RNA–Protein interactions for RNA: ENST00000394084.5

GAPVD1-205, Transcript of GTPase activating protein and VPS9 domains 1, humanhuman

TSL 1 (best) BASIC

Gene GAPVD1, Length 3,190 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GAPVD1-205ENST00000394084 NISCHQ9Y2I1 1504 aa28.46■■■□□ 2.15
GAPVD1-205ENST00000394084 SHROOM4Q9ULL8 1493 aa24.62■■□□□ 1.53
GAPVD1-205ENST00000394084 SUPT5HO00267 1087 aaKnown RBP24.21■■□□□ 1.47
GAPVD1-205ENST00000394084 ZCCHC6Q5VYS8 1495 aaKnown RBP24.08■■□□□ 1.45
GAPVD1-205ENST00000394084 CCDC180Q9P1Z9 1646 aa24.03■■□□□ 1.44
GAPVD1-205ENST00000394084 DCAF8L2P0C7V8 631 aa23.87■■□□□ 1.41
GAPVD1-205ENST00000394084 CHIC1Q5VXU3 224 aa23.48■■□□□ 1.35
GAPVD1-205ENST00000394084 MYO15BQ96JP2 1530 aa23.43■■□□□ 1.34
GAPVD1-205ENST00000394084 DCAF1Q9Y4B6 1507 aa23.23■■□□□ 1.31
GAPVD1-205ENST00000394084 PCGF6Q9BYE7 350 aa22.98■■□□□ 1.27
GAPVD1-205ENST00000394084 HRCP23327 699 aa22.97■■□□□ 1.27
GAPVD1-205ENST00000394084 LOC105371045A0A1W2PR82 267 aa22.89■■□□□ 1.25
GAPVD1-205ENST00000394084 ABCC9O60706 1549 aa22.75■■□□□ 1.23
GAPVD1-205ENST00000394084 SCRIBQ14160 1630 aa22.74■■□□□ 1.23
GAPVD1-205ENST00000394084 RSF1Q96T23 1441 aaPredicted RBP22.62■■□□□ 1.21
GAPVD1-205ENST00000394084 PPARGC1BQ86YN6 1023 aaKnown RBP22.62■■□□□ 1.21
GAPVD1-205ENST00000394084 TRIM41Q8WV44 630 aa22.46■■□□□ 1.19
GAPVD1-205ENST00000394084 RB1CC1Q8TDY2 1594 aa22.43■■□□□ 1.18
GAPVD1-205ENST00000394084 FAM9AQ8IZU1 332 aaPredicted RBP22.41■■□□□ 1.18
GAPVD1-205ENST00000394084 TRIM26Q12899 539 aaPredicted RBP22.4■■□□□ 1.18
GAPVD1-205ENST00000394084 EHMT2Q96KQ7 1210 aa22.31■■□□□ 1.16
GAPVD1-205ENST00000394084 CECR2Q9BXF3 1484 aa22.29■■□□□ 1.16
GAPVD1-205ENST00000394084 NACADO15069 1562 aa22.23■■□□□ 1.15
GAPVD1-205ENST00000394084 MROH2BQ7Z745 1585 aa22.19■■□□□ 1.14
GAPVD1-205ENST00000394084 WIZO95785 1651 aa22.09■■□□□ 1.13
GAPVD1-205ENST00000394084 ZEB1P37275 1124 aaPredicted RBP21.92■■□□□ 1.1
GAPVD1-205ENST00000394084 BAZ1AQ9NRL2 1556 aaPredicted RBP21.87■■□□□ 1.09
GAPVD1-205ENST00000394084 EIF4G1Q04637 1599 aaKnown RBP21.74■■□□□ 1.07
GAPVD1-205ENST00000394084 ABCC8Q09428 1581 aa21.69■■□□□ 1.06
GAPVD1-205ENST00000394084 TOP2AP11388 1531 aaKnown RBP21.67■■□□□ 1.06
GAPVD1-205ENST00000394084 CCDC88BA6NC98 1476 aa21.65■■□□□ 1.06
