Protein–RNA interactions for Protein: Q92900

UPF1, Regulator of nonsense transcripts 1, humanhuman

Known RBP eCLIP

Length 1,129 aa.

Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1Q92900 MID1IP1-204ENST00000614558 3781 ntAPPRIS P1 TSL 5 BASIC15.74■□□□□ 0.112e-11■■■■■ 40.9
UPF1Q92900 SMARCD2-212ENST00000613943 2342 ntTSL 5 BASIC20.73■□□□□ 0.914e-10■■■■■ 40.9
UPF1Q92900 SMARCD2-203ENST00000448276 2716 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.764e-10■■■■■ 40.9
UPF1Q92900 CALM1-202ENST00000447653 1104 ntAPPRIS ALT1 TSL 2 BASIC27.35■■□□□ 1.974e-71■■■■■ 40.8
UPF1Q92900 CALM1-205ENST00000553542 877 ntTSL 5 BASIC27.15■■□□□ 1.944e-71■■■■■ 40.8
UPF1Q92900 ARAP1-203ENST00000393605 4778 ntAPPRIS ALT2 TSL 1 (best) BASIC15.49■□□□□ 0.072e-9■■■■■ 40.8
UPF1Q92900 ARAP1-210ENST00000465814 5612 ntTSL 214.5□□□□□ -0.092e-9■■■■■ 40.8
UPF1Q92900 ARAP1-204ENST00000393609 5145 ntAPPRIS ALT2 TSL 2 BASIC14.22□□□□□ -0.132e-9■■■■■ 40.8
UPF1Q92900 ARAP1-201ENST00000334211 4942 ntAPPRIS P3 TSL 1 (best) BASIC13.84□□□□□ -0.192e-9■■■■■ 40.8
UPF1Q92900 ARAP1-202ENST00000359373 5767 ntAPPRIS ALT2 TSL 2 BASIC13.52□□□□□ -0.252e-9■■■■■ 40.8
UPF1Q92900 ARAP1-209ENST00000455638 2683 ntTSL 5 BASIC13.04□□□□□ -0.322e-9■■■■■ 40.8
UPF1Q92900 ARAP1-211ENST00000495878 2758 ntTSL 1 (best)13.03□□□□□ -0.322e-9■■■■■ 40.8
UPF1Q92900 EIF4G1-201ENST00000342981 5667 ntAPPRIS ALT1 TSL 1 (best) BASIC14.54□□□□□ -0.089e-13■■■■■ 40.8
UPF1Q92900 PAQR4-203ENST00000572687 2251 ntTSL 2 BASIC22.87■■□□□ 1.251e-7■■■■■ 40.8
UPF1Q92900 PAQR4-201ENST00000293978 2644 ntTSL 2 BASIC19.78■□□□□ 0.761e-7■■■■■ 40.8
UPF1Q92900 PAQR4-202ENST00000318782 2793 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.371e-7■■■■■ 40.8
UPF1Q92900 ORMDL3-202ENST00000394169 2230 ntAPPRIS P1 TSL 2 BASIC16.31■□□□□ 0.22e-68■■■■■ 40.7
UPF1Q92900 TMEM184B-211ENST00000504337 1063 ntTSL 429.88■■■□□ 2.371e-6■■■■■ 40.7
UPF1Q92900 SCARB1-201ENST00000261693 2611 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.593e-8■■■■■ 40.7
UPF1Q92900 SCARB1-203ENST00000415380 2731 ntTSL 2 BASIC17.43■□□□□ 0.383e-8■■■■■ 40.7
UPF1Q92900 SCARB1-202ENST00000339570 3329 ntTSL 5 BASIC15.53■□□□□ 0.083e-8■■■■■ 40.7
UPF1Q92900 CMIP-209ENST00000566513 2288 ntTSL 5 BASIC16.96■□□□□ 0.311e-27■■■■■ 40.7
UPF1Q92900 MLLT1-203ENST00000587473 556 ntTSL 221.29■■□□□ 11e-18■■■■■ 40.6
