Protein–RNA interactions for Protein: P0CW19

LIMS3, LIM and senescent cell antigen-like-containing domain protein 3, humanhuman

Predictions only

Length 117 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3P0CW19 DAZAP1-205ENST00000587079 2086 ntAPPRIS ALT1 TSL 5 BASIC21.37■■□□□ 1.01
LIMS3P0CW19 BMP2K-204ENST00000502871 3195 ntAPPRIS P3 TSL 1 (best) BASIC21.37■■□□□ 1.01
LIMS3P0CW19 AC133561.1-201ENST00000568600 2415 ntBASIC21.37■■□□□ 1.01
LIMS3P0CW19 IFNL4-201ENST00000606380 1637 ntAPPRIS P5 TSL 1 (best) BASIC21.37■■□□□ 1.01
LIMS3P0CW19 CCDC154-201ENST00000389176 2212 ntAPPRIS P5 TSL 5 BASIC21.36■■□□□ 1.01
LIMS3P0CW19 SLBP-206ENST00000489418 1977 ntAPPRIS P2 TSL 1 (best) BASIC21.36■■□□□ 1.01
LIMS3P0CW19 CDYL-203ENST00000397588 2184 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
LIMS3P0CW19 VAX1-202ENST00000369206 1723 ntAPPRIS P1 TSL 5 BASIC21.36■■□□□ 1.01
LIMS3P0CW19 AP000911.1-206ENST00000531938 711 ntTSL 3 BASIC21.36■■□□□ 1.01
LIMS3P0CW19 CRACR2B-201ENST00000450448 1663 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
LIMS3P0CW19 AP003733.4-201ENST00000623785 1697 ntBASIC21.36■■□□□ 1.01
LIMS3P0CW19 RITA1-203ENST00000552495 1898 ntTSL 2 BASIC21.36■■□□□ 1.01
LIMS3P0CW19 PCYT2-203ENST00000538936 5147 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
LIMS3P0CW19 PPP1R26-201ENST00000356818 4932 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
LIMS3P0CW19 SCARA5-204ENST00000524352 1945 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
LIMS3P0CW19 EPCAM-201ENST00000263735 1724 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
LIMS3P0CW19 USP2-204ENST00000525735 1704 ntAPPRIS ALT1 TSL 1 (best) BASIC21.35■■□□□ 1.01
LIMS3P0CW19 VPS53-211ENST00000571805 2356 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
LIMS3P0CW19 BBC3-203ENST00000439096 1838 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
LIMS3P0CW19 BOD1-201ENST00000285908 1286 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
LIMS3P0CW19 BOD1-206ENST00000480951 814 ntTSL 2 BASIC21.35■■□□□ 1.01
LIMS3P0CW19 FAM78B-201ENST00000338353 1597 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
LIMS3P0CW19 RAPGEF1-203ENST00000372195 6256 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
LIMS3P0CW19 LAT-201ENST00000354453 1713 ntAPPRIS ALT2 TSL 5 BASIC21.35■■□□□ 1.01
LIMS3P0CW19 TTLL11-202ENST00000373776 2012 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
LIMS3P0CW19 TNFSF12-TNFSF13-201ENST00000293826 1816 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
LIMS3P0CW19 BMP6-201ENST00000283147 2780 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
LIMS3P0CW19 MTNR1A-201ENST00000307161 1289 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
LIMS3P0CW19 AL162393.1-201ENST00000437852 946 ntBASIC21.34■■□□□ 1.01
LIMS3P0CW19 AC004080.1-201ENST00000523608 757 ntTSL 2 BASIC21.34■■□□□ 1.01
LIMS3P0CW19 SLC35B2-202ENST00000393812 2043 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