GAPVD1-205ENST00000394084 SMARCA4P51532 1647 aa21.65■■□□□ 1.06
GAPVD1-205ENST00000394084 TTBK1Q5TCY1 1321 aaPredicted RBP21.61■■□□□ 1.05
GAPVD1-205ENST00000394084 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP21.6■■□□□ 1.05
GAPVD1-205ENST00000394084 SMARCA2P51531 1590 aa21.58■■□□□ 1.05
GAPVD1-205ENST00000394084 UNC13AQ9UPW8 1703 aa21.56■■□□□ 1.04
GAPVD1-205ENST00000394084 CCER1Q8TC90 406 aaPredicted RBP21.53■■□□□ 1.04
GAPVD1-205ENST00000394084 PABPN1Q86U42 306 aaKnown RBP eCLIP21.52■■□□□ 1.04
GAPVD1-205ENST00000394084 SOGA1O94964 1423 aa21.52■■□□□ 1.04
GAPVD1-205ENST00000394084 CEP162Q5TB80 1403 aa21.45■■□□□ 1.02
GAPVD1-205ENST00000394084 RUSC2Q8N2Y8 1516 aa21.42■■□□□ 1.02
GAPVD1-205ENST00000394084 UBTFP17480 764 aaKnown RBP21.42■■□□□ 1.02
GAPVD1-205ENST00000394084 CSRNP3Q8WYN3 585 aa21.4■■□□□ 1.02
GAPVD1-205ENST00000394084 WRNQ14191 1432 aaPredicted RBP eCLIP21.36■■□□□ 1.019e-6■■■■■ 50.1
GAPVD1-205ENST00000394084 TNIKQ9UKE5 1360 aa21.36■■□□□ 1.01
GAPVD1-205ENST00000394084 BICRAQ9NZM4 1560 aa21.3■■□□□ 1
GAPVD1-205ENST00000394084 SCAF1Q9H7N4 1312 aaKnown RBP21.3■■□□□ 1
GAPVD1-205ENST00000394084 EEA1Q15075 1411 aa21.29■■□□□ 1
GAPVD1-205ENST00000394084 GOLGA3Q08378 1498 aa21.23■□□□□ 0.99
GAPVD1-205ENST00000394084 SYNJ1O43426 1573 aa21.14■□□□□ 0.98
GAPVD1-205ENST00000394084 DIEXFQ68CQ4 756 aaKnown RBP21.14■□□□□ 0.97
GAPVD1-205ENST00000394084 PEG3Q9GZU2 1588 aa21.13■□□□□ 0.97
GAPVD1-205ENST00000394084 ATAD2BQ9ULI0 1458 aa21.09■□□□□ 0.97
GAPVD1-205ENST00000394084 RANGAP1P46060 587 aaPredicted RBP21.09■□□□□ 0.97
GAPVD1-205ENST00000394084 CEP164Q9UPV0 1460 aa21.07■□□□□ 0.96
GAPVD1-205ENST00000394084 BAZ1BQ9UIG0 1483 aaKnown RBP21.06■□□□□ 0.96
GAPVD1-205ENST00000394084 HNRNPUL2Q1KMD3 747 aaKnown RBP21.05■□□□□ 0.96
GAPVD1-205ENST00000394084 CLIP1P30622 1438 aa21.03■□□□□ 0.96
GAPVD1-205ENST00000394084 NEUROD1Q13562 356 aa21.03■□□□□ 0.96
GAPVD1-205ENST00000394084 ACIN1Q9UKV3 1341 aaKnown RBP21.03■□□□□ 0.96
GAPVD1-205ENST00000394084 KIF21BO75037 1637 aa21■□□□□ 0.95
GAPVD1-205ENST00000394084 RAPGEF2Q9Y4G8 1499 aa20.96■□□□□ 0.95
GAPVD1-205ENST00000394084 APLP2Q06481 763 aa20.94■□□□□ 0.94
GAPVD1-205ENST00000394084 ZNF316A6NFI3 1004 aaPredicted RBP20.92■□□□□ 0.94
GAPVD1-205ENST00000394084 VPS8Q8N3P4 1428 aa20.92■□□□□ 0.94
