Protein–RNA interactions for Protein: Q9NQI0

DDX4, Probable ATP-dependent RNA helicase DDX4, humanhuman

Known RBP Predictions only

Length 724 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX4Q9NQI0 CTSA-203ENST00000372459 1972 ntTSL 1 (best) BASIC28.8■■■□□ 2.2
DDX4Q9NQI0 TTC3-225ENST00000540756 2025 ntTSL 2 BASIC28.79■■■□□ 2.2
DDX4Q9NQI0 AL160276.1-201ENST00000636672 1312 ntAPPRIS P1 TSL 5 BASIC28.79■■■□□ 2.2
DDX4Q9NQI0 RBFA-201ENST00000262197 1219 ntTSL 1 (best) BASIC28.79■■■□□ 2.2
DDX4Q9NQI0 AC055876.1-201ENST00000430589 895 ntTSL 2 BASIC28.79■■■□□ 2.2
DDX4Q9NQI0 OXLD1-203ENST00000571503 803 ntTSL 2 BASIC28.79■■■□□ 2.2
DDX4Q9NQI0 PRR7-204ENST00000510492 1285 ntAPPRIS P1 TSL 1 (best) BASIC28.78■■■□□ 2.2
DDX4Q9NQI0 TMEM170A-202ENST00000561878 1072 ntAPPRIS P1 TSL 1 (best) BASIC28.78■■■□□ 2.2
DDX4Q9NQI0 AC009163.4-201ENST00000567194 530 ntAPPRIS P1 TSL 2 BASIC28.78■■■□□ 2.2
DDX4Q9NQI0 LAT-217ENST00000630764 610 ntAPPRIS ALT2 TSL 5 BASIC28.78■■■□□ 2.2
DDX4Q9NQI0 ZNF263-204ENST00000573578 1636 ntTSL 5 BASIC28.78■■■□□ 2.2
DDX4Q9NQI0 BOD1-202ENST00000311086 1562 ntAPPRIS P1 TSL 1 (best) BASIC28.78■■■□□ 2.2
DDX4Q9NQI0 NRG2-203ENST00000340391 1944 ntTSL 5 BASIC28.78■■■□□ 2.2
DDX4Q9NQI0 BMP7-204ENST00000450594 1857 ntTSL 2 BASIC28.78■■■□□ 2.2
DDX4Q9NQI0 RINL-208ENST00000598904 1846 ntAPPRIS P3 TSL 5 BASIC28.78■■■□□ 2.2
DDX4Q9NQI0 RHOF-203ENST00000537171 1485 ntTSL 1 (best) BASIC28.78■■■□□ 2.2
DDX4Q9NQI0 EGFL8-219ENST00000333845 1310 ntAPPRIS P1 TSL 1 (best) BASIC28.77■■■□□ 2.2
DDX4Q9NQI0 SHF-208ENST00000560734 1731 ntTSL 3 BASIC28.76■■■□□ 2.19
DDX4Q9NQI0 PEMT-202ENST00000395781 1050 ntTSL 2 BASIC28.74■■■□□ 2.19
DDX4Q9NQI0 TMEM151B-201ENST00000438774 1140 ntAPPRIS ALT2 TSL 3 BASIC28.74■■■□□ 2.19
DDX4Q9NQI0 PRMT5-228ENST00000627278 129 ntTSL 5 BASIC28.74■■■□□ 2.19
DDX4Q9NQI0 FKBP1A-211ENST00000618612 1518 ntTSL 1 (best) BASIC28.74■■■□□ 2.19
DDX4Q9NQI0 LTB4R-202ENST00000396782 1627 ntAPPRIS P1 TSL 1 (best) BASIC28.73■■■□□ 2.19
DDX4Q9NQI0 CST6-201ENST00000312134 759 ntAPPRIS P1 TSL 1 (best) BASIC28.73■■■□□ 2.19
