RNA–Protein interactions for RNA: ENST00000556083.1

ACTN1-216, Transcript of actinin alpha 1, humanhuman

TSL 1 (best)

Gene ACTN1, Length 4,674 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ACTN1-216ENST00000556083 DCAF8L2P0C7V8 631 aa18.09■□□□□ 0.49
ACTN1-216ENST00000556083 NISCHQ9Y2I1 1504 aa17.61■□□□□ 0.41
ACTN1-216ENST00000556083 PELP1Q8IZL8 1130 aaKnown RBP17.11■□□□□ 0.33
ACTN1-216ENST00000556083 SUPT5HO00267 1087 aaKnown RBP17.1■□□□□ 0.33
ACTN1-216ENST00000556083 FAM9AQ8IZU1 332 aaPredicted RBP17.06■□□□□ 0.32
ACTN1-216ENST00000556083 APLP2Q06481 763 aa16.9■□□□□ 0.3
ACTN1-216ENST00000556083 SHROOM4Q9ULL8 1493 aa16.6■□□□□ 0.25
ACTN1-216ENST00000556083 ZEB1P37275 1124 aaPredicted RBP16.43■□□□□ 0.22
ACTN1-216ENST00000556083 CCER1Q8TC90 406 aaPredicted RBP16.33■□□□□ 0.2
ACTN1-216ENST00000556083 CENPBP07199 599 aaPredicted RBP16.21■□□□□ 0.19
ACTN1-216ENST00000556083 TRIM41Q8WV44 630 aa16.15■□□□□ 0.18
ACTN1-216ENST00000556083 EHMT2Q96KQ7 1210 aa16.11■□□□□ 0.17
ACTN1-216ENST00000556083 ERICH6Q7L0X2 663 aa15.98■□□□□ 0.15
ACTN1-216ENST00000556083 UBTFP17480 764 aaKnown RBP15.95■□□□□ 0.14
ACTN1-216ENST00000556083 NEFLP07196 543 aa15.91■□□□□ 0.14
ACTN1-216ENST00000556083 PCGF6Q9BYE7 350 aa15.9■□□□□ 0.14
ACTN1-216ENST00000556083 MYT1Q01538 1121 aa15.89■□□□□ 0.13
ACTN1-216ENST00000556083 ATP1B4Q9UN42 357 aaPredicted RBP15.85■□□□□ 0.13
ACTN1-216ENST00000556083 RANGAP1P46060 587 aaPredicted RBP15.65■□□□□ 0.1
ACTN1-216ENST00000556083 TTBK1Q5TCY1 1321 aaPredicted RBP15.65■□□□□ 0.1
ACTN1-216ENST00000556083 TRIM26Q12899 539 aaPredicted RBP15.62■□□□□ 0.09
ACTN1-216ENST00000556083 DAXXQ9UER7 740 aaPredicted RBP15.48■□□□□ 0.07
ACTN1-216ENST00000556083 YTHDC1Q96MU7 727 aaKnown RBP15.46■□□□□ 0.07
ACTN1-216ENST00000556083 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.45■□□□□ 0.06
ACTN1-216ENST00000556083 HNRNPUL2Q1KMD3 747 aaKnown RBP15.45■□□□□ 0.06
ACTN1-216ENST00000556083 MYT1LQ9UL68 1186 aa15.45■□□□□ 0.06
ACTN1-216ENST00000556083 CHIC1Q5VXU3 224 aa15.24■□□□□ 0.03
ACTN1-216ENST00000556083 HRCP23327 699 aa15.2■□□□□ 0.02
ACTN1-216ENST00000556083 ITGAEP38570 1179 aa15.16■□□□□ 0.02
ACTN1-216ENST00000556083 POLR3GLQ9BT43 218 aa15.13■□□□□ 0.01
ACTN1-216ENST00000556083 ZNF316A6NFI3 1004 aaPredicted RBP15.02■□□□□ -0