GAPVD1-205ENST00000394084 CENPBP07199 599 aaPredicted RBP20.88■□□□□ 0.93
GAPVD1-205ENST00000394084 PELP1Q8IZL8 1130 aaKnown RBP20.85■□□□□ 0.93
GAPVD1-205ENST00000394084 GTF3C3Q9Y5Q9 886 aa20.84■□□□□ 0.93
GAPVD1-205ENST00000394084 TOP2BQ02880 1626 aa20.81■□□□□ 0.92
GAPVD1-205ENST00000394084 YTHDC1Q96MU7 727 aaKnown RBP20.77■□□□□ 0.92
GAPVD1-205ENST00000394084 BIVM-ERCC5R4GMW8 1640 aa20.7■□□□□ 0.9
GAPVD1-205ENST00000394084 MIER1Q8N108 512 aa20.69■□□□□ 0.9
GAPVD1-205ENST00000394084 PRXQ9BXM0 1461 aa20.67■□□□□ 0.9
GAPVD1-205ENST00000394084 KANK4Q5T7N3 995 aaPredicted RBP20.65■□□□□ 0.9
GAPVD1-205ENST00000394084 ARAP1Q96P48 1450 aa20.64■□□□□ 0.9
GAPVD1-205ENST00000394084 CUX1P39880 1505 aa20.63■□□□□ 0.89
GAPVD1-205ENST00000394084 ERICH3Q5RHP9 1530 aa20.63■□□□□ 0.89
GAPVD1-205ENST00000394084 NCAPD3P42695 1498 aa20.61■□□□□ 0.89
GAPVD1-205ENST00000394084 KIF27Q86VH2 1401 aa20.58■□□□□ 0.89
GAPVD1-205ENST00000394084 HMGXB3Q12766 1538 aa20.58■□□□□ 0.88
GAPVD1-205ENST00000394084 DHX57Q6P158 1386 aaKnown RBP20.53■□□□□ 0.88
GAPVD1-205ENST00000394084 CFTRP13569 1480 aa20.5■□□□□ 0.87
GAPVD1-205ENST00000394084 ITGAEP38570 1179 aa20.49■□□□□ 0.87
GAPVD1-205ENST00000394084 ARHGAP35Q9NRY4 1499 aa20.45■□□□□ 0.86
GAPVD1-205ENST00000394084 CLSPNQ9HAW4 1339 aa20.43■□□□□ 0.86
GAPVD1-205ENST00000394084 RRBP1Q9P2E9 1410 aaKnown RBP20.42■□□□□ 0.86
GAPVD1-205ENST00000394084 CUX2O14529 1486 aa20.4■□□□□ 0.86
GAPVD1-205ENST00000394084 CCNB3Q8WWL7 1395 aa20.39■□□□□ 0.85
GAPVD1-205ENST00000394084 IGF1RP08069 1367 aa20.36■□□□□ 0.85
GAPVD1-205ENST00000394084 CARMIL1Q5VZK9 1371 aa20.29■□□□□ 0.84
GAPVD1-205ENST00000394084 CADPSQ9ULU8 1353 aa20.28■□□□□ 0.84
GAPVD1-205ENST00000394084 P3H3Q8IVL6 736 aa20.28■□□□□ 0.84
GAPVD1-205ENST00000394084 FGD5Q6ZNL6 1462 aa20.27■□□□□ 0.84
GAPVD1-205ENST00000394084 ATP1B4Q9UN42 357 aaPredicted RBP20.26■□□□□ 0.83
GAPVD1-205ENST00000394084 RAB3GAP2Q9H2M9 1393 aa20.25■□□□□ 0.83
GAPVD1-205ENST00000394084 PRDM2Q13029 1718 aa20.24■□□□□ 0.83
GAPVD1-205ENST00000394084 TIAM1Q13009 1591 aa20.22■□□□□ 0.83
GAPVD1-205ENST00000394084 FAM50AQ14320 339 aaKnown RBP20.21■□□□□ 0.83
GAPVD1-205ENST00000394084 PHLDB1Q86UU1 1377 aa20.18■□□□□ 0.82
GAPVD1-205ENST00000394084 LRRC9Q6ZRR7 1453 aa20.16■□□□□ 0.82
Retrieved 100 of 20,778 RNA–protein pairs in 196.8 ms