RNA–Protein interactions for RNA: ENST00000590671.5

NCLN-205, Transcript of nicalin, human

TSL 2 BASIC

Gene NCLN, Length 2,070 nt, Biotype protein coding, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
NCLN-205	ENST00000590671	NISCH	Q9Y2I1	1504 aa		44.93	■■■■■ 4.78
NCLN-205	ENST00000590671	CCDC180	Q9P1Z9	1646 aa		38.86	■■■■□ 3.81
NCLN-205	ENST00000590671	ZCCHC6	Q5VYS8	1495 aa	Known RBP	37.78	■■■■□ 3.64
NCLN-205	ENST00000590671	DCAF8L2	P0C7V8	631 aa		37.3	■■■■□ 3.56
NCLN-205	ENST00000590671	SHROOM4	Q9ULL8	1493 aa		37.17	■■■■□ 3.54
NCLN-205	ENST00000590671	DCAF1	Q9Y4B6	1507 aa		36.96	■■■■□ 3.51
NCLN-205	ENST00000590671	ABCC9	O60706	1549 aa		36.84	■■■■□ 3.49
NCLN-205	ENST00000590671	MYO15B	Q96JP2	1530 aa		36.37	■■■■□ 3.41
NCLN-205	ENST00000590671	NACAD	O15069	1562 aa		36.17	■■■■□ 3.38
NCLN-205	ENST00000590671	SCRIB	Q14160	1630 aa		36.06	■■■■□ 3.36
NCLN-205	ENST00000590671	SUPT5H	O00267	1087 aa	Known RBP	35.86	■■■■□ 3.33
NCLN-205	ENST00000590671	RB1CC1	Q8TDY2	1594 aa		35.82	■■■■□ 3.33
NCLN-205	ENST00000590671	UNC13A	Q9UPW8	1703 aa		35.26	■■■■□ 3.23
NCLN-205	ENST00000590671	CECR2	Q9BXF3	1484 aa		35.06	■■■■□ 3.2
NCLN-205	ENST00000590671	RSF1	Q96T23	1441 aa	Predicted RBP	35.04	■■■■□ 3.2
NCLN-205	ENST00000590671	PABPN1	Q86U42	306 aa	Known RBP eCLIP	34.91	■■■■□ 3.18	8e-6	■□□□□ 8.9
NCLN-205	ENST00000590671	BICRA	Q9NZM4	1560 aa		34.9	■■■■□ 3.18
NCLN-205	ENST00000590671	MROH2B	Q7Z745	1585 aa		34.83	■■■■□ 3.17
NCLN-205	ENST00000590671	BAZ1A	Q9NRL2	1556 aa	Predicted RBP	34.6	■■■■□ 3.13
NCLN-205	ENST00000590671	WIZ	O95785	1651 aa		34.57	■■■■□ 3.12
NCLN-205	ENST00000590671	SMARCA4	P51532	1647 aa		34.47	■■■■□ 3.11
NCLN-205	ENST00000590671	CHIC1	Q5VXU3	224 aa		34.37	■■■■□ 3.09
NCLN-205	ENST00000590671	TOP2A	P11388	1531 aa	Known RBP	34.07	■■■■□ 3.04
NCLN-205	ENST00000590671	PEG3	Q9GZU2	1588 aa		33.94	■■■■□ 3.02
NCLN-205	ENST00000590671	ATAD2B	Q9ULI0	1458 aa		33.87	■■■■□ 3.01
NCLN-205	ENST00000590671	CCDC88B	A6NC98	1476 aa		33.84	■■■■□ 3.01
NCLN-205	ENST00000590671	SMARCA2	P51531	1590 aa		33.83	■■■■□ 3.01
NCLN-205	ENST00000590671	EIF4G1	Q04637	1599 aa	Known RBP	33.78	■■■■□ 3
NCLN-205	ENST00000590671	BAZ1B	Q9UIG0	1483 aa	Known RBP	33.67	■■■□□ 2.98
NCLN-205	ENST00000590671	TRIM41	Q8WV44	630 aa		33.55	■■■□□ 2.96
NCLN-205	ENST00000590671	NCAPD3	P42695	1498 aa		33.45	■■■□□ 2.95
