Protein–RNA interactions for Protein: Q6ZN17

LIN28B, Protein lin-28 homolog B, humanhuman

Known RBP eCLIP

Length 250 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIN28BQ6ZN17 SEPT2-221ENST00000445030 575 ntTSL 39.07□□□□□ -0.961e-13■■□□□ 12.4
LIN28BQ6ZN17 SEPT2-241ENST00000484740 563 ntTSL 36.71□□□□□ -1.341e-13■■□□□ 12.4
LIN28BQ6ZN17 SEPT2-220ENST00000443492 558 ntTSL 56.21□□□□□ -1.421e-13■■□□□ 12.4
LIN28BQ6ZN17 PRKAR1A-221ENST00000592800 1036 ntTSL 25.77□□□□□ -1.492e-10■■□□□ 12.4
LIN28BQ6ZN17 PRKAR1A-212ENST00000586541 570 ntTSL 55.71□□□□□ -1.52e-10■■□□□ 12.4
LIN28BQ6ZN17 SEPT2-222ENST00000449239 599 ntTSL 25.39□□□□□ -1.551e-13■■□□□ 12.4
LIN28BQ6ZN17 PRKAR1A-209ENST00000585907 564 ntTSL 25.37□□□□□ -1.552e-10■■□□□ 12.4
LIN28BQ6ZN17 SEPT2-232ENST00000469434 583 ntTSL 34.88□□□□□ -1.631e-13■■□□□ 12.4
LIN28BQ6ZN17 SEPT2-228ENST00000464128 565 ntTSL 44.6□□□□□ -1.671e-13■■□□□ 12.4
LIN28BQ6ZN17 SEPT2-233ENST00000473479 659 ntTSL 23.86□□□□□ -1.791e-13■■□□□ 12.4
LIN28BQ6ZN17 TFE3-203ENST00000487451 1058 ntTSL 319.18■□□□□ 0.662e-6■■□□□ 12.4
LIN28BQ6ZN17 TFE3-201ENST00000315869 3415 ntAPPRIS P1 TSL 1 (best) BASIC14.62□□□□□ -0.072e-6■■□□□ 12.4
LIN28BQ6ZN17 TFE3-204ENST00000493583 3279 ntTSL 213.32□□□□□ -0.282e-6■■□□□ 12.4
LIN28BQ6ZN17 HSPA9-204ENST00000504902 887 ntTSL 516.88■□□□□ 0.292e-10■■□□□ 12.3
LIN28BQ6ZN17 MYL12A-208ENST00000580353 565 ntTSL 217.61■□□□□ 0.411e-7■■□□□ 12.3
LIN28BQ6ZN17 MYL12A-206ENST00000578611 1004 ntAPPRIS P1 TSL 3 BASIC12.91□□□□□ -0.341e-7■■□□□ 12.3
LIN28BQ6ZN17 MYL12A-207ENST00000579226 947 ntAPPRIS P1 TSL 2 BASIC12.76□□□□□ -0.371e-7■■□□□ 12.3
LIN28BQ6ZN17 MYL12A-201ENST00000217652 1229 ntAPPRIS P1 TSL 1 (best) BASIC11.49□□□□□ -0.571e-7■■□□□ 12.3
LIN28BQ6ZN17 ACSM3-214ENST00000569141 405 ntTSL 53.39□□□□□ -1.871e-7■■□□□ 12.3
LIN28BQ6ZN17 SPTAN1-226ENST00000631315 581 ntTSL 214.58□□□□□ -0.082e-8■■□□□ 12.3
LIN28BQ6ZN17 SPTAN1-204ENST00000461855 857 ntTSL 211.41□□□□□ -0.582e-8■■□□□ 12.3
LIN28BQ6ZN17 MMS19-206ENST00000434392 882 ntTSL 518.2■□□□□ 0.52e-7■■□□□ 12.3
LIN28BQ6ZN17 MMS19-201ENST00000327238 3165 ntAPPRIS ALT2 TSL 5 BASIC11.62□□□□□ -0.552e-7■■□□□ 12.3
LIN28BQ6ZN17 MMS19-204ENST00000415383 3401 ntTSL 1 (best)11.44□□□□□ -0.582e-7■■□□□ 12.3
LIN28BQ6ZN17 MMS19-209ENST00000438925 3797 ntAPPRIS P3 TSL 1 (best) BASIC11.03□□□□□ -0.642e-7■■□□□ 12.3
