RNA–Protein interactions for RNA: ENST00000540755.5

CYB561A3-216, Transcript of cytochrome b561 family member A3, humanhuman

TSL 1 (best)

Gene CYB561A3, Length 1,494 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CYB561A3-216ENST00000540755 NISCHQ9Y2I1 1504 aa32.71■■■□□ 2.83
CYB561A3-216ENST00000540755 CCDC180Q9P1Z9 1646 aa29.26■■■□□ 2.27
CYB561A3-216ENST00000540755 ABCC9O60706 1549 aa29.13■■■□□ 2.25
CYB561A3-216ENST00000540755 RB1CC1Q8TDY2 1594 aa27.76■■■□□ 2.03
CYB561A3-216ENST00000540755 NACADO15069 1562 aa27.6■■■□□ 2.01
CYB561A3-216ENST00000540755 ZCCHC6Q5VYS8 1495 aaKnown RBP27.47■■□□□ 1.99
CYB561A3-216ENST00000540755 DCAF8L2P0C7V8 631 aa27.29■■□□□ 1.96
CYB561A3-216ENST00000540755 MYO15BQ96JP2 1530 aa27.28■■□□□ 1.96
CYB561A3-216ENST00000540755 DNAJC5BQ9UF47 199 aa27.25■■□□□ 1.95
CYB561A3-216ENST00000540755 UNC13AQ9UPW8 1703 aa27.2■■□□□ 1.94
CYB561A3-216ENST00000540755 DCAF1Q9Y4B6 1507 aa27.12■■□□□ 1.93
CYB561A3-216ENST00000540755 PABPN1Q86U42 306 aaKnown RBP eCLIP27.08■■□□□ 1.93
CYB561A3-216ENST00000540755 BICRAQ9NZM4 1560 aa27.03■■□□□ 1.92
CYB561A3-216ENST00000540755 SCRIBQ14160 1630 aa26.65■■□□□ 1.86
CYB561A3-216ENST00000540755 SHROOM4Q9ULL8 1493 aa26.65■■□□□ 1.86
CYB561A3-216ENST00000540755 CC2D2AQ9P2K1 1620 aa26.34■■□□□ 1.81
CYB561A3-216ENST00000540755 EIF4G1Q04637 1599 aaKnown RBP26.32■■□□□ 1.8
CYB561A3-216ENST00000540755 CECR2Q9BXF3 1484 aa26.23■■□□□ 1.79
CYB561A3-216ENST00000540755 NCAPD3P42695 1498 aa25.48■■□□□ 1.67
CYB561A3-216ENST00000540755 SMARCA4P51532 1647 aa25.44■■□□□ 1.66
CYB561A3-216ENST00000540755 ATAD2BQ9ULI0 1458 aa25.43■■□□□ 1.66
CYB561A3-216ENST00000540755 SMARCA2P51531 1590 aa25.34■■□□□ 1.65
CYB561A3-216ENST00000540755 HMGXB3Q12766 1538 aa25.33■■□□□ 1.65
CYB561A3-216ENST00000540755 SUPT5HO00267 1087 aaKnown RBP25.33■■□□□ 1.65
CYB561A3-216ENST00000540755 BAZ1AQ9NRL2 1556 aaPredicted RBP25.3■■□□□ 1.64
CYB561A3-216ENST00000540755 RSF1Q96T23 1441 aaPredicted RBP25.27■■□□□ 1.64
CYB561A3-216ENST00000540755 MROH2BQ7Z745 1585 aa25.23■■□□□ 1.63
CYB561A3-216ENST00000540755 PEG3Q9GZU2 1588 aa25.21■■□□□ 1.63
CYB561A3-216ENST00000540755 BAZ1BQ9UIG0 1483 aaKnown RBP25.16■■□□□ 1.62
CYB561A3-216ENST00000540755 ERCC6Q03468 1493 aa25.1■■□□□ 1.61
CYB561A3-216ENST00000540755 CUX2O14529 1486 aa25.08■■□□□ 1.6
