Protein–RNA interactions for Protein: Q38SD2

LRRK1, Leucine-rich repeat serine/threonine-protein kinase 1, humanhuman

Predictions only

Length 2,015 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRRK1Q38SD2 FGF22-202ENST00000586042 1288 ntTSL 1 (best) BASIC23.85■■□□□ 1.41
LRRK1Q38SD2 RBFOX2-209ENST00000438146 1356 ntAPPRIS P3 TSL 1 (best) BASIC23.85■■□□□ 1.41
LRRK1Q38SD2 FAM107B-205ENST00000378467 2374 ntAPPRIS P1 TSL 1 (best) BASIC23.85■■□□□ 1.41
LRRK1Q38SD2 USP2-204ENST00000525735 1704 ntAPPRIS ALT1 TSL 1 (best) BASIC23.85■■□□□ 1.41
LRRK1Q38SD2 FGD5-AS1-204ENST00000430166 1184 ntTSL 2 BASIC23.84■■□□□ 1.41
LRRK1Q38SD2 AC011448.1-201ENST00000555938 1100 ntAPPRIS P1 TSL 2 BASIC23.84■■□□□ 1.41
LRRK1Q38SD2 SSX2IP-209ENST00000603677 1149 ntTSL 1 (best) BASIC23.84■■□□□ 1.41
LRRK1Q38SD2 NAPA-201ENST00000263354 1839 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
LRRK1Q38SD2 CDKN2A-214ENST00000579755 1283 ntAPPRIS P1 TSL 1 (best) BASIC23.84■■□□□ 1.41
LRRK1Q38SD2 FAHD1-204ENST00000615972 757 ntTSL 5 BASIC23.84■■□□□ 1.41
LRRK1Q38SD2 SNAI3-AS1-204ENST00000567997 2048 ntBASIC23.84■■□□□ 1.41
LRRK1Q38SD2 AC103834.1-201ENST00000520383 144 ntBASIC23.83■■□□□ 1.41
LRRK1Q38SD2 AC010913.1-201ENST00000608612 420 ntTSL 2 BASIC23.83■■□□□ 1.41
LRRK1Q38SD2 AC010501.1-201ENST00000606270 1962 ntBASIC23.83■■□□□ 1.41
LRRK1Q38SD2 DRAM2-211ENST00000539140 1883 ntAPPRIS P1 TSL 1 (best) BASIC23.83■■□□□ 1.41
LRRK1Q38SD2 FKBP1A-211ENST00000618612 1518 ntTSL 1 (best) BASIC23.83■■□□□ 1.41
LRRK1Q38SD2 TTBK2-205ENST00000567274 1777 ntTSL 5 BASIC23.83■■□□□ 1.41
LRRK1Q38SD2 BSCL2-205ENST00000403550 1693 ntAPPRIS P3 TSL 5 BASIC23.83■■□□□ 1.41
LRRK1Q38SD2 AL121906.1-201ENST00000606866 440 ntTSL 3 BASIC23.83■■□□□ 1.4
LRRK1Q38SD2 SOHLH1-202ENST00000425225 1411 ntAPPRIS ALT2 TSL 5 BASIC23.82■■□□□ 1.4
LRRK1Q38SD2 AL022341.2-201ENST00000573609 1417 ntTSL 3 BASIC23.82■■□□□ 1.4
LRRK1Q38SD2 CCNJL-201ENST00000257536 1848 ntAPPRIS P1 TSL 2 BASIC23.82■■□□□ 1.4
LRRK1Q38SD2 BIN1-211ENST00000409400 2143 ntTSL 1 (best) BASIC23.82■■□□□ 1.4
LRRK1Q38SD2 GSK3A-201ENST00000222330 2188 ntAPPRIS P2 TSL 1 (best) BASIC23.82■■□□□ 1.4
LRRK1Q38SD2 QDPR-202ENST00000428702 1278 ntTSL 2 BASIC23.81■■□□□ 1.4
LRRK1Q38SD2 PHF23-212ENST00000576955 1944 ntTSL 2 BASIC23.81■■□□□ 1.4
LRRK1Q38SD2 YRDC-201ENST00000373044 1826 ntAPPRIS P1 TSL 1 (best) BASIC23.81■■□□□ 1.4
LRRK1Q38SD2 WIPI2-204ENST00000404704 1663 ntTSL 5 BASIC23.81■■□□□ 1.4
LRRK1Q38SD2 NPB-202ENST00000573081 2154 ntAPPRIS ALT2 BASIC23.8■■□□□ 1.4
LRRK1Q38SD2 CDK2AP1-201ENST00000261692 1625 ntAPPRIS P1 TSL 1 (best) BASIC23.8■■□□□ 1.4
LRRK1Q38SD2 CARNMT1-201ENST00000376830 1012 ntTSL 1 (best) BASIC23.8■■□□□ 1.4
LRRK1Q38SD2 AC019171.1-201ENST00000601251 1056 ntBASIC23.8■■□□□ 1.4
LRRK1Q38SD2 SYT7-202ENST00000535826 1621 ntTSL 5 BASIC23.8■■□□□ 1.4