ACTN1-216ENST00000556083 RTL5Q5HYW3 569 aaPredicted RBP15.02■□□□□ -0
ACTN1-216ENST00000556083 CDK11AQ9UQ88 783 aaPredicted RBP15.02□□□□□ -0.01
ACTN1-216ENST00000556083 ZBTB47Q9UFB7 747 aaPredicted RBP15□□□□□ -0.01
ACTN1-216ENST00000556083 CLSPNQ9HAW4 1339 aa15□□□□□ -0.01
ACTN1-216ENST00000556083 FAM50AQ14320 339 aaKnown RBP15□□□□□ -0.01
ACTN1-216ENST00000556083 TRIM52Q96A61 297 aa14.99□□□□□ -0.01
ACTN1-216ENST00000556083 SLC4A1APQ9BWU0 796 aaKnown RBP14.99□□□□□ -0.01
ACTN1-216ENST00000556083 PPARGC1BQ86YN6 1023 aaKnown RBP14.98□□□□□ -0.01
ACTN1-216ENST00000556083 NEFMP07197 916 aa14.97□□□□□ -0.01
ACTN1-216ENST00000556083 ABCC9O60706 1549 aa14.97□□□□□ -0.01
ACTN1-216ENST00000556083 ACIN1Q9UKV3 1341 aaKnown RBP14.93□□□□□ -0.02
ACTN1-216ENST00000556083 ANP32CO43423 234 aa14.93□□□□□ -0.02
ACTN1-216ENST00000556083 DIEXFQ68CQ4 756 aaKnown RBP14.92□□□□□ -0.02
ACTN1-216ENST00000556083 LOC105371045A0A1W2PR82 267 aa14.9□□□□□ -0.02
ACTN1-216ENST00000556083 CSRNP3Q8WYN3 585 aa14.83□□□□□ -0.04
ACTN1-216ENST00000556083 PABPN1Q86U42 306 aaKnown RBP eCLIP14.82□□□□□ -0.04
ACTN1-216ENST00000556083 ESF1Q9H501 851 aaKnown RBP14.74□□□□□ -0.05
ACTN1-216ENST00000556083 FBLN2P98095 1184 aa14.72□□□□□ -0.05
ACTN1-216ENST00000556083 NPM1P06748 294 aaKnown RBP eCLIP14.71□□□□□ -0.05
ACTN1-216ENST00000556083 NEUROD1Q13562 356 aa14.71□□□□□ -0.05
ACTN1-216ENST00000556083 CANXP27824 592 aaKnown RBP14.69□□□□□ -0.06
ACTN1-216ENST00000556083 CNGB1Q14028 1251 aaPredicted RBP14.64□□□□□ -0.07
ACTN1-216ENST00000556083 ZNF326Q5BKZ1 582 aaKnown RBP14.63□□□□□ -0.07
ACTN1-216ENST00000556083 BCANQ96GW7 911 aa14.6□□□□□ -0.07
ACTN1-216ENST00000556083 TONSLQ96HA7 1378 aa14.58□□□□□ -0.07
ACTN1-216ENST00000556083 CCDC180Q9P1Z9 1646 aa14.57□□□□□ -0.08
ACTN1-216ENST00000556083 EEA1Q15075 1411 aa14.57□□□□□ -0.08
ACTN1-216ENST00000556083 ANP32AP39687 249 aaKnown RBP14.57□□□□□ -0.08
ACTN1-216ENST00000556083 ZCCHC6Q5VYS8 1495 aaKnown RBP14.56□□□□□ -0.08
ACTN1-216ENST00000556083 GOLGA6L2Q8N9W4 650 aaPredicted RBP14.53□□□□□ -0.08
ACTN1-216ENST00000556083 UPF2Q9HAU5 1272 aaKnown RBP14.53□□□□□ -0.08
ACTN1-216ENST00000556083 ANP32BQ92688 251 aaKnown RBP14.53□□□□□ -0.08
ACTN1-216ENST00000556083 SCRIBQ14160 1630 aa14.52□□□□□ -0.08
ACTN1-216ENST00000556083 STAG3Q9UJ98 1225 aa14.52□□□□□ -0.08
ACTN1-216ENST00000556083 TSPY4P0CV99 314 aa14.51□□□□□ -0.09