LIN28BQ6ZN17 MMS19-207ENST00000434538 2164 ntTSL 210.81□□□□□ -0.682e-7■■□□□ 12.3
LIN28BQ6ZN17 MMS19-203ENST00000370782 3532 ntAPPRIS P3 TSL 1 (best) BASIC10.3□□□□□ -0.762e-7■■□□□ 12.3
LIN28BQ6ZN17 MMS19-202ENST00000355839 3555 ntAPPRIS ALT2 TSL 1 (best) BASIC9.95□□□□□ -0.822e-7■■□□□ 12.3
LIN28BQ6ZN17 PDCD6-206ENST00000507528 1088 ntAPPRIS ALT1 TSL 1 (best) BASIC22.23■■□□□ 1.152e-9■■□□□ 12.3
LIN28BQ6ZN17 PDCD6-214ENST00000628729 1073 ntTSL 5 BASIC19.07■□□□□ 0.642e-9■■□□□ 12.3
LIN28BQ6ZN17 OCIAD1-204ENST00000425583 1915 ntTSL 3 BASIC18.98■□□□□ 0.631e-7■■□□□ 12.3
LIN28BQ6ZN17 OCIAD1-213ENST00000508293 1423 ntAPPRIS P1 TSL 5 BASIC18.49■□□□□ 0.551e-7■■□□□ 12.3
LIN28BQ6ZN17 AHRR-209ENST00000512529 1912 ntTSL 5 BASIC18.39■□□□□ 0.532e-9■■□□□ 12.3
LIN28BQ6ZN17 OCIAD1-202ENST00000381473 1594 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.481e-7■■□□□ 12.3
LIN28BQ6ZN17 PDCD6-212ENST00000614778 1050 ntTSL 2 BASIC17.7■□□□□ 0.422e-9■■□□□ 12.3
LIN28BQ6ZN17 KHSRP-207ENST00000595548 801 ntTSL 217.68■□□□□ 0.422e-9■■□□□ 12.3
LIN28BQ6ZN17 PDCD6-202ENST00000505221 672 ntTSL 3 BASIC17.3■□□□□ 0.362e-9■■□□□ 12.3
LIN28BQ6ZN17 AHRR-203ENST00000505113 2173 ntAPPRIS ALT2 TSL 1 (best) BASIC17■□□□□ 0.312e-9■■□□□ 12.3
LIN28BQ6ZN17 AHRR-201ENST00000316418 5661 ntAPPRIS P3 TSL 1 (best) BASIC15.48■□□□□ 0.072e-9■■□□□ 12.3
LIN28BQ6ZN17 PDCD6-204ENST00000506909 458 ntTSL 315.18■□□□□ 0.022e-9■■□□□ 12.3
LIN28BQ6ZN17 PDCD6-213ENST00000618970 931 ntTSL 3 BASIC14.85□□□□□ -0.032e-9■■□□□ 12.3
LIN28BQ6ZN17 PDCD6-201ENST00000264933 1135 ntAPPRIS P3 TSL 1 (best) BASIC14.73□□□□□ -0.052e-9■■□□□ 12.3
LIN28BQ6ZN17 OCIAD1-226ENST00000513391 1288 ntAPPRIS P1 TSL 5 BASIC13.67□□□□□ -0.221e-7■■□□□ 12.3
LIN28BQ6ZN17 GAPVD1-205ENST00000394084 3190 ntTSL 1 (best) BASIC13.48□□□□□ -0.252e-9■■□□□ 12.3
LIN28BQ6ZN17 OCIAD1-205ENST00000444354 1756 ntTSL 3 BASIC12.1□□□□□ -0.471e-7■■□□□ 12.3
LIN28BQ6ZN17 OCIAD1-201ENST00000264312 1414 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.491e-7■■□□□ 12.3
LIN28BQ6ZN17 GAPVD1-220ENST00000497580 3720 ntTSL 211.87□□□□□ -0.512e-9■■□□□ 12.3
LIN28BQ6ZN17 OCIAD1-203ENST00000396448 1306 ntTSL 1 (best) BASIC11.63□□□□□ -0.551e-7■■□□□ 12.3
LIN28BQ6ZN17 PDCD6-210ENST00000513582 3500 ntTSL 210.39□□□□□ -0.752e-9■■□□□ 12.3
