RNA–Protein interactions for RNA: ENST00000555075.5

ACTN1-214, Transcript of actinin alpha 1, humanhuman

TSL 3

Gene ACTN1, Length 828 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ACTN1-214ENST00000555075 NISCHQ9Y2I1 1504 aa28.53■■■□□ 2.16
ACTN1-214ENST00000555075 CCDC180Q9P1Z9 1646 aa25.27■■□□□ 1.64
ACTN1-214ENST00000555075 ABCC9O60706 1549 aa25.09■■□□□ 1.61
ACTN1-214ENST00000555075 DCAF8L2P0C7V8 631 aa24.08■■□□□ 1.45
ACTN1-214ENST00000555075 RB1CC1Q8TDY2 1594 aa23.95■■□□□ 1.42
ACTN1-214ENST00000555075 NACADO15069 1562 aa23.79■■□□□ 1.4
ACTN1-214ENST00000555075 ZCCHC6Q5VYS8 1495 aaKnown RBP23.78■■□□□ 1.4
ACTN1-214ENST00000555075 MYO15BQ96JP2 1530 aa23.6■■□□□ 1.37
ACTN1-214ENST00000555075 DCAF1Q9Y4B6 1507 aa23.58■■□□□ 1.36
ACTN1-214ENST00000555075 UNC13AQ9UPW8 1703 aa23.4■■□□□ 1.34
ACTN1-214ENST00000555075 PABPN1Q86U42 306 aaKnown RBP eCLIP23.36■■□□□ 1.33
ACTN1-214ENST00000555075 DNAJC5BQ9UF47 199 aa23.32■■□□□ 1.32
ACTN1-214ENST00000555075 BICRAQ9NZM4 1560 aa23.23■■□□□ 1.31
ACTN1-214ENST00000555075 SCRIBQ14160 1630 aa23.16■■□□□ 1.3
ACTN1-214ENST00000555075 SHROOM4Q9ULL8 1493 aa22.92■■□□□ 1.26
ACTN1-214ENST00000555075 CC2D2AQ9P2K1 1620 aa22.66■■□□□ 1.22
ACTN1-214ENST00000555075 EIF4G1Q04637 1599 aaKnown RBP22.66■■□□□ 1.22
ACTN1-214ENST00000555075 CECR2Q9BXF3 1484 aa22.57■■□□□ 1.2
ACTN1-214ENST00000555075 BAZ1AQ9NRL2 1556 aaPredicted RBP22.16■■□□□ 1.14
ACTN1-214ENST00000555075 SMARCA4P51532 1647 aa22.1■■□□□ 1.13
ACTN1-214ENST00000555075 SMARCA2P51531 1590 aa21.99■■□□□ 1.11
ACTN1-214ENST00000555075 MROH2BQ7Z745 1585 aa21.99■■□□□ 1.11
ACTN1-214ENST00000555075 NCAPD3P42695 1498 aa21.95■■□□□ 1.1
ACTN1-214ENST00000555075 ATAD2BQ9ULI0 1458 aa21.95■■□□□ 1.1
ACTN1-214ENST00000555075 BAZ1BQ9UIG0 1483 aaKnown RBP21.87■■□□□ 1.09
ACTN1-214ENST00000555075 HMGXB3Q12766 1538 aa21.84■■□□□ 1.09
ACTN1-214ENST00000555075 PEG3Q9GZU2 1588 aa21.82■■□□□ 1.08
ACTN1-214ENST00000555075 RSF1Q96T23 1441 aaPredicted RBP21.81■■□□□ 1.08
ACTN1-214ENST00000555075 WIZO95785 1651 aa21.76■■□□□ 1.07
ACTN1-214ENST00000555075 ERCC6Q03468 1493 aa21.66■■□□□ 1.06
ACTN1-214ENST00000555075 SUPT5HO00267 1087 aaKnown RBP21.61■■□□□ 1.05