CYB561A3-216ENST00000540755 NESP48681 1621 aa25.07■■□□□ 1.6
CYB561A3-216ENST00000540755 WIZO95785 1651 aa25.04■■□□□ 1.6
CYB561A3-216ENST00000540755 DNAJC5Q9H3Z4 198 aa24.91■■□□□ 1.58
CYB561A3-216ENST00000540755 LAMC3Q9Y6N6 1575 aa24.89■■□□□ 1.58
CYB561A3-216ENST00000540755 THOC2Q8NI27 1593 aaKnown RBP24.86■■□□□ 1.57
CYB561A3-216ENST00000540755 TOP2AP11388 1531 aaKnown RBP24.81■■□□□ 1.56
CYB561A3-216ENST00000540755 KIF21AQ7Z4S6 1674 aa24.77■■□□□ 1.56
CYB561A3-216ENST00000540755 PDS5BQ9NTI5 1447 aa24.69■■□□□ 1.54
CYB561A3-216ENST00000540755 CADPSQ9ULU8 1353 aa24.68■■□□□ 1.54
CYB561A3-216ENST00000540755 MRC2Q9UBG0 1479 aa24.53■■□□□ 1.52
CYB561A3-216ENST00000540755 WDR62O43379 1518 aa24.51■■□□□ 1.51
CYB561A3-216ENST00000540755 CCDC88BA6NC98 1476 aa24.49■■□□□ 1.51
CYB561A3-216ENST00000540755 CFTRP13569 1480 aa24.46■■□□□ 1.51
CYB561A3-216ENST00000540755 CEP164Q9UPV0 1460 aa24.44■■□□□ 1.5
CYB561A3-216ENST00000540755 FANCD2Q9BXW9 1451 aa24.43■■□□□ 1.5
CYB561A3-216ENST00000540755 URB2Q14146 1524 aaKnown RBP24.26■■□□□ 1.47
CYB561A3-216ENST00000540755 PRDM2Q13029 1718 aa24.24■■□□□ 1.47
CYB561A3-216ENST00000540755 CHIC1Q5VXU3 224 aa24.23■■□□□ 1.47
CYB561A3-216ENST00000540755 TOPBP1Q92547 1522 aa23.99■■□□□ 1.43
CYB561A3-216ENST00000540755 ZNF608Q9ULD9 1512 aaPredicted RBP23.94■■□□□ 1.42
CYB561A3-216ENST00000540755 IFT140Q96RY7 1462 aa23.94■■□□□ 1.42
CYB561A3-216ENST00000540755 ABCC8Q09428 1581 aa23.91■■□□□ 1.42
CYB561A3-216ENST00000540755 DNMBPQ6XZF7 1577 aa23.91■■□□□ 1.42
CYB561A3-216ENST00000540755 TRIM41Q8WV44 630 aa23.87■■□□□ 1.41
CYB561A3-216ENST00000540755 EIF4G3O43432 1585 aaKnown RBP23.83■■□□□ 1.41
CYB561A3-216ENST00000540755 OSCARQ8IYS5 282 aa23.83■■□□□ 1.41
CYB561A3-216ENST00000540755 TARBP1Q13395 1621 aaKnown RBP23.8■■□□□ 1.4
CYB561A3-216ENST00000540755 WRNQ14191 1432 aaPredicted RBP eCLIP23.8■■□□□ 1.4
CYB561A3-216ENST00000540755 POLA1P09884 1462 aaPredicted RBP23.75■■□□□ 1.39
CYB561A3-216ENST00000540755 SYNJ1O43426 1573 aa23.73■■□□□ 1.39
CYB561A3-216ENST00000540755 BIVM-ERCC5R4GMW8 1640 aa23.69■■□□□ 1.38
CYB561A3-216ENST00000540755 AQRO60306 1485 aaKnown RBP eCLIP23.69■■□□□ 1.38
CYB561A3-216ENST00000540755 TOP2BQ02880 1626 aa23.68■■□□□ 1.38
CYB561A3-216ENST00000540755 RIMBP3CA6NJZ7 1639 aa23.65■■□□□ 1.38
CYB561A3-216ENST00000540755 RIMBP3BA6NNM3 1639 aa23.65■■□□□ 1.38