LIN28BQ6ZN17 PDCD6-209ENST00000512466 3763 ntTSL 210.17□□□□□ -0.782e-9■■□□□ 12.3
LIN28BQ6ZN17 PDCD6-208ENST00000511482 878 ntTSL 510.04□□□□□ -0.82e-9■■□□□ 12.3
LIN28BQ6ZN17 OCIAD1-206ENST00000502972 1916 ntTSL 29.39□□□□□ -0.911e-7■■□□□ 12.3
LIN28BQ6ZN17 GAPVD1-209ENST00000436712 2490 ntTSL 57.42□□□□□ -1.222e-9■■□□□ 12.3
LIN28BQ6ZN17 GAPVD1-201ENST00000265956 2667 ntTSL 5 BASIC7.38□□□□□ -1.232e-9■■□□□ 12.3
LIN28BQ6ZN17 GAPVD1-212ENST00000467750 3163 ntTSL 57.22□□□□□ -1.252e-9■■□□□ 12.3
LIN28BQ6ZN17 GAPVD1-208ENST00000431329 2512 ntTSL 27.03□□□□□ -1.282e-9■■□□□ 12.3
LIN28BQ6ZN17 OCIAD1-216ENST00000509122 1204 ntTSL 5 BASIC6.88□□□□□ -1.311e-7■■□□□ 12.3
LIN28BQ6ZN17 CD99-212ENST00000624481 1089 ntAPPRIS ALT2 TSL 2 BASIC23.42■■□□□ 1.343e-12■■□□□ 12.3
LIN28BQ6ZN17 CD99-208ENST00000482405 842 ntTSL 223.42■■□□□ 1.343e-12■■□□□ 12.3
LIN28BQ6ZN17 CD99-203ENST00000381184 918 ntAPPRIS ALT2 TSL 5 BASIC22.79■■□□□ 1.243e-12■■□□□ 12.3
LIN28BQ6ZN17 CD99-210ENST00000611428 1243 ntAPPRIS ALT2 TSL 1 (best) BASIC22.6■■□□□ 1.213e-12■■□□□ 12.3
LIN28BQ6ZN17 CD99-207ENST00000482293 466 ntTSL 222.51■■□□□ 1.193e-12■■□□□ 12.3
LIN28BQ6ZN17 CD99-206ENST00000449611 604 ntAPPRIS ALT2 TSL 520.79■□□□□ 0.923e-12■■□□□ 12.3
LIN28BQ6ZN17 CD99-205ENST00000381192 1245 ntAPPRIS P3 TSL 1 (best) BASIC20.34■□□□□ 0.853e-12■■□□□ 12.3
LIN28BQ6ZN17 CD99-204ENST00000381187 892 ntAPPRIS ALT2 TSL 2 BASIC19.3■□□□□ 0.683e-12■■□□□ 12.3
LIN28BQ6ZN17 CD99-211ENST00000623253 573 ntTSL 1 (best)18.82■□□□□ 0.63e-12■■□□□ 12.3
LIN28BQ6ZN17 PLD2-207ENST00000574268 596 ntTSL 517.47■□□□□ 0.391e-6■■□□□ 12.3
LIN28BQ6ZN17 FLNA-213ENST00000466325 828 ntTSL 216.9■□□□□ 0.31e-6■■□□□ 12.3
LIN28BQ6ZN17 FLNA-205ENST00000415241 704 ntTSL 516.81■□□□□ 0.281e-6■■□□□ 12.3
LIN28BQ6ZN17 VASN-201ENST00000304735 2806 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.281e-6■■□□□ 12.3
LIN28BQ6ZN17 SDHA-210ENST00000509420 580 ntTSL 215.32■□□□□ 0.043e-12■■□□□ 12.3
LIN28BQ6ZN17 PLD2-201ENST00000263088 3503 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.161e-6■■□□□ 12.3
LIN28BQ6ZN17 PLD2-210ENST00000575316 544 ntTSL 413.69□□□□□ -0.221e-6■■□□□ 12.3
LIN28BQ6ZN17 ACTN1-214ENST00000555075 828 ntTSL 313.28□□□□□ -0.281e-6■■□□□ 12.3