LRRK1Q38SD2 MED22-201ENST00000343730 1437 ntAPPRIS P4 TSL 1 (best) BASIC23.8■■□□□ 1.4
LRRK1Q38SD2 MMP25-AS1-209ENST00000576250 779 ntTSL 5 BASIC23.79■■□□□ 1.4
LRRK1Q38SD2 SHISA5-201ENST00000296444 2369 ntTSL 1 (best) BASIC23.79■■□□□ 1.4
LRRK1Q38SD2 SERF1A-202ENST00000354833 1889 ntTSL 1 (best) BASIC23.79■■□□□ 1.4
LRRK1Q38SD2 SERF1B-201ENST00000380750 1889 ntTSL 1 (best) BASIC23.79■■□□□ 1.4
LRRK1Q38SD2 ANKRD9-204ENST00000559651 1444 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
LRRK1Q38SD2 FSD1-201ENST00000221856 1831 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
LRRK1Q38SD2 AC022616.5-201ENST00000518796 181 ntBASIC23.79■■□□□ 1.4
LRRK1Q38SD2 CTBP1-201ENST00000290921 2297 ntTSL 1 (best) BASIC23.79■■□□□ 1.4
LRRK1Q38SD2 EGFL8-219ENST00000333845 1310 ntAPPRIS P1 TSL 1 (best) BASIC23.79■■□□□ 1.4
LRRK1Q38SD2 CLEC2L-201ENST00000422142 1359 ntAPPRIS P2 TSL 3 BASIC23.79■■□□□ 1.4
LRRK1Q38SD2 MRAP2-201ENST00000257776 2153 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
LRRK1Q38SD2 TNFSF12-TNFSF13-201ENST00000293826 1816 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
LRRK1Q38SD2 LYL1-201ENST00000264824 1490 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
LRRK1Q38SD2 SPOCK3-221ENST00000512648 1456 ntTSL 1 (best) BASIC23.78■■□□□ 1.4
LRRK1Q38SD2 SNTB1-202ENST00000517992 2273 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
LRRK1Q38SD2 CTAG1B-201ENST00000328435 748 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
LRRK1Q38SD2 VSTM2A-202ENST00000402613 1076 ntTSL 2 BASIC23.78■■□□□ 1.4
LRRK1Q38SD2 CTAG1A-202ENST00000599837 748 ntAPPRIS P1 TSL 1 (best) BASIC23.78■■□□□ 1.4
LRRK1Q38SD2 MEIS3-204ENST00000558555 1715 ntAPPRIS ALT2 TSL 5 BASIC23.78■■□□□ 1.4
LRRK1Q38SD2 REEP6-201ENST00000233596 1794 ntAPPRIS P2 TSL 1 (best) BASIC23.78■■□□□ 1.4
LRRK1Q38SD2 CT47A7-201ENST00000434883 1288 ntAPPRIS P1 TSL 2 BASIC23.77■■□□□ 1.4
LRRK1Q38SD2 LYSMD2-202ENST00000454181 1228 ntTSL 1 (best) BASIC23.77■■□□□ 1.4
LRRK1Q38SD2 CACNG6-203ENST00000352529 1635 ntTSL 5 BASIC23.77■■□□□ 1.4
LRRK1Q38SD2 TMIE-201ENST00000326431 1824 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
LRRK1Q38SD2 RPUSD1-207ENST00000565809 1918 ntTSL 2 BASIC23.77■■□□□ 1.4
LRRK1Q38SD2 EPM2A-202ENST00000435470 1278 ntTSL 1 (best) BASIC23.77■■□□□ 1.4
LRRK1Q38SD2 CARMIL1-202ENST00000461945 1290 ntTSL 1 (best) BASIC23.77■■□□□ 1.4
LRRK1Q38SD2 MPST-203ENST00000401419 1345 ntAPPRIS P1 TSL 1 (best) BASIC23.77■■□□□ 1.4
LRRK1Q38SD2 C11orf80-204ENST00000525908 2135 ntAPPRIS P3 TSL 2 BASIC23.77■■□□□ 1.4
LRRK1Q38SD2 MSANTD2-201ENST00000239614 2495 ntTSL 2 BASIC23.76■■□□□ 1.39
LRRK1Q38SD2 TWF2-201ENST00000305533 1718 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
LRRK1Q38SD2 BOD1-202ENST00000311086 1562 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
LRRK1Q38SD2 EGFL8-220ENST00000395512 1312 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