CYB561A3-216ENST00000540755 RIMBP3Q9UFD9 1639 aa23.65■■□□□ 1.38
CYB561A3-216ENST00000540755 RAD54L2Q9Y4B4 1467 aa23.65■■□□□ 1.38
CYB561A3-216ENST00000540755 CUX1P39880 1505 aa23.63■■□□□ 1.37
CYB561A3-216ENST00000540755 CHD1O14646 1710 aa23.62■■□□□ 1.37
CYB561A3-216ENST00000540755 FGD5Q6ZNL6 1462 aa23.61■■□□□ 1.37
CYB561A3-216ENST00000540755 ARHGEF11O15085 1522 aa23.58■■□□□ 1.37
CYB561A3-216ENST00000540755 SOGA1O94964 1423 aa23.57■■□□□ 1.36
CYB561A3-216ENST00000540755 TDRD9Q8NDG6 1382 aaKnown RBP23.54■■□□□ 1.36
CYB561A3-216ENST00000540755 WDR97A6NE52 1622 aa23.53■■□□□ 1.36
CYB561A3-216ENST00000540755 SNAPC4Q5SXM2 1469 aa23.48■■□□□ 1.35
CYB561A3-216ENST00000540755 EEA1Q15075 1411 aa23.43■■□□□ 1.34
CYB561A3-216ENST00000540755 MAGI1Q96QZ7 1491 aaPredicted RBP23.41■■□□□ 1.34
CYB561A3-216ENST00000540755 GRIN2BQ13224 1484 aa23.4■■□□□ 1.34
CYB561A3-216ENST00000540755 FBLN2P98095 1184 aa23.4■■□□□ 1.34
CYB561A3-216ENST00000540755 CLASP1Q7Z460 1538 aa23.38■■□□□ 1.33
CYB561A3-216ENST00000540755 ARAP1Q96P48 1450 aa23.37■■□□□ 1.33
CYB561A3-216ENST00000540755 FAM9AQ8IZU1 332 aaPredicted RBP23.36■■□□□ 1.33
CYB561A3-216ENST00000540755 PBRM1Q86U86 1689 aa23.35■■□□□ 1.33
CYB561A3-216ENST00000540755 ABCA5Q8WWZ7 1642 aa23.35■■□□□ 1.33
CYB561A3-216ENST00000540755 ABCA10Q8WWZ4 1543 aa23.35■■□□□ 1.33
CYB561A3-216ENST00000540755 RUSC2Q8N2Y8 1516 aa23.32■■□□□ 1.32
CYB561A3-216ENST00000540755 SYNJ2O15056 1496 aa23.32■■□□□ 1.32
CYB561A3-216ENST00000540755 GAPVD1Q14C86 1478 aa23.32■■□□□ 1.32
CYB561A3-216ENST00000540755 CYB5RLQ6IPT4 315 aa23.28■■□□□ 1.32
CYB561A3-216ENST00000540755 CHMP7Q8WUX9 453 aaPredicted RBP23.25■■□□□ 1.31
CYB561A3-216ENST00000540755 LOC105371045A0A1W2PR82 267 aa23.23■■□□□ 1.31
CYB561A3-216ENST00000540755 CSRNP3Q8WYN3 585 aa23.23■■□□□ 1.31
CYB561A3-216ENST00000540755 KIF27Q86VH2 1401 aa23.22■■□□□ 1.31
CYB561A3-216ENST00000540755 ADAMTS12P58397 1594 aa23.17■■□□□ 1.3
CYB561A3-216ENST00000540755 KIF21BO75037 1637 aa23.15■■□□□ 1.3
CYB561A3-216ENST00000540755 GRIN2AQ12879 1464 aa23.13■■□□□ 1.29
CYB561A3-216ENST00000540755 GOLGA3Q08378 1498 aa23.07■■□□□ 1.28
CYB561A3-216ENST00000540755 CEP170Q5SW79 1584 aa23.06■■□□□ 1.28
CYB561A3-216ENST00000540755 NUP160Q12769 1436 aa23.06■■□□□ 1.28
Retrieved 100 of 20,778 RNA–protein pairs in 7.8 ms