q9Y6R9 C12orf75-207ENST00000552457 689 ntTSL 5 BASIC32.79■■■□□ 2.84
CCDC61Q9Y6R9 HNRNPUL1-222ENST00000617774 451 ntTSL 5 BASIC32.79■■■□□ 2.84
CCDC61Q9Y6R9 PAOX-203ENST00000357296 1633 ntTSL 1 (best) BASIC32.78■■■□□ 2.84
CCDC61Q9Y6R9 SERTAD4-AS1-202ENST00000475406 591 ntTSL 2 BASIC32.78■■■□□ 2.84
CCDC61Q9Y6R9 SSSCA1-AS1-201ENST00000567594 614 ntBASIC32.78■■■□□ 2.84
CCDC61Q9Y6R9 MRGPRF-AS1-203ENST00000569432 542 ntTSL 4 BASIC32.78■■■□□ 2.84
CCDC61Q9Y6R9 SRR-208ENST00000576848 588 ntTSL 4 BASIC32.78■■■□□ 2.84
CCDC61Q9Y6R9 AL117332.1-201ENST00000622628 974 ntBASIC32.78■■■□□ 2.84
CCDC61Q9Y6R9 C19orf47-202ENST00000392035 2126 ntAPPRIS ALT2 TSL 1 (best) BASIC32.78■■■□□ 2.84
CCDC61Q9Y6R9 FAM66E-202ENST00000533615 2087 ntTSL 2 BASIC32.78■■■□□ 2.84
CCDC61Q9Y6R9 AQP1-202ENST00000409611 1140 ntTSL 1 (best) BASIC32.77■■■□□ 2.84
CCDC61Q9Y6R9 TK2-202ENST00000417693 1046 ntTSL 2 BASIC32.77■■■□□ 2.84
CCDC61Q9Y6R9 MIR3621-201ENST00000580529 85 ntBASIC32.77■■■□□ 2.84
CCDC61Q9Y6R9 SLC35A2-209ENST00000452555 1563 ntTSL 2 BASIC32.77■■■□□ 2.84
CCDC61Q9Y6R9 TSPAN4-203ENST00000397397 1423 ntAPPRIS P1 TSL 1 (best) BASIC32.77■■■□□ 2.84
CCDC61Q9Y6R9 MOB4-204ENST00000409360 1447 ntTSL 5 BASIC32.77■■■□□ 2.84
CCDC61Q9Y6R9 NR6A1-203ENST00000416460 1898 ntAPPRIS ALT2 TSL 1 (best) BASIC32.76■■■□□ 2.84
CCDC61Q9Y6R9 HNRNPD-203ENST00000353341 1585 ntAPPRIS ALT1 TSL 1 (best) BASIC32.76■■■□□ 2.84
CCDC61Q9Y6R9 HNRNPAB-208ENST00000515193 1595 ntAPPRIS ALT2 TSL 5 BASIC32.76■■■□□ 2.84
CCDC61Q9Y6R9 LSM4-201ENST00000252816 986 ntTSL 2 BASIC32.76■■■□□ 2.83
CCDC61Q9Y6R9 CTAG1B-202ENST00000359887 998 ntTSL 2 BASIC32.76■■■□□ 2.83
CCDC61Q9Y6R9 MIR638-201ENST00000385237 100 ntBASIC32.76■■■□□ 2.83
CCDC61Q9Y6R9 AC092807.3-205ENST00000467666 531 ntTSL 3 BASIC32.76■■■□□ 2.83
CCDC61Q9Y6R9 MIR6724-1-201ENST00000616420 92 ntBASIC32.76■■■□□ 2.83
CCDC61Q9Y6R9 MIR6724-2-201ENST00000616483 92 ntBASIC32.76■■■□□ 2.83
CCDC61Q9Y6R9 MIR6724-4-201ENST00000617390 92 ntBASIC32.76■■■□□ 2.83
CCDC61Q9Y6R9 MIR6724-3-201ENST00000622482 92 ntBASIC32.76■■■□□ 2.83
CCDC61Q9Y6R9 TSPAN10-203ENST00000574882 1837 ntAPPRIS P2 TSL 1 (best) BASIC32.76■■■□□ 2.83
CCDC61Q9Y6R9 PDSS1-201ENST00000376215 1626 ntAPPRIS P1 TSL 1 (best) BASIC32.76■■■□□ 2.83
CCDC61Q9Y6R9 PLEKHF1-201ENST00000436066 2084 ntAPPRIS P1 TSL 1 (best) BASIC32.76■■■□□ 2.83
CCDC61Q9Y6R9 SHF-206ENST00000560471 2499 ntTSL 5 BASIC32.75■■■□□ 2.83
CCDC61Q9Y6R9 SPOCK3-221ENST00000512648 1456 ntTSL 1 (best) BASIC32.75■■■□□ 2.83
CCDC61Q9Y6R9 USP2-204ENST00000525735 1704 ntAPPRIS ALT1 TSL 1 (best) BASIC32.75■■■□□ 2.83
CCDC61Q9Y6R9 EIF4EBP1-201ENST00000338825 1020 ntAPPRIS P1 TSL 1 (best) BASIC32.75■■■□□ 2.83
Retrieved 100 of 98,524 protein–RNA pairs in 38.8 ms