NCLN-205	ENST00000590671	HMGXB3	Q12766	1538 aa		33.38	■■■□□ 2.93
NCLN-205	ENST00000590671	ABCC8	Q09428	1581 aa		33.32	■■■□□ 2.92
NCLN-205	ENST00000590671	CC2D2A	Q9P2K1	1620 aa		33.25	■■■□□ 2.91
NCLN-205	ENST00000590671	LOC105371045	A0A1W2PR82	267 aa		33.24	■■■□□ 2.91
NCLN-205	ENST00000590671	FAM9A	Q8IZU1	332 aa	Predicted RBP	33.14	■■■□□ 2.9
NCLN-205	ENST00000590671	WRN	Q14191	1432 aa	Predicted RBP eCLIP	32.92	■■■□□ 2.86
NCLN-205	ENST00000590671	SYNJ1	O43426	1573 aa		32.85	■■■□□ 2.85
NCLN-205	ENST00000590671	CFTR	P13569	1480 aa		32.83	■■■□□ 2.85
NCLN-205	ENST00000590671	EHMT2	Q96KQ7	1210 aa		32.82	■■■□□ 2.84
NCLN-205	ENST00000590671	SOGA1	O94964	1423 aa		32.75	■■■□□ 2.83
NCLN-205	ENST00000590671	DNAJC5B	Q9UF47	199 aa		32.67	■■■□□ 2.82
NCLN-205	ENST00000590671	CADPS	Q9ULU8	1353 aa		32.66	■■■□□ 2.82
NCLN-205	ENST00000590671	RUSC2	Q8N2Y8	1516 aa		32.66	■■■□□ 2.82
NCLN-205	ENST00000590671	TOP2B	Q02880	1626 aa		32.58	■■■□□ 2.81
NCLN-205	ENST00000590671	PRDM2	Q13029	1718 aa		32.55	■■■□□ 2.8
NCLN-205	ENST00000590671	CUX1	P39880	1505 aa		32.52	■■■□□ 2.8
NCLN-205	ENST00000590671	BIVM-ERCC5	R4GMW8	1640 aa		32.5	■■■□□ 2.79
NCLN-205	ENST00000590671	NES	P48681	1621 aa		32.48	■■■□□ 2.79
NCLN-205	ENST00000590671	CSRNP3	Q8WYN3	585 aa		32.42	■■■□□ 2.78
NCLN-205	ENST00000590671	EEA1	Q15075	1411 aa		32.42	■■■□□ 2.78
NCLN-205	ENST00000590671	FANCD2	Q9BXW9	1451 aa		32.34	■■■□□ 2.77
NCLN-205	ENST00000590671	LAMC3	Q9Y6N6	1575 aa		32.22	■■■□□ 2.75
NCLN-205	ENST00000590671	GOLGA3	Q08378	1498 aa		32.11	■■■□□ 2.73
NCLN-205	ENST00000590671	FGD5	Q6ZNL6	1462 aa		32.11	■■■□□ 2.73
NCLN-205	ENST00000590671	UBTF	P17480	764 aa	Known RBP	32.11	■■■□□ 2.73
NCLN-205	ENST00000590671	TNIK	Q9UKE5	1360 aa		32.08	■■■□□ 2.73
NCLN-205	ENST00000590671	KIF21B	O75037	1637 aa		32.08	■■■□□ 2.73
NCLN-205	ENST00000590671	CEP164	Q9UPV0	1460 aa		32.07	■■■□□ 2.72
NCLN-205	ENST00000590671	RAPGEF2	Q9Y4G8	1499 aa		32.03	■■■□□ 2.72
NCLN-205	ENST00000590671	DNMBP	Q6XZF7	1577 aa		32.02	■■■□□ 2.72
NCLN-205	ENST00000590671	TOPBP1	Q92547	1522 aa		32.02	■■■□□ 2.72
NCLN-205	ENST00000590671	CEP162	Q5TB80	1403 aa		32.01	■■■□□ 2.72
NCLN-205	ENST00000590671	KIF27	Q86VH2	1401 aa		32.01	■■■□□ 2.72
NCLN-205	ENST00000590671	PDS5B	Q9NTI5	1447 aa		32	■■■□□ 2.71
NCLN-205	ENST00000590671	URB2	Q14146	1524 aa	Known RBP	31.97	■■■□□ 2.71
NCLN-205	ENST00000590671	KIF21A	Q7Z4S6	1674 aa		31.96	■■■□□ 2.71