ACTN1-214ENST00000555075 NESP48681 1621 aa21.58■■□□□ 1.05
ACTN1-214ENST00000555075 TOP2AP11388 1531 aaKnown RBP21.57■■□□□ 1.04
ACTN1-214ENST00000555075 CUX2O14529 1486 aa21.53■■□□□ 1.04
ACTN1-214ENST00000555075 LAMC3Q9Y6N6 1575 aa21.47■■□□□ 1.03
ACTN1-214ENST00000555075 THOC2Q8NI27 1593 aaKnown RBP21.36■■□□□ 1.01
ACTN1-214ENST00000555075 CADPSQ9ULU8 1353 aa21.34■■□□□ 1.01
ACTN1-214ENST00000555075 KIF21AQ7Z4S6 1674 aa21.34■■□□□ 1.01
ACTN1-214ENST00000555075 PDS5BQ9NTI5 1447 aa21.32■■□□□ 1
ACTN1-214ENST00000555075 CCDC88BA6NC98 1476 aa21.32■■□□□ 1
ACTN1-214ENST00000555075 DNAJC5Q9H3Z4 198 aa21.28■■□□□ 1
ACTN1-214ENST00000555075 CFTRP13569 1480 aa21.19■□□□□ 0.98
ACTN1-214ENST00000555075 MRC2Q9UBG0 1479 aa21.14■□□□□ 0.98
ACTN1-214ENST00000555075 CEP164Q9UPV0 1460 aa21.11■□□□□ 0.97
ACTN1-214ENST00000555075 FANCD2Q9BXW9 1451 aa21.1■□□□□ 0.97
ACTN1-214ENST00000555075 WDR62O43379 1518 aa21.09■□□□□ 0.97
ACTN1-214ENST00000555075 PRDM2Q13029 1718 aa20.99■□□□□ 0.95
ACTN1-214ENST00000555075 URB2Q14146 1524 aaKnown RBP20.89■□□□□ 0.94
ACTN1-214ENST00000555075 ABCC8Q09428 1581 aa20.82■□□□□ 0.92
ACTN1-214ENST00000555075 TOPBP1Q92547 1522 aa20.74■□□□□ 0.91
ACTN1-214ENST00000555075 DNMBPQ6XZF7 1577 aa20.74■□□□□ 0.91
ACTN1-214ENST00000555075 IFT140Q96RY7 1462 aa20.66■□□□□ 0.9
ACTN1-214ENST00000555075 WRNQ14191 1432 aaPredicted RBP eCLIP20.64■□□□□ 0.89
ACTN1-214ENST00000555075 ZNF608Q9ULD9 1512 aaPredicted RBP20.62■□□□□ 0.89
ACTN1-214ENST00000555075 CUX1P39880 1505 aa20.61■□□□□ 0.89
ACTN1-214ENST00000555075 FGD5Q6ZNL6 1462 aa20.58■□□□□ 0.89
ACTN1-214ENST00000555075 POLA1P09884 1462 aaPredicted RBP20.57■□□□□ 0.88
ACTN1-214ENST00000555075 SOGA1O94964 1423 aa20.57■□□□□ 0.88
ACTN1-214ENST00000555075 EIF4G3O43432 1585 aaKnown RBP20.55■□□□□ 0.88
ACTN1-214ENST00000555075 OSCARQ8IYS5 282 aa20.54■□□□□ 0.88
ACTN1-214ENST00000555075 RAD54L2Q9Y4B4 1467 aa20.5■□□□□ 0.87
ACTN1-214ENST00000555075 TARBP1Q13395 1621 aaKnown RBP20.5■□□□□ 0.87
ACTN1-214ENST00000555075 TRIM41Q8WV44 630 aa20.5■□□□□ 0.87
ACTN1-214ENST00000555075 TOP2BQ02880 1626 aa20.49■□□□□ 0.87
ACTN1-214ENST00000555075 SYNJ1O43426 1573 aa20.49■□□□□ 0.87
ACTN1-214ENST00000555075 BIVM-ERCC5R4GMW8 1640 aa20.47■□□□□ 0.87
