Protein–RNA interactions for Protein: Q9Y566

SHANK1, SH3 and multiple ankyrin repeat domains protein 1, humanhuman

Predictions only

Length 2,161 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK1Q9Y566 SDCCAG3-201ENST00000298537 2314 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
SHANK1Q9Y566 PABPC1L-202ENST00000217074 1263 ntTSL 5 BASIC21.79■■□□□ 1.08
SHANK1Q9Y566 GUCD1-202ENST00000402766 865 ntTSL 2 BASIC21.79■■□□□ 1.08
SHANK1Q9Y566 ARPC4-208ENST00000498623 942 ntTSL 2 BASIC21.79■■□□□ 1.08
SHANK1Q9Y566 DRD5P2-201ENST00000421395 2012 ntBASIC21.79■■□□□ 1.08
SHANK1Q9Y566 RFFL-206ENST00000447669 2030 ntAPPRIS P1 TSL 5 BASIC21.79■■□□□ 1.08
SHANK1Q9Y566 AC021242.3-201ENST00000607598 1377 ntBASIC21.79■■□□□ 1.08
SHANK1Q9Y566 MED22-201ENST00000343730 1437 ntAPPRIS P4 TSL 1 (best) BASIC21.78■■□□□ 1.08
SHANK1Q9Y566 PPP1R14A-205ENST00000591585 949 ntTSL 2 BASIC21.78■■□□□ 1.08
SHANK1Q9Y566 FAM136A-202ENST00000430566 885 ntTSL 3 BASIC21.77■■□□□ 1.08
SHANK1Q9Y566 C9orf40-201ENST00000376854 2327 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
SHANK1Q9Y566 FAM173A-201ENST00000219535 806 ntAPPRIS ALT2 TSL 2 BASIC21.77■■□□□ 1.07
SHANK1Q9Y566 PPM1J-201ENST00000309276 1863 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
SHANK1Q9Y566 MNX1-201ENST00000252971 2174 ntAPPRIS P3 TSL 1 (best) BASIC21.76■■□□□ 1.07
SHANK1Q9Y566 CARM1-202ENST00000344150 2722 ntAPPRIS ALT2 TSL 5 BASIC21.76■■□□□ 1.07
SHANK1Q9Y566 GNAS-207ENST00000354359 1975 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
SHANK1Q9Y566 GNAS-210ENST00000371085 1972 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
SHANK1Q9Y566 PCGF3-202ENST00000400151 1175 ntTSL 2 BASIC21.76■■□□□ 1.07
SHANK1Q9Y566 ERGIC1-206ENST00000519860 1000 ntTSL 3 BASIC21.76■■□□□ 1.07
SHANK1Q9Y566 MIR4281-201ENST00000580852 62 ntBASIC21.76■■□□□ 1.07
SHANK1Q9Y566 CLK2-201ENST00000355560 2120 ntAPPRIS ALT1 TSL 5 BASIC21.76■■□□□ 1.07
SHANK1Q9Y566 PVT1-212ENST00000521951 1535 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
SHANK1Q9Y566 CDKN2A-208ENST00000498124 880 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
SHANK1Q9Y566 RHOF-203ENST00000537171 1485 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
SHANK1Q9Y566 TMEM80-201ENST00000397510 1094 ntAPPRIS P2 TSL 5 BASIC21.75■■□□□ 1.07
SHANK1Q9Y566 AL445237.1-202ENST00000604581 425 ntTSL 5 BASIC21.75■■□□□ 1.07
SHANK1Q9Y566 MIR663AHG-227ENST00000608084 765 ntTSL 5 BASIC21.75■■□□□ 1.07
SHANK1Q9Y566 AC092028.1-203ENST00000608262 953 ntBASIC21.75■■□□□ 1.07
SHANK1Q9Y566 DRAP1-201ENST00000312515 989 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
SHANK1Q9Y566 NDUFA10-204ENST00000407129 699 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
SHANK1Q9Y566 UBE2J2-202ENST00000349431 1733 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
SHANK1Q9Y566 R3HCC1-202ENST00000411463 1467 ntAPPRIS P5 TSL 5 BASIC21.74■■□□□ 1.07
