RNA–Protein interactions for RNA: ENST00000557727.1

CHD8-214, Transcript of chromodomain helicase DNA binding protein 8, humanhuman

Gene CHD8, Length 1,146 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD8-214ENST00000557727 AEBP2Q6ZN18 517 aaPredicted RBP27.07■■□□□ 1.92
CHD8-214ENST00000557727 CHIC1Q5VXU3 224 aa25.69■■□□□ 1.7
CHD8-214ENST00000557727 SENP3Q9H4L4 574 aaPredicted RBP23.15■■□□□ 1.3
CHD8-214ENST00000557727 PHF23Q9BUL5 403 aaPredicted RBP22.83■■□□□ 1.25
CHD8-214ENST00000557727 NISCHQ9Y2I1 1504 aa21.9■■□□□ 1.1
CHD8-214ENST00000557727 FOXD1Q16676 465 aa21.55■■□□□ 1.04
CHD8-214ENST00000557727 PLPPR3Q6T4P5 718 aa20.52■□□□□ 0.88
CHD8-214ENST00000557727 MSH5O43196 834 aa20.24■□□□□ 0.83
CHD8-214ENST00000557727 PIAS4Q8N2W9 510 aaPredicted RBP20.11■□□□□ 0.81
CHD8-214ENST00000557727 PPP6R1Q9UPN7 881 aa20.09■□□□□ 0.81
CHD8-214ENST00000557727 ADRA2BP18089 450 aa20.01■□□□□ 0.79
CHD8-214ENST00000557727 POTEDQ86YR6 584 aa19.81■□□□□ 0.76
CHD8-214ENST00000557727 CCDC180Q9P1Z9 1646 aa19.44■□□□□ 0.7
CHD8-214ENST00000557727 ABCC9O60706 1549 aa18.74■□□□□ 0.59
CHD8-214ENST00000557727 SCAF1Q9H7N4 1312 aaKnown RBP18.4■□□□□ 0.54
CHD8-214ENST00000557727 MAPK8IP2Q13387 824 aaPredicted RBP18.39■□□□□ 0.53
CHD8-214ENST00000557727 DMRT2Q9Y5R5 561 aa18.35■□□□□ 0.53
CHD8-214ENST00000557727 ZCCHC6Q5VYS8 1495 aaKnown RBP18.31■□□□□ 0.52
CHD8-214ENST00000557727 NACADO15069 1562 aa18.17■□□□□ 0.5
CHD8-214ENST00000557727 MYO15BQ96JP2 1530 aa18.16■□□□□ 0.5
CHD8-214ENST00000557727 DCAF1Q9Y4B6 1507 aa18.15■□□□□ 0.5
CHD8-214ENST00000557727 RB1CC1Q8TDY2 1594 aa18.13■□□□□ 0.49
CHD8-214ENST00000557727 DCAF8L2P0C7V8 631 aa17.99■□□□□ 0.47
CHD8-214ENST00000557727 PPP4R3CPQ6ZMV5 832 aa17.94■□□□□ 0.46
CHD8-214ENST00000557727 UNC13AQ9UPW8 1703 aa17.89■□□□□ 0.46
CHD8-214ENST00000557727 SCRIBQ14160 1630 aa17.7■□□□□ 0.42
CHD8-214ENST00000557727 BICRAQ9NZM4 1560 aa17.69■□□□□ 0.42
CHD8-214ENST00000557727 HOXD11P31277 338 aaPredicted RBP17.67■□□□□ 0.42
CHD8-214ENST00000557727 CNKSR2Q8WXI2 1034 aa17.65■□□□□ 0.42
CHD8-214ENST00000557727 DCAF8L1A6NGE4 600 aa17.52■□□□□ 0.4
CHD8-214ENST00000557727 RNF216Q9NWF9 866 aaPredicted RBP17.52■□□□□ 0.4
CHD8-214ENST00000557727 PABPN1Q86U42 306 aaKnown RBP eCLIP17.49■□□□□ 0.39