LIMS3P0CW19 MSX2-201ENST00000239243 2241 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
LIMS3P0CW19 LSM8-203ENST00000422760 1920 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
LIMS3P0CW19 E2F5-202ENST00000416274 1728 ntAPPRIS P4 TSL 1 (best) BASIC21.33■■□□□ 1.01
LIMS3P0CW19 C11orf95-204ENST00000546282 390 ntTSL 3 BASIC21.33■■□□□ 1.01
LIMS3P0CW19 FBXO45-201ENST00000311630 5899 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
LIMS3P0CW19 CASK-201ENST00000378154 2494 ntTSL 5 BASIC21.33■■□□□ 1
LIMS3P0CW19 KLC1-205ENST00000380038 2322 ntTSL 2 BASIC21.33■■□□□ 1
LIMS3P0CW19 PANK2-201ENST00000316562 2280 ntAPPRIS P2 TSL 1 (best) BASIC21.32■■□□□ 1
LIMS3P0CW19 CCNG2-201ENST00000316355 5526 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
LIMS3P0CW19 SYNGR3-201ENST00000248121 2051 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
LIMS3P0CW19 COX4I1-203ENST00000562336 873 ntAPPRIS P1 TSL 5 BASIC21.32■■□□□ 1
LIMS3P0CW19 C5orf58-204ENST00000521850 2113 ntAPPRIS ALT2 TSL 1 (best) BASIC21.32■■□□□ 1
LIMS3P0CW19 ZAR1-201ENST00000327939 1460 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
LIMS3P0CW19 ST3GAL5-268ENST00000640982 2465 ntAPPRIS ALT2 TSL 5 BASIC21.31■■□□□ 1
LIMS3P0CW19 PTOV1-201ENST00000391842 1875 ntAPPRIS P1 TSL 5 BASIC21.31■■□□□ 1
LIMS3P0CW19 TMIE-201ENST00000326431 1824 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
LIMS3P0CW19 GP1BB-201ENST00000366425 1553 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
LIMS3P0CW19 DCUN1D2-208ENST00000478244 2045 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
LIMS3P0CW19 HORMAD2-201ENST00000336726 2187 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
LIMS3P0CW19 UBTD1-201ENST00000370664 1706 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
LIMS3P0CW19 DUX4L29-201ENST00000425409 679 ntBASIC21.3■■□□□ 1
LIMS3P0CW19 STARD10-220ENST00000545082 1085 ntTSL 3 BASIC21.3■■□□□ 1
LIMS3P0CW19 TST-202ENST00000403892 1797 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
LIMS3P0CW19 SAMD4B-208ENST00000598913 2877 ntAPPRIS ALT1 TSL 1 (best) BASIC21.3■■□□□ 1
LIMS3P0CW19 LACTBL1-202ENST00000618559 1500 ntAPPRIS ALT2 TSL 5 BASIC21.29■■□□□ 1
LIMS3P0CW19 AL359504.2-201ENST00000605506 1601 ntBASIC21.29■■□□□ 1
LIMS3P0CW19 EPS8L1-205ENST00000586329 2130 ntTSL 5 BASIC21.29■■□□□ 1
LIMS3P0CW19 RAB40B-201ENST00000269347 2189 ntTSL 2 BASIC21.29■■□□□ 1
LIMS3P0CW19 FEZ2-203ENST00000379245 2097 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
LIMS3P0CW19 SLC6A10P-202ENST00000431994 2058 ntBASIC21.29■■□□□ 1
LIMS3P0CW19 CHML-204ENST00000638121 920 ntTSL 2 BASIC21.29■■□□□ 1
LIMS3P0CW19 MIR219A2-201ENST00000608502 1504 ntBASIC21.29■■□□□ 1
LIMS3P0CW19 ZBTB45-205ENST00000600990 2159 ntAPPRIS P1 TSL 5 BASIC21.29■■□□□ 1
LIMS3P0CW19 CPOX-201ENST00000264193 2825 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