ACTN1-214ENST00000555075 AQRO60306 1485 aaKnown RBP eCLIP20.44■□□□□ 0.867e-7■■■■□ 19.7
ACTN1-214ENST00000555075 TDRD9Q8NDG6 1382 aaKnown RBP20.43■□□□□ 0.86
ACTN1-214ENST00000555075 ABCA10Q8WWZ4 1543 aa20.36■□□□□ 0.85
ACTN1-214ENST00000555075 CHD1O14646 1710 aa20.35■□□□□ 0.85
ACTN1-214ENST00000555075 WDR97A6NE52 1622 aa20.34■□□□□ 0.85
ACTN1-214ENST00000555075 FBLN2P98095 1184 aa20.32■□□□□ 0.84
ACTN1-214ENST00000555075 RIMBP3CA6NJZ7 1639 aa20.31■□□□□ 0.84
ACTN1-214ENST00000555075 RIMBP3BA6NNM3 1639 aa20.31■□□□□ 0.84
ACTN1-214ENST00000555075 RIMBP3Q9UFD9 1639 aa20.31■□□□□ 0.84
ACTN1-214ENST00000555075 GAPVD1Q14C86 1478 aa20.31■□□□□ 0.84
ACTN1-214ENST00000555075 GRIN2BQ13224 1484 aa20.3■□□□□ 0.84
ACTN1-214ENST00000555075 SNAPC4Q5SXM2 1469 aa20.27■□□□□ 0.84
ACTN1-214ENST00000555075 ARHGEF11O15085 1522 aa20.26■□□□□ 0.83
ACTN1-214ENST00000555075 CHMP7Q8WUX9 453 aaPredicted RBP20.24■□□□□ 0.83
ACTN1-214ENST00000555075 KIF27Q86VH2 1401 aa20.24■□□□□ 0.83
ACTN1-214ENST00000555075 ABCA5Q8WWZ7 1642 aa20.21■□□□□ 0.83
ACTN1-214ENST00000555075 MAGI1Q96QZ7 1491 aaPredicted RBP20.2■□□□□ 0.82
ACTN1-214ENST00000555075 PBRM1Q86U86 1689 aa20.19■□□□□ 0.82
ACTN1-214ENST00000555075 CHIC1Q5VXU3 224 aa20.14■□□□□ 0.81
ACTN1-214ENST00000555075 ERICH3Q5RHP9 1530 aa20.13■□□□□ 0.81
ACTN1-214ENST00000555075 SYNJ2O15056 1496 aa20.12■□□□□ 0.81
ACTN1-214ENST00000555075 CLASP1Q7Z460 1538 aa20.1■□□□□ 0.81
ACTN1-214ENST00000555075 FHAD1B1AJZ9 1412 aa20.1■□□□□ 0.81
ACTN1-214ENST00000555075 ARAP1Q96P48 1450 aa20.07■□□□□ 0.8
ACTN1-214ENST00000555075 CYB5RLQ6IPT4 315 aa20.07■□□□□ 0.8
ACTN1-214ENST00000555075 ADAMTS12P58397 1594 aa20.04■□□□□ 0.8
ACTN1-214ENST00000555075 IGF1RP08069 1367 aa20.04■□□□□ 0.8
ACTN1-214ENST00000555075 GRIN2AQ12879 1464 aa20■□□□□ 0.79
ACTN1-214ENST00000555075 CARMIL1Q5VZK9 1371 aa20■□□□□ 0.79
ACTN1-214ENST00000555075 FAM9AQ8IZU1 332 aaPredicted RBP20■□□□□ 0.79
ACTN1-214ENST00000555075 CUL7Q14999 1698 aa20■□□□□ 0.79
ACTN1-214ENST00000555075 RUSC2Q8N2Y8 1516 aa19.97■□□□□ 0.79
ACTN1-214ENST00000555075 EEA1Q15075 1411 aa19.95■□□□□ 0.78
ACTN1-214ENST00000555075 CSRNP3Q8WYN3 585 aa19.93■□□□□ 0.78
Retrieved 100 of 20,778 RNA–protein pairs in 1121.5 ms