DDX4Q9NQI0 UBALD2-201ENST00000327490 1593 ntAPPRIS P1 TSL 1 (best) BASIC28.73■■■□□ 2.19
DDX4Q9NQI0 RHEB-201ENST00000262187 2075 ntAPPRIS P1 TSL 1 (best) BASIC28.73■■■□□ 2.19
DDX4Q9NQI0 FP236240.1-201ENST00000619537 1116 ntAPPRIS P1 TSL 1 (best) BASIC28.72■■■□□ 2.19
DDX4Q9NQI0 PLEKHF1-201ENST00000436066 2084 ntAPPRIS P1 TSL 1 (best) BASIC28.71■■■□□ 2.19
DDX4Q9NQI0 UNCX-201ENST00000316333 2048 ntAPPRIS P1 TSL 1 (best) BASIC28.7■■■□□ 2.19
DDX4Q9NQI0 MED22-201ENST00000343730 1437 ntAPPRIS P4 TSL 1 (best) BASIC28.7■■■□□ 2.19
DDX4Q9NQI0 SCCPDH-201ENST00000366510 2503 ntAPPRIS P1 TSL 1 (best) BASIC28.7■■■□□ 2.19
DDX4Q9NQI0 RNF146-205ENST00000477776 762 ntTSL 3 BASIC28.7■■■□□ 2.18
DDX4Q9NQI0 TK2-216ENST00000564917 1156 ntTSL 3 BASIC28.7■■■□□ 2.18
DDX4Q9NQI0 FZD2-201ENST00000315323 2112 ntAPPRIS P1 BASIC28.69■■■□□ 2.18
DDX4Q9NQI0 ZEB1-AS1-205ENST00000605946 382 ntTSL 5 BASIC28.69■■■□□ 2.18
DDX4Q9NQI0 DGAT1-201ENST00000332324 1473 ntTSL 5 BASIC28.69■■■□□ 2.18
DDX4Q9NQI0 JMJD8-201ENST00000412368 2038 ntAPPRIS P2 TSL 1 (best) BASIC28.69■■■□□ 2.18
DDX4Q9NQI0 CRACR2B-201ENST00000450448 1663 ntTSL 1 (best) BASIC28.68■■■□□ 2.18
DDX4Q9NQI0 CARNMT1-201ENST00000376830 1012 ntTSL 1 (best) BASIC28.68■■■□□ 2.18
DDX4Q9NQI0 CDCA5-202ENST00000404147 1012 ntTSL 2 BASIC28.68■■■□□ 2.18
DDX4Q9NQI0 VAX1-202ENST00000369206 1723 ntAPPRIS P1 TSL 5 BASIC28.68■■■□□ 2.18
DDX4Q9NQI0 CTU1-201ENST00000421832 2087 ntAPPRIS P1 TSL 2 BASIC28.68■■■□□ 2.18
DDX4Q9NQI0 TMEM54-201ENST00000329151 871 ntTSL 1 (best) BASIC28.67■■■□□ 2.18
DDX4Q9NQI0 FAM136A-202ENST00000430566 885 ntTSL 3 BASIC28.67■■■□□ 2.18
DDX4Q9NQI0 AC239859.2-201ENST00000444165 318 ntBASIC28.67■■■□□ 2.18
DDX4Q9NQI0 ZNF302-211ENST00000509528 577 ntTSL 4 BASIC28.67■■■□□ 2.18
DDX4Q9NQI0 CTF1-202ENST00000395019 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC28.67■■■□□ 2.18
DDX4Q9NQI0 KRT18P10-201ENST00000388836 1287 ntBASIC28.66■■■□□ 2.18
DDX4Q9NQI0 CHKA-202ENST00000356135 1755 ntAPPRIS ALT2 TSL 1 (best) BASIC28.65■■■□□ 2.18
DDX4Q9NQI0 CNNM2-201ENST00000369875 2059 ntTSL 1 (best) BASIC28.65■■■□□ 2.18