LIMS3P0CW19 PHC2-202ENST00000373418 2550 ntAPPRIS ALT2 TSL 1 (best) BASIC21.28■■□□□ 1
LIMS3P0CW19 ZFYVE28-202ENST00000503000 1874 ntTSL 1 (best) BASIC21.28■■□□□ 1
LIMS3P0CW19 IGFBP7-201ENST00000295666 1427 ntAPPRIS P3 TSL 1 (best) BASIC21.28■■□□□ 1
LIMS3P0CW19 ZDHHC1-201ENST00000348579 2047 ntAPPRIS P2 TSL 1 (best) BASIC21.28■■□□□ 1
LIMS3P0CW19 GFOD1-204ENST00000603223 2388 ntTSL 2 BASIC21.28■■□□□ 1
LIMS3P0CW19 TMEM203-201ENST00000343666 1557 ntAPPRIS P1 BASIC21.27■■□□□ 1
LIMS3P0CW19 IQANK1-201ENST00000527139 1803 ntAPPRIS P1 TSL 5 BASIC21.27■■□□□ 1
LIMS3P0CW19 GET4-201ENST00000265857 2090 ntAPPRIS P2 TSL 1 (best) BASIC21.27■■□□□ 1
LIMS3P0CW19 LSM6-202ENST00000502781 1352 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
LIMS3P0CW19 TSPAN4-207ENST00000397411 1025 ntAPPRIS P1 TSL 2 BASIC21.27■■□□□ 1
LIMS3P0CW19 AC104109.3-201ENST00000519718 483 ntAPPRIS P1 TSL 5 BASIC21.27■■□□□ 1
LIMS3P0CW19 RHOC-202ENST00000339083 1418 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
LIMS3P0CW19 UNC50-204ENST00000409975 2172 ntTSL 1 (best) BASIC21.27■■□□□ 1
LIMS3P0CW19 LINC00543-201ENST00000567234 1845 ntBASIC21.27■□□□□ 0.99
LIMS3P0CW19 AC097639.1-201ENST00000565519 1891 ntBASIC21.26■□□□□ 0.99
LIMS3P0CW19 ARHGAP29-202ENST00000370217 2043 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
LIMS3P0CW19 AC012676.1-201ENST00000574705 1949 ntBASIC21.26■□□□□ 0.99
LIMS3P0CW19 TRAP1-202ENST00000538171 2052 ntTSL 2 BASIC21.26■□□□□ 0.99
LIMS3P0CW19 ALDH16A1-203ENST00000540132 2174 ntTSL 2 BASIC21.26■□□□□ 0.99
LIMS3P0CW19 SH2B1-205ENST00000538342 1532 ntTSL 2 BASIC21.25■□□□□ 0.99
LIMS3P0CW19 AC116407.1-201ENST00000398832 1599 ntTSL 2 BASIC21.25■□□□□ 0.99
LIMS3P0CW19 TMSB15B-202ENST00000436583 2186 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
LIMS3P0CW19 FKBP1A-210ENST00000614856 562 ntTSL 2 BASIC21.25■□□□□ 0.99
LIMS3P0CW19 TMED2-201ENST00000262225 2560 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
LIMS3P0CW19 SIAH2-201ENST00000312960 2517 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
LIMS3P0CW19 HSPBP1-201ENST00000255631 1768 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
LIMS3P0CW19 AC148477.6-201ENST00000623746 465 ntBASIC21.24■□□□□ 0.99
LIMS3P0CW19 AC105219.1-201ENST00000531565 1963 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
LIMS3P0CW19 C15orf59-201ENST00000379822 1342 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
LIMS3P0CW19 CBARP-202ENST00000382477 2453 ntAPPRIS ALT2 TSL 5 BASIC21.23■□□□□ 0.99
LIMS3P0CW19 AL359258.2-201ENST00000564063 1566 ntBASIC21.23■□□□□ 0.99
LIMS3P0CW19 YBX2-201ENST00000007699 1590 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
LIMS3P0CW19 FAM21EP-202ENST00000456967 2177 ntTSL 2 BASIC21.23■□□□□ 0.99
LIMS3P0CW19 CACNG6-202ENST00000346968 645 ntTSL 5 BASIC21.23■□□□□ 0.99
LIMS3P0CW19 NME2-202ENST00000393190 866 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
Retrieved 100 of 98,524 protein–RNA pairs in 35.7 ms