ACTN1-216ENST00000556083 TSPY10P0CW01 314 aa14.51□□□□□ -0.09
ACTN1-216ENST00000556083 ZNF777Q9ULD5 760 aaPredicted RBP14.49□□□□□ -0.09
ACTN1-216ENST00000556083 EIF5BO60841 1220 aaKnown RBP14.48□□□□□ -0.09
ACTN1-216ENST00000556083 DCAF1Q9Y4B6 1507 aa14.48□□□□□ -0.09
ACTN1-216ENST00000556083 RSF1Q96T23 1441 aaPredicted RBP14.46□□□□□ -0.1
ACTN1-216ENST00000556083 SLC24A1O60721 1099 aa14.45□□□□□ -0.1
ACTN1-216ENST00000556083 RB1CC1Q8TDY2 1594 aa14.42□□□□□ -0.1
ACTN1-216ENST00000556083 P3H3Q8IVL6 736 aa14.41□□□□□ -0.1
ACTN1-216ENST00000556083 MTUS2Q5JR59 1369 aa14.39□□□□□ -0.11
ACTN1-216ENST00000556083 GTF3C3Q9Y5Q9 886 aa14.37□□□□□ -0.11
ACTN1-216ENST00000556083 CDCA8Q53HL2 280 aa14.37□□□□□ -0.11
ACTN1-216ENST00000556083 HSP90AA1P07900 732 aaKnown RBP14.35□□□□□ -0.11
ACTN1-216ENST00000556083 CHMP7Q8WUX9 453 aaPredicted RBP14.33□□□□□ -0.11
ACTN1-216ENST00000556083 CHGAP10645 457 aaKnown RBP14.33□□□□□ -0.12
ACTN1-216ENST00000556083 WDR43Q15061 677 aaKnown RBP eCLIP14.33□□□□□ -0.12
ACTN1-216ENST00000556083 TMC1Q8TDI8 760 aa14.32□□□□□ -0.12
ACTN1-216ENST00000556083 NACADO15069 1562 aa14.32□□□□□ -0.12
ACTN1-216ENST00000556083 ANP32EQ9BTT0 268 aa14.31□□□□□ -0.12
ACTN1-216ENST00000556083 MYH16Q9H6N6 1097 aa14.29□□□□□ -0.12
ACTN1-216ENST00000556083 PLEKHD1A6NEE1 506 aa14.28□□□□□ -0.12
ACTN1-216ENST00000556083 NPM2Q86SE8 214 aaKnown RBP14.28□□□□□ -0.12
ACTN1-216ENST00000556083 CLIP1P30622 1438 aa14.27□□□□□ -0.13
ACTN1-216ENST00000556083 GOLGA3Q08378 1498 aa14.25□□□□□ -0.13
ACTN1-216ENST00000556083 EIF4G2P78344 907 aaKnown RBP eCLIP14.24□□□□□ -0.13
ACTN1-216ENST00000556083 HNRNPUQ00839 825 aaKnown RBP eCLIP14.23□□□□□ -0.13
ACTN1-216ENST00000556083 CHMP4BQ9H444 224 aaKnown RBP14.23□□□□□ -0.13
ACTN1-216ENST00000556083 ARID3CA6NKF2 412 aa14.22□□□□□ -0.13
ACTN1-216ENST00000556083 CFAP53Q96M91 514 aa14.22□□□□□ -0.13
ACTN1-216ENST00000556083 KIF27Q86VH2 1401 aa14.21□□□□□ -0.13
ACTN1-216ENST00000556083 CCDC136Q96JN2 1154 aa14.19□□□□□ -0.14
ACTN1-216ENST00000556083 GLIPR1L2Q4G1C9 344 aa14.16□□□□□ -0.14
ACTN1-216ENST00000556083 TIMELESSQ9UNS1 1208 aa14.16□□□□□ -0.14
ACTN1-216ENST00000556083 DDRGK1Q96HY6 314 aa14.15□□□□□ -0.14
ACTN1-216ENST00000556083 MRS2Q9HD23 443 aa14.15□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 39.5 ms