SHANK1Q9Y566 CTAG1B-202ENST00000359887 998 ntTSL 2 BASIC21.74■■□□□ 1.07
SHANK1Q9Y566 TSPY9P-201ENST00000440215 945 ntBASIC21.74■■□□□ 1.07
SHANK1Q9Y566 TSPY11P-201ENST00000442607 1045 ntBASIC21.74■■□□□ 1.07
SHANK1Q9Y566 HMGA2-201ENST00000354636 1529 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
SHANK1Q9Y566 PICK1-201ENST00000356976 2055 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
SHANK1Q9Y566 NAXE-201ENST00000368233 1012 ntTSL 2 BASIC21.73■■□□□ 1.07
SHANK1Q9Y566 SRRM2-231ENST00000630499 1207 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
SHANK1Q9Y566 Z98883.1-202ENST00000635107 1289 ntTSL 5 BASIC21.73■■□□□ 1.07
SHANK1Q9Y566 MDK-202ENST00000395565 951 ntAPPRIS P2 TSL 2 BASIC21.72■■□□□ 1.07
SHANK1Q9Y566 AL136116.3-201ENST00000402907 1138 ntBASIC21.72■■□□□ 1.07
SHANK1Q9Y566 CLIC3-203ENST00000494426 1017 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
SHANK1Q9Y566 FAH-213ENST00000561421 1549 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
SHANK1Q9Y566 CLDN15-201ENST00000308344 1370 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
SHANK1Q9Y566 EFEMP2-201ENST00000307998 2034 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
SHANK1Q9Y566 KRT18P10-201ENST00000388836 1287 ntBASIC21.72■■□□□ 1.07
SHANK1Q9Y566 AC090587.2-201ENST00000430222 527 ntTSL 2 BASIC21.72■■□□□ 1.07
SHANK1Q9Y566 MIR4466-201ENST00000606121 54 ntBASIC21.72■■□□□ 1.07
SHANK1Q9Y566 AC005551.1-201ENST00000641816 493 ntAPPRIS P1 BASIC21.72■■□□□ 1.07
SHANK1Q9Y566 ZDHHC23-206ENST00000498275 2055 ntAPPRIS ALT2 TSL 2 BASIC21.72■■□□□ 1.07
SHANK1Q9Y566 JMJD8-201ENST00000412368 2038 ntAPPRIS P2 TSL 1 (best) BASIC21.71■■□□□ 1.07
SHANK1Q9Y566 ANKRD20A11P-201ENST00000344693 1088 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
SHANK1Q9Y566 FAM72B-203ENST00000452190 748 ntTSL 3 BASIC21.71■■□□□ 1.07
SHANK1Q9Y566 MIR3621-201ENST00000580529 85 ntBASIC21.71■■□□□ 1.07
SHANK1Q9Y566 SLC16A10-206ENST00000612036 1231 ntTSL 5 BASIC21.71■■□□□ 1.07
SHANK1Q9Y566 AL117332.1-201ENST00000622628 974 ntBASIC21.71■■□□□ 1.07
SHANK1Q9Y566 ERO1A-211ENST00000629528 998 ntTSL 5 BASIC21.71■■□□□ 1.07
SHANK1Q9Y566 IL15RA-209ENST00000397255 759 ntAPPRIS ALT2 TSL 5 BASIC21.71■■□□□ 1.07
SHANK1Q9Y566 IL15RA-216ENST00000530685 660 ntTSL 5 BASIC21.71■■□□□ 1.07
SHANK1Q9Y566 NEUROG3-201ENST00000242462 1376 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.07
SHANK1Q9Y566 ZNF263-204ENST00000573578 1636 ntTSL 5 BASIC21.7■■□□□ 1.07
SHANK1Q9Y566 CCDC136-206ENST00000464832 1720 ntAPPRIS ALT2 TSL 5 BASIC21.7■■□□□ 1.06
SHANK1Q9Y566 SV2B-203ENST00000545111 2099 ntTSL 2 BASIC21.7■■□□□ 1.06
SHANK1Q9Y566 GBX1-201ENST00000297537 1092 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
SHANK1Q9Y566 AC120024.1-201ENST00000562672 995 ntBASIC21.7■■□□□ 1.06
SHANK1Q9Y566 TMC6-218ENST00000591436 1155 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