DDX4Q9NQI0 AMH-201ENST00000221496 1821 ntAPPRIS P1 TSL 1 (best) BASIC28.65■■■□□ 2.18
DDX4Q9NQI0 LINC01925-201ENST00000579492 500 ntTSL 5 BASIC28.65■■■□□ 2.18
DDX4Q9NQI0 TMEM9-201ENST00000367330 1959 ntAPPRIS P3 TSL 1 (best) BASIC28.64■■■□□ 2.18
DDX4Q9NQI0 SH2B1-205ENST00000538342 1532 ntTSL 2 BASIC28.64■■■□□ 2.18
DDX4Q9NQI0 MMP25-AS1-209ENST00000576250 779 ntTSL 5 BASIC28.64■■■□□ 2.18
DDX4Q9NQI0 THA1P-201ENST00000590384 1145 ntBASIC28.64■■■□□ 2.18
DDX4Q9NQI0 U2AF1-204ENST00000459639 1675 ntTSL 1 (best) BASIC28.64■■■□□ 2.17
DDX4Q9NQI0 U2AF1L5-204ENST00000623375 1675 ntTSL 1 (best) BASIC28.64■■■□□ 2.17
DDX4Q9NQI0 CAMK2N2-201ENST00000296238 1362 ntAPPRIS P1 TSL 1 (best) BASIC28.63■■■□□ 2.17
DDX4Q9NQI0 NRM-201ENST00000259953 1755 ntAPPRIS P2 TSL 2 BASIC28.63■■■□□ 2.17
DDX4Q9NQI0 R3HCC1-201ENST00000265806 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC28.63■■■□□ 2.17
DDX4Q9NQI0 TMEM55B-201ENST00000250489 1961 ntAPPRIS P3 TSL 1 (best) BASIC28.63■■■□□ 2.17
DDX4Q9NQI0 CDK2AP1-201ENST00000261692 1625 ntAPPRIS P1 TSL 1 (best) BASIC28.63■■■□□ 2.17
DDX4Q9NQI0 EPM2A-208ENST00000618445 1694 ntTSL 1 (best) BASIC28.63■■■□□ 2.17
DDX4Q9NQI0 CITED4-201ENST00000372638 1316 ntAPPRIS P1 BASIC28.63■■■□□ 2.17
DDX4Q9NQI0 RABL6-204ENST00000371671 1580 ntAPPRIS ALT2 TSL 1 (best) BASIC28.62■■■□□ 2.17
DDX4Q9NQI0 PSMG1-201ENST00000331573 2154 ntAPPRIS P1 TSL 1 (best) BASIC28.62■■■□□ 2.17
DDX4Q9NQI0 FAM66E-202ENST00000533615 2087 ntTSL 2 BASIC28.62■■■□□ 2.17
DDX4Q9NQI0 GATA4-207ENST00000532059 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC28.62■■■□□ 2.17
DDX4Q9NQI0 C9orf47-202ENST00000375850 859 ntAPPRIS ALT2 TSL 3 BASIC28.62■■■□□ 2.17
DDX4Q9NQI0 HOXC-AS1-201ENST00000505700 548 ntTSL 2 BASIC28.62■■■□□ 2.17
DDX4Q9NQI0 TOMM40-203ENST00000426677 1725 ntAPPRIS P2 TSL 1 (best) BASIC28.62■■■□□ 2.17
DDX4Q9NQI0 C15orf59-201ENST00000379822 1342 ntAPPRIS P1 TSL 1 (best) BASIC28.62■■■□□ 2.17
DDX4Q9NQI0 PPM1J-201ENST00000309276 1863 ntAPPRIS P1 TSL 1 (best) BASIC28.61■■■□□ 2.17
