RNA–Protein interactions for RNA: ENST00000436712.2

GAPVD1-209, Transcript of GTPase activating protein and VPS9 domains 1, humanhuman

TSL 5

Gene GAPVD1, Length 2,490 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GAPVD1-209ENST00000436712 NISCHQ9Y2I1 1504 aa15.86■□□□□ 0.13
GAPVD1-209ENST00000436712 PELP1Q8IZL8 1130 aaKnown RBP14.33□□□□□ -0.12
GAPVD1-209ENST00000436712 MYT1Q01538 1121 aa14.08□□□□□ -0.15
GAPVD1-209ENST00000436712 CCDC180Q9P1Z9 1646 aa13.8□□□□□ -0.2
GAPVD1-209ENST00000436712 TTBK1Q5TCY1 1321 aaPredicted RBP13.53□□□□□ -0.24
GAPVD1-209ENST00000436712 HRCP23327 699 aa13.42□□□□□ -0.26
GAPVD1-209ENST00000436712 DCAF8L2P0C7V8 631 aa13.37□□□□□ -0.27
GAPVD1-209ENST00000436712 ABCC9O60706 1549 aa13.32□□□□□ -0.28
GAPVD1-209ENST00000436712 ZCCHC6Q5VYS8 1495 aaKnown RBP13.31□□□□□ -0.28
GAPVD1-209ENST00000436712 SHROOM4Q9ULL8 1493 aa13.16□□□□□ -0.3
GAPVD1-209ENST00000436712 SCAF1Q9H7N4 1312 aaKnown RBP13.11□□□□□ -0.31
GAPVD1-209ENST00000436712 PRKCSHP14314 528 aaPredicted RBP13.06□□□□□ -0.32
GAPVD1-209ENST00000436712 DCAF1Q9Y4B6 1507 aa12.99□□□□□ -0.33
GAPVD1-209ENST00000436712 PPARGC1BQ86YN6 1023 aaKnown RBP12.96□□□□□ -0.34
GAPVD1-209ENST00000436712 SCRIBQ14160 1630 aa12.88□□□□□ -0.35
GAPVD1-209ENST00000436712 BCL11AQ9H165 835 aa12.87□□□□□ -0.35
GAPVD1-209ENST00000436712 NACADO15069 1562 aa12.87□□□□□ -0.35
GAPVD1-209ENST00000436712 ERICH6Q7L0X2 663 aa12.85□□□□□ -0.35
GAPVD1-209ENST00000436712 RB1CC1Q8TDY2 1594 aa12.82□□□□□ -0.36
GAPVD1-209ENST00000436712 MYO15BQ96JP2 1530 aa12.82□□□□□ -0.36
GAPVD1-209ENST00000436712 APLP2Q06481 763 aa12.79□□□□□ -0.36
GAPVD1-209ENST00000436712 FAM9AQ8IZU1 332 aaPredicted RBP12.71□□□□□ -0.37
GAPVD1-209ENST00000436712 UNC13AQ9UPW8 1703 aa12.65□□□□□ -0.38
GAPVD1-209ENST00000436712 PCGF6Q9BYE7 350 aa12.63□□□□□ -0.39
GAPVD1-209ENST00000436712 SUPT5HO00267 1087 aaKnown RBP12.63□□□□□ -0.39
GAPVD1-209ENST00000436712 CENPBP07199 599 aaPredicted RBP12.62□□□□□ -0.39
GAPVD1-209ENST00000436712 PABPN1Q86U42 306 aaKnown RBP eCLIP12.59□□□□□ -0.39
GAPVD1-209ENST00000436712 ACIN1Q9UKV3 1341 aaKnown RBP12.58□□□□□ -0.4
GAPVD1-209ENST00000436712 BICRAQ9NZM4 1560 aa12.47□□□□□ -0.41
GAPVD1-209ENST00000436712 GTF3C3Q9Y5Q9 886 aa12.46□□□□□ -0.41
GAPVD1-209ENST00000436712 SLC24A1O60721 1099 aa12.46□□□□□ -0.42