SHANK1Q9Y566 AL357078.1-201ENST00000448344 310 ntTSL 4 BASIC21.7■■□□□ 1.06
SHANK1Q9Y566 POLR2F-211ENST00000488684 564 ntTSL 2 BASIC21.7■■□□□ 1.06
SHANK1Q9Y566 QDPR-206ENST00000508623 601 ntTSL 3 BASIC21.7■■□□□ 1.06
SHANK1Q9Y566 SLC35B2-204ENST00000537814 1715 ntTSL 2 BASIC21.69■■□□□ 1.06
SHANK1Q9Y566 GNAS-211ENST00000371095 1931 ntAPPRIS ALT1 TSL 1 (best) BASIC21.69■■□□□ 1.06
SHANK1Q9Y566 LYPD6B-203ENST00000409642 1577 ntAPPRIS P3 TSL 1 (best) BASIC21.69■■□□□ 1.06
SHANK1Q9Y566 FOXF2-201ENST00000259806 2187 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
SHANK1Q9Y566 SENP5-202ENST00000419026 973 ntTSL 3 BASIC21.69■■□□□ 1.06
SHANK1Q9Y566 LACTB-201ENST00000261893 1972 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
SHANK1Q9Y566 CCDC61-204ENST00000595358 1817 ntAPPRIS P2 TSL 5 BASIC21.69■■□□□ 1.06
SHANK1Q9Y566 HNRNPUL1-222ENST00000617774 451 ntTSL 5 BASIC21.68■■□□□ 1.06
SHANK1Q9Y566 DHRS13-202ENST00000394901 2037 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
SHANK1Q9Y566 FAM162B-201ENST00000368557 1036 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
SHANK1Q9Y566 FAM228B-208ENST00000613899 1238 ntAPPRIS ALT2 TSL 1 (best) BASIC21.68■■□□□ 1.06
SHANK1Q9Y566 CTF1-201ENST00000279804 1664 ntAPPRIS P3 TSL 1 (best) BASIC21.67■■□□□ 1.06
SHANK1Q9Y566 RPP21-222ENST00000433076 577 ntTSL 2 BASIC21.67■■□□□ 1.06
SHANK1Q9Y566 HSBP1L1-201ENST00000451882 771 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
SHANK1Q9Y566 CHTF8-208ENST00000522091 863 ntTSL 2 BASIC21.66■■□□□ 1.06
SHANK1Q9Y566 AC142086.6-201ENST00000621154 1765 ntBASIC21.66■■□□□ 1.06
SHANK1Q9Y566 AP003068.2-202ENST00000526623 1662 ntTSL 2 BASIC21.66■■□□□ 1.06
SHANK1Q9Y566 CASP9-201ENST00000333868 2019 ntAPPRIS P2 TSL 1 (best) BASIC21.66■■□□□ 1.06
SHANK1Q9Y566 CDH24-206ENST00000610348 2037 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
SHANK1Q9Y566 CFAP77-202ENST00000393215 901 ntAPPRIS ALT2 TSL 5 BASIC21.65■■□□□ 1.06
SHANK1Q9Y566 AL512631.2-201ENST00000604634 923 ntBASIC21.65■■□□□ 1.06
SHANK1Q9Y566 HMG20B-202ENST00000333651 1596 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
SHANK1Q9Y566 SLC25A1-202ENST00000451283 1514 ntTSL 2 BASIC21.65■■□□□ 1.06
SHANK1Q9Y566 LRRC61-205ENST00000493307 1456 ntAPPRIS P1 TSL 5 BASIC21.65■■□□□ 1.06
SHANK1Q9Y566 FBXL8-206ENST00000519917 1460 ntAPPRIS P1 TSL 5 BASIC21.65■■□□□ 1.06
SHANK1Q9Y566 TAZ-216ENST00000613002 1485 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
SHANK1Q9Y566 LTB4R-202ENST00000396782 1627 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
SHANK1Q9Y566 AC004540.2-202ENST00000451264 508 ntTSL 2 BASIC21.65■■□□□ 1.06
SHANK1Q9Y566 MXRA7-203ENST00000449428 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC21.65■■□□□ 1.06
SHANK1Q9Y566 POU3F3-201ENST00000361360 3064 ntAPPRIS P1 BASIC21.64■■□□□ 1.06
Retrieved 100 of 98,524 protein–RNA pairs in 20.6 ms