UPF1Q92900 FAM178B-205ENST00000494172 592 ntTSL 324.81■■□□□ 1.566e-7■■■■■ 40.6
UPF1Q92900 FAM178B-204ENST00000490605 2710 ntAPPRIS ALT2 TSL 5 BASIC19.55■□□□□ 0.726e-7■■■■■ 40.6
UPF1Q92900 FAM178B-201ENST00000393526 1004 ntAPPRIS P3 TSL 1 (best) BASIC17.8■□□□□ 0.446e-7■■■■■ 40.6
UPF1Q92900 FAM178B-202ENST00000470789 722 ntTSL 1 (best)15.82■□□□□ 0.126e-7■■■■■ 40.6
UPF1Q92900 BCAR1-201ENST00000162330 3221 ntAPPRIS P3 TSL 1 (best) BASIC18.31■□□□□ 0.529e-28■■■■■ 40.6
UPF1Q92900 BCAR1-218ENST00000566982 3024 ntTSL 216.87■□□□□ 0.299e-28■■■■■ 40.6
UPF1Q92900 BCAR1-212ENST00000563038 2692 ntTSL 1 (best)16.05■□□□□ 0.169e-28■■■■■ 40.6
UPF1Q92900 BCAR1-211ENST00000562556 4659 ntTSL 213.49□□□□□ -0.259e-28■■■■■ 40.6
UPF1Q92900 TMEM129-204ENST00000476253 958 ntTSL 225.87■■□□□ 1.737e-12■■■■■ 40.6
UPF1Q92900 LZIC-205ENST00000488540 652 ntTSL 28.23□□□□□ -1.092e-9■■■■■ 40.5
UPF1Q92900 NCMAP-201ENST00000374392 3953 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.191e-9■■■■■ 40.5
UPF1Q92900 NCMAP-202ENST00000486262 4063 ntTSL 38.14□□□□□ -1.111e-9■■■■■ 40.5
UPF1Q92900 NCLN-207ENST00000592235 380 ntTSL 524.69■■□□□ 1.543e-15■■■■■ 40.5
UPF1Q92900 NCLN-205ENST00000590671 2070 ntTSL 2 BASIC23.02■■□□□ 1.283e-15■■■■■ 40.5
UPF1Q92900 KDM4B-203ENST00000536461 5027 ntTSL 1 (best) BASIC16.84■□□□□ 0.296e-9■■■■■ 40.5
UPF1Q92900 SPCS3-201ENST00000503362 4571 ntAPPRIS P1 TSL 1 (best) BASIC13.09□□□□□ -0.312e-9■■■■■ 40.5
UPF1Q92900 EGLN2-205ENST00000593477 1391 ntTSL 224.44■■□□□ 1.52e-7■■■■■ 40.5
UPF1Q92900 EGLN2-201ENST00000303961 2102 ntAPPRIS P1 TSL 1 (best) BASIC23.46■■□□□ 1.352e-7■■■■■ 40.5
UPF1Q92900 EGLN2-202ENST00000406058 2150 ntAPPRIS P1 TSL 1 (best) BASIC22.39■■□□□ 1.182e-7■■■■■ 40.5
UPF1Q92900 EGLN2-209ENST00000594140 991 ntTSL 2 BASIC20.91■□□□□ 0.942e-7■■■■■ 40.5
UPF1Q92900 EGLN2-207ENST00000593726 2821 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.272e-7■■■■■ 40.5
UPF1Q92900 EGLN2-216ENST00000599579 3894 ntTSL 213.84□□□□□ -0.192e-7■■■■■ 40.5
UPF1Q92900 EGLN2-204ENST00000593445 3034 ntTSL 1 (best)13.1□□□□□ -0.312e-7■■■■■ 40.5
UPF1Q92900 AC008537.1-201ENST00000601627 575 ntAPPRIS P1 TSL 3 BASIC13.08□□□□□ -0.322e-7■■■■■ 40.5
UPF1Q92900 EGLN2-211ENST00000595051 477 ntTSL 512.26□□□□□ -0.452e-7■■■■■ 40.5
UPF1Q92900 GPR35-203ENST00000407714 1258 ntAPPRIS P3 TSL 1 (best) BASIC29.16■■■□□ 2.265e-11■■■■■ 40.5
UPF1Q92900 CC2D1A-204ENST00000587508 1667 ntTSL 523.99■■□□□ 1.435e-11■■■■■ 40.5