LRRK1Q38SD2 PRR7-204ENST00000510492 1285 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
LRRK1Q38SD2 TMPO-AS1-201ENST00000546421 738 ntTSL 5 BASIC23.76■■□□□ 1.39
LRRK1Q38SD2 KAZALD1-201ENST00000370200 1913 ntAPPRIS P1 TSL 1 (best) BASIC23.76■■□□□ 1.39
LRRK1Q38SD2 DLX2-202ENST00000466293 1852 ntTSL 2 BASIC23.76■■□□□ 1.39
LRRK1Q38SD2 RCCD1-203ENST00000555155 1871 ntAPPRIS ALT1 TSL 5 BASIC23.76■■□□□ 1.39
LRRK1Q38SD2 TMEM125-202ENST00000439858 1786 ntAPPRIS P1 TSL 2 BASIC23.76■■□□□ 1.39
LRRK1Q38SD2 CENPVL1-201ENST00000602548 1620 ntAPPRIS P1 BASIC23.76■■□□□ 1.39
LRRK1Q38SD2 CENPVL2-201ENST00000634648 1620 ntAPPRIS P1 BASIC23.76■■□□□ 1.39
LRRK1Q38SD2 ZNF688-203ENST00000563276 1492 ntTSL 2 BASIC23.76■■□□□ 1.39
LRRK1Q38SD2 PKNOX2-AS1-201ENST00000532316 586 ntTSL 3 BASIC23.76■■□□□ 1.39
LRRK1Q38SD2 OXLD1-203ENST00000571503 803 ntTSL 2 BASIC23.76■■□□□ 1.39
LRRK1Q38SD2 TSPAN10-204ENST00000611590 1068 ntAPPRIS ALT2 TSL 1 (best) BASIC23.76■■□□□ 1.39
LRRK1Q38SD2 RFLNA-205ENST00000546355 2354 ntAPPRIS ALT1 TSL 1 (best) BASIC23.76■■□□□ 1.39
LRRK1Q38SD2 SLC25A1-202ENST00000451283 1514 ntTSL 2 BASIC23.75■■□□□ 1.39
LRRK1Q38SD2 SLC9A3R2-201ENST00000424542 2194 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
LRRK1Q38SD2 GYG2-205ENST00000398806 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC23.75■■□□□ 1.39
LRRK1Q38SD2 C5orf38-202ENST00000397835 681 ntAPPRIS ALT2 TSL 5 BASIC23.75■■□□□ 1.39
LRRK1Q38SD2 PEA15-201ENST00000360472 2471 ntAPPRIS P1 TSL 1 (best) BASIC23.75■■□□□ 1.39
LRRK1Q38SD2 RDH14-201ENST00000381249 1587 ntAPPRIS P1 TSL 1 (best) BASIC23.74■■□□□ 1.39
LRRK1Q38SD2 AL160276.1-201ENST00000636672 1312 ntAPPRIS P1 TSL 5 BASIC23.74■■□□□ 1.39
LRRK1Q38SD2 YPEL1-202ENST00000403503 466 ntTSL 3 BASIC23.74■■□□□ 1.39
LRRK1Q38SD2 PRMT5-228ENST00000627278 129 ntTSL 5 BASIC23.74■■□□□ 1.39
LRRK1Q38SD2 MROH6-211ENST00000534459 1789 ntAPPRIS ALT2 TSL 2 BASIC23.74■■□□□ 1.39
LRRK1Q38SD2 HOMER3-201ENST00000221222 1384 ntAPPRIS ALT1 TSL 5 BASIC23.73■■□□□ 1.39
LRRK1Q38SD2 ATP6V0A2-209ENST00000613625 1620 ntTSL 1 (best) BASIC23.73■■□□□ 1.39
LRRK1Q38SD2 CDCA5-202ENST00000404147 1012 ntTSL 2 BASIC23.73■■□□□ 1.39
LRRK1Q38SD2 FLJ37453-201ENST00000317122 2473 ntTSL 2 BASIC23.73■■□□□ 1.39
LRRK1Q38SD2 CEND1-201ENST00000330106 1649 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
LRRK1Q38SD2 TMUB1-203ENST00000462940 1549 ntAPPRIS P1 TSL 1 (best) BASIC23.73■■□□□ 1.39
LRRK1Q38SD2 KLC1-225ENST00000557575 2188 ntTSL 5 BASIC23.73■■□□□ 1.39
LRRK1Q38SD2 RFLNA-202ENST00000338359 652 ntAPPRIS P2 TSL 1 (best) BASIC23.72■■□□□ 1.39
LRRK1Q38SD2 MDK-203ENST00000395566 828 ntAPPRIS P2 TSL 1 (best) BASIC23.72■■□□□ 1.39
LRRK1Q38SD2 SMUG1-203ENST00000401977 1082 ntAPPRIS P1 TSL 5 BASIC23.72■■□□□ 1.39
Retrieved 100 of 98,524 protein–RNA pairs in 62.2 ms