CHD8-214ENST00000557727 SHROOM4Q9ULL8 1493 aa17.43■□□□□ 0.38
CHD8-214ENST00000557727 CACNB1Q02641 598 aaPredicted RBP17.36■□□□□ 0.37
CHD8-214ENST00000557727 NCBP3Q53F19 620 aaKnown RBP17.28■□□□□ 0.36
CHD8-214ENST00000557727 RNF39Q9H2S5 420 aa17.25■□□□□ 0.35
CHD8-214ENST00000557727 DNAJC5BQ9UF47 199 aa17.15■□□□□ 0.34
CHD8-214ENST00000557727 EIF4G1Q04637 1599 aaKnown RBP17.14■□□□□ 0.33
CHD8-214ENST00000557727 CECR2Q9BXF3 1484 aa17.05■□□□□ 0.32
CHD8-214ENST00000557727 C1QBPQ07021 282 aaKnown RBP17.03■□□□□ 0.32
CHD8-214ENST00000557727 CC2D2AQ9P2K1 1620 aa17.03■□□□□ 0.32
CHD8-214ENST00000557727 NPM3O75607 178 aaKnown RBP16.99■□□□□ 0.31
CHD8-214ENST00000557727 SMARCA4P51532 1647 aa16.98■□□□□ 0.31
CHD8-214ENST00000557727 BAZ1AQ9NRL2 1556 aaPredicted RBP16.94■□□□□ 0.3
CHD8-214ENST00000557727 MROH2BQ7Z745 1585 aa16.89■□□□□ 0.3
CHD8-214ENST00000557727 PEG3Q9GZU2 1588 aa16.85■□□□□ 0.29
CHD8-214ENST00000557727 ATAD2BQ9ULI0 1458 aa16.8■□□□□ 0.28
CHD8-214ENST00000557727 GRWD1Q9BQ67 446 aaKnown RBP eCLIP16.79■□□□□ 0.28
CHD8-214ENST00000557727 SMARCA2P51531 1590 aa16.77■□□□□ 0.27
CHD8-214ENST00000557727 NCAPD3P42695 1498 aa16.76■□□□□ 0.27
CHD8-214ENST00000557727 WIZO95785 1651 aa16.75■□□□□ 0.27
CHD8-214ENST00000557727 RSF1Q96T23 1441 aaPredicted RBP16.74■□□□□ 0.27
CHD8-214ENST00000557727 HMGXB3Q12766 1538 aa16.72■□□□□ 0.27
CHD8-214ENST00000557727 BAZ1BQ9UIG0 1483 aaKnown RBP16.63■□□□□ 0.25
CHD8-214ENST00000557727 KCNA4P22459 653 aa16.58■□□□□ 0.24
CHD8-214ENST00000557727 TOP2AP11388 1531 aaKnown RBP16.55■□□□□ 0.24
CHD8-214ENST00000557727 U3KPZ7 1027 aaPredicted RBP16.43■□□□□ 0.22
CHD8-214ENST00000557727 CCDC88BA6NC98 1476 aa16.33■□□□□ 0.2
CHD8-214ENST00000557727 NESP48681 1621 aa16.33■□□□□ 0.2
CHD8-214ENST00000557727 SUPT5HO00267 1087 aaKnown RBP16.3■□□□□ 0.2
CHD8-214ENST00000557727 LAMC3Q9Y6N6 1575 aa16.29■□□□□ 0.2
CHD8-214ENST00000557727 SLC4A2P04920 1241 aa16.24■□□□□ 0.19
CHD8-214ENST00000557727 CADPSQ9ULU8 1353 aa16.24■□□□□ 0.19
CHD8-214ENST00000557727 CFTRP13569 1480 aa16.23■□□□□ 0.19
CHD8-214ENST00000557727 PRDM2Q13029 1718 aa16.23■□□□□ 0.19
CHD8-214ENST00000557727 KIF21AQ7Z4S6 1674 aa16.19■□□□□ 0.18
CHD8-214ENST00000557727 SPINK5Q9NQ38 1064 aaPredicted RBP16.18■□□□□ 0.18
CHD8-214ENST00000557727 CAPN15O75808 1086 aa16.17■□□□□ 0.18
CHD8-214ENST00000557727 DSG3P32926 999 aa16.12■□□□□ 0.17
CHD8-214ENST00000557727 THOC2Q8NI27 1593 aaKnown RBP16.09■□□□□ 0.17
CHD8-214ENST00000557727 PDS5BQ9NTI5 1447 aa16.09■□□□□ 0.17
CHD8-214ENST00000557727 ERCC6Q03468 1493 aa16.07■□□□□ 0.16
CHD8-214ENST00000557727 FANCD2Q9BXW9 1451 aa16.07■□□□□ 0.16
CHD8-214ENST00000557727 APLP2Q06481 763 aa16.04■□□□□ 0.16
CHD8-214ENST00000557727 CEP164Q9UPV0 1460 aa16.02■□□□□ 0.15
CHD8-214ENST00000557727 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.01■□□□□ 0.15
CHD8-214ENST00000557727 HNRNPUL2Q1KMD3 747 aaKnown RBP16.01■□□□□ 0.15
CHD8-214ENST00000557727 MRC2Q9UBG0 1479 aa15.97■□□□□ 0.15
CHD8-214ENST00000557727 WDR62O43379 1518 aa15.97■□□□□ 0.15
CHD8-214ENST00000557727 URB2Q14146 1524 aaKnown RBP15.95■□□□□ 0.14
CHD8-214ENST00000557727 ZNF219Q9P2Y4 722 aaPredicted RBP15.92■□□□□ 0.14
CHD8-214ENST00000557727 CUX2O14529 1486 aa15.91■□□□□ 0.14
CHD8-214ENST00000557727 TRHP20396 242 aaPredicted RBP15.89■□□□□ 0.13
CHD8-214ENST00000557727 SAMD1Q6SPF0 538 aaPredicted RBP15.89■□□□□ 0.13
CHD8-214ENST00000557727 TOPBP1Q92547 1522 aa15.87■□□□□ 0.13
CHD8-214ENST00000557727 DNMBPQ6XZF7 1577 aa15.87■□□□□ 0.13
CHD8-214ENST00000557727 CUX1P39880 1505 aa15.84■□□□□ 0.13
CHD8-214ENST00000557727 ABCC8Q09428 1581 aa15.81■□□□□ 0.12
CHD8-214ENST00000557727 BIVM-ERCC5R4GMW8 1640 aa15.79■□□□□ 0.12
CHD8-214ENST00000557727 SYNJ1O43426 1573 aa15.78■□□□□ 0.12
CHD8-214ENST00000557727 ABCB7O75027 752 aa15.75■□□□□ 0.11
CHD8-214ENST00000557727 TOP2BQ02880 1626 aa15.75■□□□□ 0.11
CHD8-214ENST00000557727 POLA1P09884 1462 aaPredicted RBP15.74■□□□□ 0.11
CHD8-214ENST00000557727 TARBP1Q13395 1621 aaKnown RBP15.74■□□□□ 0.11
CHD8-214ENST00000557727 MYCNP04198 464 aaPredicted RBP15.73■□□□□ 0.11
CHD8-214ENST00000557727 WRNQ14191 1432 aaPredicted RBP eCLIP15.73■□□□□ 0.11
CHD8-214ENST00000557727 FGD5Q6ZNL6 1462 aa15.71■□□□□ 0.11
CHD8-214ENST00000557727 WDR97A6NE52 1622 aa15.7■□□□□ 0.1
CHD8-214ENST00000557727 IFT140Q96RY7 1462 aa15.67■□□□□ 0.1
CHD8-214ENST00000557727 SLC4A1APQ9BWU0 796 aaKnown RBP15.66■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 72.6 ms