LIN28BQ6ZN17 PLD2-209ENST00000575246 2278 ntTSL 212.73□□□□□ -0.371e-6■■□□□ 12.3
LIN28BQ6ZN17 CD99-201ENST00000381177 756 ntTSL 210.16□□□□□ -0.783e-12■■□□□ 12.3
LIN28BQ6ZN17 ACTN1-216ENST00000556083 4674 ntTSL 1 (best)10.05□□□□□ -0.81e-6■■□□□ 12.3
LIN28BQ6ZN17 CHD8-214ENST00000557727 1146 nt9.95□□□□□ -0.821e-6■■□□□ 12.3
LIN28BQ6ZN17 PLD2-205ENST00000572940 3391 ntTSL 1 (best) BASIC9.68□□□□□ -0.861e-6■■□□□ 12.3
LIN28BQ6ZN17 CTNNA1-216ENST00000519489 358 ntTSL 28.47□□□□□ -1.051e-6■■□□□ 12.3
LIN28BQ6ZN17 IDH2-202ENST00000540499 1453 ntTSL 2 BASIC24.45■■□□□ 1.51e-10■■□□□ 12.3
LIN28BQ6ZN17 IDH2-203ENST00000559482 1278 ntTSL 5 BASIC24.03■■□□□ 1.441e-10■■□□□ 12.3
LIN28BQ6ZN17 IDH2-204ENST00000560061 1449 ntTSL 219.25■□□□□ 0.671e-10■■□□□ 12.3
LIN28BQ6ZN17 IDH2-201ENST00000330062 2694 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.051e-10■■□□□ 12.3
LIN28BQ6ZN17 ZC3H18-205ENST00000564341 387 ntTSL 515.95■□□□□ 0.142e-7■■□□□ 12.3
LIN28BQ6ZN17 ZC3H18-206ENST00000565583 1068 ntTSL 214.94□□□□□ -0.022e-7■■□□□ 12.3
LIN28BQ6ZN17 ZC3H18-207ENST00000566317 628 ntTSL 214.56□□□□□ -0.082e-7■■□□□ 12.3
LIN28BQ6ZN17 ZC3H18-209ENST00000566660 583 ntTSL 214.56□□□□□ -0.082e-7■■□□□ 12.3
LIN28BQ6ZN17 ZC3H18-201ENST00000301011 3729 ntAPPRIS P2 TSL 1 (best) BASIC13.36□□□□□ -0.272e-7■■□□□ 12.3
LIN28BQ6ZN17 ZC3H18-208ENST00000566496 1949 ntTSL 213.33□□□□□ -0.282e-7■■□□□ 12.3
LIN28BQ6ZN17 ZC3H18-202ENST00000452588 3211 ntTSL 2 BASIC12.51□□□□□ -0.412e-7■■□□□ 12.3
LIN28BQ6ZN17 F5-202ENST00000367797 7024 ntAPPRIS P2 TSL 1 (best) BASIC8.97□□□□□ -0.971e-6■■□□□ 12.3
LIN28BQ6ZN17 F5-201ENST00000367796 7039 ntAPPRIS ALT2 TSL 5 BASIC8.63□□□□□ -1.031e-6■■□□□ 12.3
LIN28BQ6ZN17 PABPC1-205ENST00000518196 631 ntTSL 314.17□□□□□ -0.145e-24■■□□□ 12.3
LIN28BQ6ZN17 ANO10-206ENST00000427171 746 ntTSL 518.87■□□□□ 0.611e-6■■□□□ 12.3
LIN28BQ6ZN17 ANO10-207ENST00000428472 592 ntTSL 414.09□□□□□ -0.151e-6■■□□□ 12.3
LIN28BQ6ZN17 AC104109.3-201ENST00000519718 483 ntAPPRIS P1 TSL 5 BASIC30.32■■■□□ 2.443e-9■■□□□ 12.3
LIN28BQ6ZN17 SKP1-206ENST00000519321 692 ntTSL 324.99■■□□□ 1.593e-9■■□□□ 12.3
LIN28BQ6ZN17 SKP1-208ENST00000521216 899 ntAPPRIS ALT1 TSL 5 BASIC5.07□□□□□ -1.63e-9■■□□□ 12.3
LIN28BQ6ZN17 SKP1-207ENST00000520417 610 ntTSL 34.59□□□□□ -1.673e-9■■□□□ 12.3
Retrieved 100 of 21,972 protein–RNA pairs in 401.5 ms