GAPVD1-209ENST00000436712 NEUROD1Q13562 356 aa12.44□□□□□ -0.42
GAPVD1-209ENST00000436712 CECR2Q9BXF3 1484 aa12.43□□□□□ -0.42
GAPVD1-209ENST00000436712 ZEB1P37275 1124 aaPredicted RBP12.42□□□□□ -0.42
GAPVD1-209ENST00000436712 ANP32EQ9BTT0 268 aa12.35□□□□□ -0.43
GAPVD1-209ENST00000436712 MROH2BQ7Z745 1585 aa12.32□□□□□ -0.44
GAPVD1-209ENST00000436712 RSF1Q96T23 1441 aaPredicted RBP12.31□□□□□ -0.44
GAPVD1-209ENST00000436712 WIZO95785 1651 aa12.25□□□□□ -0.45
GAPVD1-209ENST00000436712 CHIC1Q5VXU3 224 aa12.25□□□□□ -0.45
GAPVD1-209ENST00000436712 BAZ1AQ9NRL2 1556 aaPredicted RBP12.24□□□□□ -0.45
GAPVD1-209ENST00000436712 SMARCA4P51532 1647 aa12.24□□□□□ -0.45
GAPVD1-209ENST00000436712 CSRNP3Q8WYN3 585 aa12.18□□□□□ -0.46
GAPVD1-209ENST00000436712 TRIM26Q12899 539 aaPredicted RBP12.11□□□□□ -0.47
GAPVD1-209ENST00000436712 EIF4G1Q04637 1599 aaKnown RBP12.11□□□□□ -0.47
GAPVD1-209ENST00000436712 DAXXQ9UER7 740 aaPredicted RBP12.09□□□□□ -0.47
GAPVD1-209ENST00000436712 ATAD2BQ9ULI0 1458 aa12.04□□□□□ -0.48
GAPVD1-209ENST00000436712 TOP2AP11388 1531 aaKnown RBP12.03□□□□□ -0.48
GAPVD1-209ENST00000436712 EIF5BO60841 1220 aaKnown RBP12.01□□□□□ -0.49
GAPVD1-209ENST00000436712 BAZ1BQ9UIG0 1483 aaKnown RBP12□□□□□ -0.49
GAPVD1-209ENST00000436712 SMARCA2P51531 1590 aa11.99□□□□□ -0.49
GAPVD1-209ENST00000436712 PEG3Q9GZU2 1588 aa11.99□□□□□ -0.49
GAPVD1-209ENST00000436712 CC2D2AQ9P2K1 1620 aa11.98□□□□□ -0.49
GAPVD1-209ENST00000436712 UBE2Q2Q8WVN8 375 aa11.96□□□□□ -0.49
GAPVD1-209ENST00000436712 CCDC88BA6NC98 1476 aa11.95□□□□□ -0.5
GAPVD1-209ENST00000436712 LOC105371045A0A1W2PR82 267 aa11.94□□□□□ -0.5
GAPVD1-209ENST00000436712 ANO8Q9HCE9 1232 aaPredicted RBP11.93□□□□□ -0.5
GAPVD1-209ENST00000436712 NCAPD3P42695 1498 aa11.88□□□□□ -0.51
GAPVD1-209ENST00000436712 DIEXFQ68CQ4 756 aaKnown RBP11.87□□□□□ -0.51
GAPVD1-209ENST00000436712 TSHZ2Q9NRE2 1034 aa11.87□□□□□ -0.51
GAPVD1-209ENST00000436712 HMGXB3Q12766 1538 aa11.87□□□□□ -0.51
GAPVD1-209ENST00000436712 DNAJC5BQ9UF47 199 aa11.84□□□□□ -0.51
GAPVD1-209ENST00000436712 CLSPNQ9HAW4 1339 aa11.81□□□□□ -0.52
GAPVD1-209ENST00000436712 ABCC8Q09428 1581 aa11.78□□□□□ -0.52
GAPVD1-209ENST00000436712 TRIM41Q8WV44 630 aa11.75□□□□□ -0.53
GAPVD1-209ENST00000436712 ERICH6BQ5W0A0 696 aa11.71□□□□□ -0.53
GAPVD1-209ENST00000436712 MYT1LQ9UL68 1186 aa11.69□□□□□ -0.54