NCLN-205	ENST00000590671	CUX2	O14529	1486 aa		31.96	■■■□□ 2.71
NCLN-205	ENST00000590671	PCGF6	Q9BYE7	350 aa		31.94	■■■□□ 2.7
NCLN-205	ENST00000590671	POLA1	P09884	1462 aa	Predicted RBP	31.91	■■■□□ 2.7
NCLN-205	ENST00000590671	PRX	Q9BXM0	1461 aa		31.91	■■■□□ 2.7
NCLN-205	ENST00000590671	RAD54L2	Q9Y4B4	1467 aa		31.91	■■■□□ 2.7
NCLN-205	ENST00000590671	IGF1R	P08069	1367 aa		31.8	■■■□□ 2.68
NCLN-205	ENST00000590671	ERICH3	Q5RHP9	1530 aa		31.78	■■■□□ 2.68
NCLN-205	ENST00000590671	PPARGC1B	Q86YN6	1023 aa	Known RBP	31.75	■■■□□ 2.67
NCLN-205	ENST00000590671	ABCA10	Q8WWZ4	1543 aa		31.74	■■■□□ 2.67
NCLN-205	ENST00000590671	RANGAP1	P46060	587 aa	Predicted RBP	31.72	■■■□□ 2.67
NCLN-205	ENST00000590671	TRIM26	Q12899	539 aa	Predicted RBP	31.69	■■■□□ 2.66
NCLN-205	ENST00000590671	CLIP1	P30622	1438 aa		31.68	■■■□□ 2.66
NCLN-205	ENST00000590671	CARMIL1	Q5VZK9	1371 aa		31.62	■■■□□ 2.65
NCLN-205	ENST00000590671	WDR97	A6NE52	1622 aa		31.61	■■■□□ 2.65
NCLN-205	ENST00000590671	MRC2	Q9UBG0	1479 aa		31.6	■■■□□ 2.65
NCLN-205	ENST00000590671	TDRD9	Q8NDG6	1382 aa	Known RBP	31.57	■■■□□ 2.64
NCLN-205	ENST00000590671	TARBP1	Q13395	1621 aa	Known RBP	31.51	■■■□□ 2.63
NCLN-205	ENST00000590671	ABCA5	Q8WWZ7	1642 aa		31.48	■■■□□ 2.63
NCLN-205	ENST00000590671	ERCC6	Q03468	1493 aa		31.45	■■■□□ 2.62
NCLN-205	ENST00000590671	TTBK1	Q5TCY1	1321 aa	Predicted RBP	31.44	■■■□□ 2.62
NCLN-205	ENST00000590671	GAPVD1	Q14C86	1478 aa		31.43	■■■□□ 2.62
NCLN-205	ENST00000590671	WDR62	O43379	1518 aa		31.42	■■■□□ 2.62
NCLN-205	ENST00000590671	VPS8	Q8N3P4	1428 aa		31.4	■■■□□ 2.62
NCLN-205	ENST00000590671	ARAP1	Q96P48	1450 aa		31.37	■■■□□ 2.61
NCLN-205	ENST00000590671	CUL7	Q14999	1698 aa		31.36	■■■□□ 2.61
NCLN-205	ENST00000590671	AQR	O60306	1485 aa	Known RBP eCLIP	31.32	■■■□□ 2.6	4e-7	■■■■□ 22.5
NCLN-205	ENST00000590671	ARHGAP35	Q9NRY4	1499 aa		31.31	■■■□□ 2.6
NCLN-205	ENST00000590671	THOC2	Q8NI27	1593 aa	Known RBP	31.3	■■■□□ 2.6
NCLN-205	ENST00000590671	ZNF608	Q9ULD9	1512 aa	Predicted RBP	31.26	■■■□□ 2.59
NCLN-205	ENST00000590671	IFT140	Q96RY7	1462 aa		31.23	■■■□□ 2.59
NCLN-205	ENST00000590671	PBRM1	Q86U86	1689 aa		31.2	■■■□□ 2.58
NCLN-205	ENST00000590671	HRC	P23327	699 aa		31.13	■■■□□ 2.57
NCLN-205	ENST00000590671	CTTNBP2	Q8WZ74	1663 aa		31.1	■■■□□ 2.57

Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms