RNA–Protein interactions for RNA: ENST00000519321.5

SKP1-206, Transcript of S-phase kinase associated protein 1, humanhuman

TSL 3

Gene SKP1, Length 692 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKP1-206ENST00000519321 NISCHQ9Y2I1 1504 aa54.31■■■■■ 6.28
SKP1-206ENST00000519321 CCDC180Q9P1Z9 1646 aa48.21■■■■■ 5.31
SKP1-206ENST00000519321 ABCC9O60706 1549 aa46.83■■■■■ 5.09
SKP1-206ENST00000519321 ZCCHC6Q5VYS8 1495 aaKnown RBP45.29■■■■■ 4.84
SKP1-206ENST00000519321 NACADO15069 1562 aa45.28■■■■■ 4.84
SKP1-206ENST00000519321 RB1CC1Q8TDY2 1594 aa45.25■■■■■ 4.83
SKP1-206ENST00000519321 DCAF8L2P0C7V8 631 aa45.25■■■■■ 4.83
SKP1-206ENST00000519321 MYO15BQ96JP2 1530 aa45.11■■■■■ 4.81
SKP1-206ENST00000519321 DCAF1Q9Y4B6 1507 aa45.01■■■■■ 4.8
SKP1-206ENST00000519321 UNC13AQ9UPW8 1703 aa44.13■■■■■ 4.66
SKP1-206ENST00000519321 SCRIBQ14160 1630 aa43.92■■■■■ 4.62
SKP1-206ENST00000519321 PABPN1Q86U42 306 aaKnown RBP eCLIP43.78■■■■■ 4.6
SKP1-206ENST00000519321 BICRAQ9NZM4 1560 aa43.78■■■■■ 4.6
SKP1-206ENST00000519321 SHROOM4Q9ULL8 1493 aa43.49■■■■■ 4.55
SKP1-206ENST00000519321 DNAJC5BQ9UF47 199 aa42.66■■■■■ 4.42
SKP1-206ENST00000519321 EIF4G1Q04637 1599 aaKnown RBP42.65■■■■■ 4.42
SKP1-206ENST00000519321 CC2D2AQ9P2K1 1620 aa42.39■■■■■ 4.38
SKP1-206ENST00000519321 CECR2Q9BXF3 1484 aa42.22■■■■■ 4.35
SKP1-206ENST00000519321 BAZ1AQ9NRL2 1556 aaPredicted RBP42.1■■■■■ 4.33
SKP1-206ENST00000519321 SMARCA4P51532 1647 aa42.08■■■■■ 4.33
SKP1-206ENST00000519321 MROH2BQ7Z745 1585 aa41.81■■■■■ 4.28
SKP1-206ENST00000519321 SMARCA2P51531 1590 aa41.8■■■■■ 4.28
SKP1-206ENST00000519321 ATAD2BQ9ULI0 1458 aa41.79■■■■■ 4.28
SKP1-206ENST00000519321 NCAPD3P42695 1498 aa41.75■■■■■ 4.27
SKP1-206ENST00000519321 PEG3Q9GZU2 1588 aa41.69■■■■■ 4.26
SKP1-206ENST00000519321 HMGXB3Q12766 1538 aa41.58■■■■■ 4.25
SKP1-206ENST00000519321 BAZ1BQ9UIG0 1483 aaKnown RBP41.47■■■■■ 4.23
SKP1-206ENST00000519321 RSF1Q96T23 1441 aaPredicted RBP41.45■■■■■ 4.23
SKP1-206ENST00000519321 WIZO95785 1651 aa41.38■■■■■ 4.21
SKP1-206ENST00000519321 TOP2AP11388 1531 aaKnown RBP41.01■■■■■ 4.16
SKP1-206ENST00000519321 LAMC3Q9Y6N6 1575 aa40.62■■■■■ 4.09
SKP1-206ENST00000519321 SUPT5HO00267 1087 aaKnown RBP40.6■■■■■ 4.09
SKP1-206ENST00000519321 NESP48681 1621 aa40.56■■■■■ 4.08
SKP1-206ENST00000519321 CADPSQ9ULU8 1353 aa40.54■■■■■ 4.08
SKP1-206ENST00000519321 CCDC88BA6NC98 1476 aa40.5■■■■■ 4.07
SKP1-206ENST00000519321 ERCC6Q03468 1493 aa40.4■■■■■ 4.06
SKP1-206ENST00000519321 PDS5BQ9NTI5 1447 aa40.35■■■■■ 4.05
SKP1-206ENST00000519321 CFTRP13569 1480 aa40.35■■■■■ 4.05
SKP1-206ENST00000519321 KIF21AQ7Z4S6 1674 aa40.14■■■■■ 4.02
SKP1-206ENST00000519321 PRDM2Q13029 1718 aa40.08■■■■■ 4.01
SKP1-206ENST00000519321 FANCD2Q9BXW9 1451 aa40.07■■■■■ 4
SKP1-206ENST00000519321 CEP164Q9UPV0 1460 aa40.01■■■■■ 4
SKP1-206ENST00000519321 THOC2Q8NI27 1593 aaKnown RBP39.94■■■■□ 3.98
SKP1-206ENST00000519321 CUX2O14529 1486 aa39.9■■■■□ 3.98
SKP1-206ENST00000519321 MRC2Q9UBG0 1479 aa39.88■■■■□ 3.98
SKP1-206ENST00000519321 WDR62O43379 1518 aa39.74■■■■□ 3.95
SKP1-206ENST00000519321 URB2Q14146 1524 aaKnown RBP39.6■■■■□ 3.93
SKP1-206ENST00000519321 ABCC8Q09428 1581 aa39.55■■■■□ 3.92
SKP1-206ENST00000519321 DNMBPQ6XZF7 1577 aa39.45■■■■□ 3.91
SKP1-206ENST00000519321 TOPBP1Q92547 1522 aa39.45■■■■□ 3.91
SKP1-206ENST00000519321 CUX1P39880 1505 aa39.22■■■■□ 3.87
SKP1-206ENST00000519321 IFT140Q96RY7 1462 aa39.17■■■■□ 3.86
SKP1-206ENST00000519321 POLA1P09884 1462 aaPredicted RBP39.12■■■■□ 3.85
SKP1-206ENST00000519321 WRNQ14191 1432 aaPredicted RBP eCLIP39.12■■■■□ 3.853e-11■■■□□ 19.1
SKP1-206ENST00000519321 FGD5Q6ZNL6 1462 aa39.07■■■■□ 3.85
SKP1-206ENST00000519321 TOP2BQ02880 1626 aa39■■■■□ 3.83
SKP1-206ENST00000519321 BIVM-ERCC5R4GMW8 1640 aa39■■■■□ 3.83
SKP1-206ENST00000519321 SOGA1O94964 1423 aa38.99■■■■□ 3.83
SKP1-206ENST00000519321 TARBP1Q13395 1621 aaKnown RBP38.98■■■■□ 3.83
SKP1-206ENST00000519321 SYNJ1O43426 1573 aa38.95■■■■□ 3.83
SKP1-206ENST00000519321 RAD54L2Q9Y4B4 1467 aa38.92■■■■□ 3.82
SKP1-206ENST00000519321 ZNF608Q9ULD9 1512 aaPredicted RBP38.88■■■■□ 3.81
SKP1-206ENST00000519321 WDR97A6NE52 1622 aa38.79■■■■□ 3.8
SKP1-206ENST00000519321 EIF4G3O43432 1585 aaKnown RBP38.78■■■■□ 3.8
SKP1-206ENST00000519321 ABCA10Q8WWZ4 1543 aa38.73■■■■□ 3.79
SKP1-206ENST00000519321 AQRO60306 1485 aaKnown RBP eCLIP38.72■■■■□ 3.793e-6■■□□□ 13.8
SKP1-206ENST00000519321 TDRD9Q8NDG6 1382 aaKnown RBP38.7■■■■□ 3.78
SKP1-206ENST00000519321 GAPVD1Q14C86 1478 aa38.55■■■■□ 3.76
SKP1-206ENST00000519321 ABCA5Q8WWZ7 1642 aa38.53■■■■□ 3.76
SKP1-206ENST00000519321 GRIN2BQ13224 1484 aa38.52■■■■□ 3.76
SKP1-206ENST00000519321 PBRM1Q86U86 1689 aa38.43■■■■□ 3.74
SKP1-206ENST00000519321 MAGI1Q96QZ7 1491 aaPredicted RBP38.41■■■■□ 3.74
SKP1-206ENST00000519321 TRIM41Q8WV44 630 aa38.4■■■■□ 3.74
SKP1-206ENST00000519321 SNAPC4Q5SXM2 1469 aa38.39■■■■□ 3.74
SKP1-206ENST00000519321 KIF27Q86VH2 1401 aa38.31■■■■□ 3.72
SKP1-206ENST00000519321 DNAJC5Q9H3Z4 198 aa38.31■■■■□ 3.72
SKP1-206ENST00000519321 OSCARQ8IYS5 282 aa38.3■■■■□ 3.72
SKP1-206ENST00000519321 ERICH3Q5RHP9 1530 aa38.29■■■■□ 3.72
SKP1-206ENST00000519321 FBLN2P98095 1184 aa38.24■■■■□ 3.71
SKP1-206ENST00000519321 SYNJ2O15056 1496 aa38.23■■■■□ 3.71
SKP1-206ENST00000519321 CHD1O14646 1710 aa38.23■■■■□ 3.71
SKP1-206ENST00000519321 CHMP7Q8WUX9 453 aaPredicted RBP38.21■■■■□ 3.71
SKP1-206ENST00000519321 ADAMTS12P58397 1594 aa38.14■■■■□ 3.7
SKP1-206ENST00000519321 FHAD1B1AJZ9 1412 aa38.13■■■■□ 3.7
SKP1-206ENST00000519321 IGF1RP08069 1367 aa38.07■■■■□ 3.69
SKP1-206ENST00000519321 CHIC1Q5VXU3 224 aa38.05■■■■□ 3.68
SKP1-206ENST00000519321 GRIN2AQ12879 1464 aa38.01■■■■□ 3.67
SKP1-206ENST00000519321 CUL7Q14999 1698 aa38.01■■■■□ 3.67
SKP1-206ENST00000519321 RUSC2Q8N2Y8 1516 aa37.92■■■■□ 3.66
SKP1-206ENST00000519321 CARMIL1Q5VZK9 1371 aa37.88■■■■□ 3.65
SKP1-206ENST00000519321 CLASP1Q7Z460 1538 aa37.83■■■■□ 3.65
SKP1-206ENST00000519321 NUP160Q12769 1436 aa37.83■■■■□ 3.65
SKP1-206ENST00000519321 EEA1Q15075 1411 aa37.79■■■■□ 3.64
SKP1-206ENST00000519321 CEP170Q5SW79 1584 aa37.76■■■■□ 3.64
SKP1-206ENST00000519321 RAPGEF2Q9Y4G8 1499 aa37.69■■■■□ 3.62
SKP1-206ENST00000519321 CSRNP3Q8WYN3 585 aa37.65■■■■□ 3.62
SKP1-206ENST00000519321 ARHGEF11O15085 1522 aa37.62■■■■□ 3.61
SKP1-206ENST00000519321 PRXQ9BXM0 1461 aa37.6■■■■□ 3.61
SKP1-206ENST00000519321 RIMBP3CA6NJZ7 1639 aa37.58■■■■□ 3.61
SKP1-206ENST00000519321 RIMBP3BA6NNM3 1639 aa37.58■■■■□ 3.61
Retrieved 100 of 20,778 RNA–protein pairs in 65.8 ms