UPF1Q92900 CC2D1A-203ENST00000586955 2743 ntTSL 1 (best)16.01■□□□□ 0.155e-11■■■■■ 40.5
UPF1Q92900 CC2D1A-208ENST00000589606 3117 ntAPPRIS ALT1 TSL 1 (best) BASIC15.06■□□□□ 05e-11■■■■■ 40.5
UPF1Q92900 CC2D1A-201ENST00000318003 3581 ntAPPRIS P2 TSL 1 (best) BASIC13.55□□□□□ -0.245e-11■■■■■ 40.5
UPF1Q92900 UBAP1-205ENST00000626262 1753 ntTSL 223.19■■□□□ 1.33e-12■■■■■ 40.5
UPF1Q92900 UBAP1-204ENST00000625521 2029 ntTSL 2 BASIC23.03■■□□□ 1.283e-12■■■■■ 40.5
UPF1Q92900 ATP11A-201ENST00000375630 8768 ntAPPRIS ALT2 TSL 5 BASIC12.38□□□□□ -0.433e-8■■■■■ 40.4
UPF1Q92900 ATP11A-202ENST00000375645 8795 ntAPPRIS P2 TSL 5 BASIC12.1□□□□□ -0.473e-8■■■■■ 40.4
UPF1Q92900 ATP11A-210ENST00000471555 5786 ntTSL 1 (best)11.16□□□□□ -0.623e-8■■■■■ 40.4
UPF1Q92900 ATP11A-212ENST00000487903 8858 ntAPPRIS P2 TSL 5 BASIC10.5□□□□□ -0.733e-8■■■■■ 40.4
UPF1Q92900 CNN2-206ENST00000564572 2266 nt16.46■□□□□ 0.238e-20■■■■■ 40.4
UPF1Q92900 CNN2-207ENST00000565096 2109 ntTSL 2 BASIC15.73■□□□□ 0.118e-20■■■■■ 40.4
UPF1Q92900 CNN2-202ENST00000348419 2033 ntTSL 2 BASIC15.61■□□□□ 0.098e-20■■■■■ 40.4
UPF1Q92900 CNN2-201ENST00000263097 2179 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.098e-20■■■■■ 40.4
UPF1Q92900 CNN2-205ENST00000562958 2194 ntTSL 2 BASIC14.35□□□□□ -0.118e-20■■■■■ 40.4
UPF1Q92900 SMC4-201ENST00000344722 5356 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.382e-11■■■■■ 40.4
UPF1Q92900 SMC4-202ENST00000357388 5471 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.42e-11■■■■■ 40.4
UPF1Q92900 ARVCF-211ENST00000495096 2549 ntTSL 220.22■□□□□ 0.834e-7■■■■■ 40.4
UPF1Q92900 ARVCF-201ENST00000263207 4041 ntAPPRIS P2 TSL 1 (best) BASIC16.63■□□□□ 0.254e-7■■■■■ 40.4
UPF1Q92900 IER2-202ENST00000587885 1291 ntAPPRIS P1 TSL 3 BASIC25.03■■□□□ 1.69e-10■■■■■ 40.3
UPF1Q92900 PKP3-201ENST00000331563 2809 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.65e-11■■■■■ 40.3
UPF1Q92900 WARS-203ENST00000358655 2466 ntTSL 2 BASIC16.63■□□□□ 0.252e-43■■■■■ 40.3
UPF1Q92900 WARS-201ENST00000344102 2690 ntTSL 5 BASIC12.3□□□□□ -0.442e-43■■■■■ 40.3
UPF1Q92900 WARS-202ENST00000355338 3092 ntAPPRIS P1 TSL 1 (best) BASIC11.31□□□□□ -0.62e-43■■■■■ 40.3
UPF1Q92900 WARS-204ENST00000392882 2938 ntAPPRIS P1 TSL 1 (best) BASIC9.72□□□□□ -0.852e-43■■■■■ 40.3
UPF1Q92900 HES6-203ENST00000409160 1600 ntTSL 2 BASIC39.57■■■■□ 3.925e-9■■■■■ 40.3
UPF1Q92900 HES6-201ENST00000272937 1454 ntAPPRIS P3 TSL 1 (best) BASIC30.89■■■□□ 2.535e-9■■■■■ 40.3
UPF1Q92900 HES6-202ENST00000409002 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC30.17■■■□□ 2.425e-9■■■■■ 40.3
UPF1Q92900 NSMF-207ENST00000371482 2888 ntTSL 1 (best)16.01■□□□□ 0.154e-14■■■■■ 40.3
UPF1Q92900 PRKAG1-206ENST00000548065 2071 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.772e-6■■■■■ 40.3
UPF1Q92900 PRKAG1-202ENST00000546531 1679 ntTSL 516.09■□□□□ 0.172e-6■■■■■ 40.3
UPF1Q92900 PRKAG1-201ENST00000316299 1683 ntTSL 2 BASIC15.84■□□□□ 0.132e-6■■■■■ 40.3
UPF1Q92900 PRKAG1-207ENST00000548362 822 ntTSL 315.01□□□□□ -0.012e-6■■■■■ 40.3
UPF1Q92900 PRKAG1-205ENST00000547306 1531 ntTSL 5 BASIC12.21□□□□□ -0.462e-6■■■■■ 40.3
UPF1Q92900 CYB561A3-219ENST00000544118 1136 ntTSL 5 BASIC21.45■■□□□ 1.022e-7■■■■■ 40.3
UPF1Q92900 CYB561A3-216ENST00000540755 1494 ntTSL 1 (best)19.16■□□□□ 0.662e-7■■■■■ 40.3
UPF1Q92900 CYB561A3-221ENST00000546151 3986 ntTSL 3 BASIC10.06□□□□□ -0.82e-7■■■■■ 40.3
UPF1Q92900 YIPF2-208ENST00000589971 879 ntTSL 229.16■■■□□ 2.269e-17■■■■■ 40.3
UPF1Q92900 YIPF2-212ENST00000592646 950 ntTSL 326.47■■□□□ 1.839e-17■■■■■ 40.3
UPF1Q92900 YIPF2-204ENST00000586748 1550 ntAPPRIS P1 TSL 1 (best) BASIC23.55■■□□□ 1.369e-17■■■■■ 40.3
UPF1Q92900 ING5-201ENST00000313552 5196 ntAPPRIS P3 TSL 1 (best) BASIC16.99■□□□□ 0.311e-8■■■■■ 40.3
UPF1Q92900 CMIP-202ENST00000537098 4357 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.425e-9■■■■■ 40.3
UPF1Q92900 CMIP-211ENST00000621537 4000 ntTSL 5 BASIC15.67■□□□□ 0.15e-9■■■■■ 40.3
UPF1Q92900 CMIP-203ENST00000539778 3937 ntTSL 1 (best) BASIC14.62□□□□□ -0.075e-9■■■■■ 40.3
UPF1Q92900 FAM83H-202ENST00000395103 3611 ntTSL 216.36■□□□□ 0.211e-8■■■■■ 40.3
UPF1Q92900 DDX19A-201ENST00000302243 2997 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.46e-9■■■■■ 40.3
UPF1Q92900 DDX19A-209ENST00000566574 5007 ntTSL 1 (best)12.32□□□□□ -0.446e-9■■■■■ 40.3
UPF1Q92900 DDX19A-214ENST00000569771 3067 ntTSL 1 (best)11.16□□□□□ -0.626e-9■■■■■ 40.3
UPF1Q92900 GPC1-207ENST00000466624 782 ntTSL 221■□□□□ 0.952e-11■■■■■ 40.2
UPF1Q92900 IL15RA-208ENST00000397251 1046 ntAPPRIS ALT2 TSL 1 (best) BASIC31.02■■■□□ 2.562e-10■■■■■ 40.2
UPF1Q92900 IL15RA-220ENST00000620345 1115 ntAPPRIS ALT2 TSL 1 (best) BASIC31.02■■■□□ 2.562e-10■■■■■ 40.2
Retrieved 100 of 15,879 protein–RNA pairs in 194.4 ms