GAPVD1-209ENST00000436712 SUPT16HQ9Y5B9 1047 aaKnown RBP11.69□□□□□ -0.54
GAPVD1-209ENST00000436712 PLEKHG5O94827 1062 aa11.69□□□□□ -0.54
GAPVD1-209ENST00000436712 SALL2Q9Y467 1007 aaPredicted RBP11.69□□□□□ -0.54
GAPVD1-209ENST00000436712 NESP48681 1621 aa11.67□□□□□ -0.54
GAPVD1-209ENST00000436712 YTHDC1Q96MU7 727 aaKnown RBP11.66□□□□□ -0.54
GAPVD1-209ENST00000436712 PKNOX2Q96KN3 472 aa11.65□□□□□ -0.54
GAPVD1-209ENST00000436712 EHMT2Q96KQ7 1210 aa11.64□□□□□ -0.55
GAPVD1-209ENST00000436712 CFTRP13569 1480 aa11.63□□□□□ -0.55
GAPVD1-209ENST00000436712 CADPSQ9ULU8 1353 aa11.62□□□□□ -0.55
GAPVD1-209ENST00000436712 PODXL2Q9NZ53 605 aa11.61□□□□□ -0.55
GAPVD1-209ENST00000436712 WRNQ14191 1432 aaPredicted RBP eCLIP11.6□□□□□ -0.557e-6■■■■■ 39.7
GAPVD1-209ENST00000436712 SYNJ1O43426 1573 aa11.6□□□□□ -0.55
GAPVD1-209ENST00000436712 CCDC136Q96JN2 1154 aa11.59□□□□□ -0.55
GAPVD1-209ENST00000436712 PRDM2Q13029 1718 aa11.58□□□□□ -0.56
GAPVD1-209ENST00000436712 AEBP2Q6ZN18 517 aaPredicted RBP11.56□□□□□ -0.56
GAPVD1-209ENST00000436712 FANCD2Q9BXW9 1451 aa11.54□□□□□ -0.56
GAPVD1-209ENST00000436712 DEKP35659 375 aaKnown RBP11.54□□□□□ -0.56
GAPVD1-209ENST00000436712 CUX1P39880 1505 aa11.52□□□□□ -0.57
GAPVD1-209ENST00000436712 LAMC3Q9Y6N6 1575 aa11.51□□□□□ -0.57
GAPVD1-209ENST00000436712 RBM19Q9Y4C8 960 aaKnown RBP11.51□□□□□ -0.57
GAPVD1-209ENST00000436712 SOGA1O94964 1423 aa11.5□□□□□ -0.57
GAPVD1-209ENST00000436712 KIF21AQ7Z4S6 1674 aa11.5□□□□□ -0.57
GAPVD1-209ENST00000436712 RUSC2Q8N2Y8 1516 aa11.49□□□□□ -0.57
GAPVD1-209ENST00000436712 TOP2BQ02880 1626 aa11.48□□□□□ -0.57
GAPVD1-209ENST00000436712 MSH5O43196 834 aa11.48□□□□□ -0.57
GAPVD1-209ENST00000436712 ZNF316A6NFI3 1004 aaPredicted RBP11.47□□□□□ -0.57
GAPVD1-209ENST00000436712 CEP164Q9UPV0 1460 aa11.47□□□□□ -0.57
GAPVD1-209ENST00000436712 BIVM-ERCC5R4GMW8 1640 aa11.46□□□□□ -0.57
GAPVD1-209ENST00000436712 MIER1Q8N108 512 aa11.46□□□□□ -0.57
GAPVD1-209ENST00000436712 CCER1Q8TC90 406 aaPredicted RBP11.45□□□□□ -0.58
GAPVD1-209ENST00000436712 PDS5BQ9NTI5 1447 aa11.44□□□□□ -0.58
GAPVD1-209ENST00000436712 URB2Q14146 1524 aaKnown RBP11.41□□□□□ -0.58
GAPVD1-209ENST00000436712 FGD5Q6ZNL6 1462 aa11.41□□□□□ -0.58
GAPVD1-209ENST00000436712 ZBTB4Q9P1Z0 1013 aaPredicted RBP11.41□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 12.8 ms