DDX4Q9NQI0 AC078883.1-201ENST00000442417 950 ntTSL 3 BASIC28.61■■■□□ 2.17
DDX4Q9NQI0 PNCK-204ENST00000370150 1612 ntAPPRIS P1 TSL 5 BASIC28.61■■■□□ 2.17
DDX4Q9NQI0 AL022341.2-201ENST00000573609 1417 ntTSL 3 BASIC28.6■■■□□ 2.17
DDX4Q9NQI0 PIK3R2-207ENST00000617130 2187 ntAPPRIS P1 TSL 1 (best) BASIC28.6■■■□□ 2.17
DDX4Q9NQI0 MT1E-201ENST00000306061 704 ntAPPRIS P1 TSL 1 (best) BASIC28.6■■■□□ 2.17
DDX4Q9NQI0 ZFAND5-202ENST00000343431 1073 ntAPPRIS P1 TSL 5 BASIC28.6■■■□□ 2.17
DDX4Q9NQI0 S100A6-201ENST00000368719 665 ntAPPRIS P1 TSL 1 (best) BASIC28.6■■■□□ 2.17
DDX4Q9NQI0 AL592295.1-201ENST00000400984 884 ntBASIC28.6■■■□□ 2.17
DDX4Q9NQI0 AC131212.1-201ENST00000613771 668 ntBASIC28.6■■■□□ 2.17
DDX4Q9NQI0 R3HCC1-202ENST00000411463 1467 ntAPPRIS P5 TSL 5 BASIC28.59■■■□□ 2.17
DDX4Q9NQI0 PPP1R3F-205ENST00000495799 1537 ntTSL 1 (best) BASIC28.59■■■□□ 2.17
DDX4Q9NQI0 HMG20B-202ENST00000333651 1596 ntAPPRIS P1 TSL 1 (best) BASIC28.59■■■□□ 2.17
DDX4Q9NQI0 AL356441.2-201ENST00000443009 864 ntBASIC28.59■■■□□ 2.17
DDX4Q9NQI0 AC022616.5-201ENST00000518796 181 ntBASIC28.59■■■□□ 2.17
DDX4Q9NQI0 SNAI3-AS1-203ENST00000565633 829 ntTSL 5 BASIC28.59■■■□□ 2.17
DDX4Q9NQI0 CLEC2L-201ENST00000422142 1359 ntAPPRIS P2 TSL 3 BASIC28.59■■■□□ 2.17
DDX4Q9NQI0 DUSP22-201ENST00000344450 1485 ntTSL 1 (best) BASIC28.59■■■□□ 2.17
DDX4Q9NQI0 HMX2-201ENST00000339992 1628 ntAPPRIS P1 TSL 1 (best) BASIC28.58■■■□□ 2.17
DDX4Q9NQI0 C11orf80-210ENST00000527634 1666 ntAPPRIS ALT2 TSL 5 BASIC28.58■■■□□ 2.17
DDX4Q9NQI0 U2AF1-202ENST00000380276 940 ntAPPRIS ALT2 TSL 1 (best) BASIC28.58■■■□□ 2.17
DDX4Q9NQI0 SMUG1-203ENST00000401977 1082 ntAPPRIS P1 TSL 5 BASIC28.58■■■□□ 2.17
DDX4Q9NQI0 Z92544.1-202ENST00000571933 1220 ntBASIC28.58■■■□□ 2.17
DDX4Q9NQI0 TANGO2-214ENST00000447208 2086 ntTSL 3 BASIC28.58■■■□□ 2.17
DDX4Q9NQI0 IRAK1-205ENST00000429936 2127 ntTSL 5 BASIC28.58■■■□□ 2.17
DDX4Q9NQI0 SLC25A1-202ENST00000451283 1514 ntTSL 2 BASIC28.58■■■□□ 2.17
DDX4Q9NQI0 REEP6-201ENST00000233596 1794 ntAPPRIS P2 TSL 1 (best) BASIC28.57■■■□□ 2.16
Retrieved 100 of 98,524 protein–RNA pairs in 10.2 ms