Protein–RNA interactions for Protein: O15347

HMGB3, High mobility group protein B3, humanhuman

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3O15347 AFDN-202ENST00000351017 5823 ntTSL 5 BASIC19.25■□□□□ 0.67
HMGB3O15347 C21orf2-202ENST00000339818 2233 ntAPPRIS P3 TSL 1 (best) BASIC19.25■□□□□ 0.67
HMGB3O15347 YRDC-201ENST00000373044 1826 ntAPPRIS P1 TSL 1 (best) BASIC19.25■□□□□ 0.67
HMGB3O15347 KANSL1-202ENST00000432791 5343 ntAPPRIS P3 TSL 1 (best) BASIC19.25■□□□□ 0.67
HMGB3O15347 CPOX-201ENST00000264193 2825 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
HMGB3O15347 FLT1-207ENST00000615840 6453 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
HMGB3O15347 NR2F2-201ENST00000394166 5275 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
HMGB3O15347 TMEM150A-202ENST00000334462 1518 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
HMGB3O15347 NAB1-202ENST00000409581 2360 ntAPPRIS P3 TSL 2 BASIC19.24■□□□□ 0.67
HMGB3O15347 TARSL2-207ENST00000615656 2356 ntAPPRIS ALT2 TSL 5 BASIC19.24■□□□□ 0.67
HMGB3O15347 RARA-202ENST00000394081 2285 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
HMGB3O15347 ATP5G2-208ENST00000552242 1950 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
HMGB3O15347 BIN1-206ENST00000352848 2209 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
HMGB3O15347 AC068152.1-210ENST00000574741 836 ntTSL 3 BASIC19.23■□□□□ 0.67
HMGB3O15347 USP36-203ENST00000542802 6063 ntAPPRIS P2 TSL 1 (best) BASIC19.23■□□□□ 0.67
HMGB3O15347 WRNIP1-205ENST00000618555 2651 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
HMGB3O15347 SYT7-203ENST00000539008 2061 ntTSL 5 BASIC19.23■□□□□ 0.67
HMGB3O15347 AL391121.1-201ENST00000607967 1349 ntBASIC19.23■□□□□ 0.67
HMGB3O15347 CACNA1A-214ENST00000614285 8410 ntAPPRIS ALT2 TSL 5 BASIC19.23■□□□□ 0.67
HMGB3O15347 RARA-203ENST00000394086 2008 ntTSL 2 BASIC19.22■□□□□ 0.67
HMGB3O15347 TBL2-222ENST00000610724 2165 ntTSL 5 BASIC19.22■□□□□ 0.67
HMGB3O15347 VEGFA-231ENST00000640499 1188 ntAPPRIS P3 TSL 1 (best) BASIC19.22■□□□□ 0.67
HMGB3O15347 ITM2C-203ENST00000335005 1889 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
HMGB3O15347 VSTM2L-202ENST00000373461 1959 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
HMGB3O15347 GTF3C4-202ENST00000483873 1417 ntTSL 3 BASIC19.21■□□□□ 0.67
HMGB3O15347 SNF8-202ENST00000502492 2319 ntAPPRIS P3 TSL 1 (best) BASIC19.21■□□□□ 0.67
HMGB3O15347 MED17-227ENST00000640521 2047 ntTSL 5 BASIC19.21■□□□□ 0.67
HMGB3O15347 PTPRJ-208ENST00000615445 4773 ntAPPRIS ALT2 TSL 5 BASIC19.21■□□□□ 0.67
HMGB3O15347 C4orf32-201ENST00000309733 8901 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
HMGB3O15347 GTF2E2-201ENST00000355904 1762 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
HMGB3O15347 THRA-209ENST00000584985 2421 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
HMGB3O15347 CRTAP-202ENST00000449224 1811 ntAPPRIS ALT2 TSL 2 BASIC19.21■□□□□ 0.67
HMGB3O15347 TSPAN10-203ENST00000574882 1837 ntAPPRIS P2 TSL 1 (best) BASIC19.21■□□□□ 0.67
HMGB3O15347 CAPN10-207ENST00000391984 2644 ntAPPRIS P2 TSL 1 (best) BASIC19.21■□□□□ 0.66
HMGB3O15347 RMND5A-201ENST00000283632 6301 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
HMGB3O15347 ROR1-202ENST00000371080 2305 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
HMGB3O15347 TMEM202-AS1-202ENST00000565181 2325 ntBASIC19.2■□□□□ 0.66
HMGB3O15347 KRT72-201ENST00000293745 2015 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
HMGB3O15347 HEBP2-204ENST00000607197 10014 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
HMGB3O15347 FUS-202ENST00000380244 1818 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
HMGB3O15347 CDC42BPB-201ENST00000361246 6758 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
HMGB3O15347 NBPF9-209ENST00000621645 5632 ntAPPRIS ALT2 TSL 2 BASIC19.2■□□□□ 0.66
HMGB3O15347 KCNQ5-207ENST00000403813 6539 ntAPPRIS ALT2 TSL 5 BASIC19.2■□□□□ 0.66
HMGB3O15347 SMDT1-201ENST00000331479 1567 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
HMGB3O15347 AC133561.1-201ENST00000568600 2415 ntBASIC19.19■□□□□ 0.66
HMGB3O15347 STOML1-202ENST00000316911 1891 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
HMGB3O15347 PYCR1-202ENST00000337943 1890 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
HMGB3O15347 SPTBN4-207ENST00000595535 6105 ntTSL 5 BASIC19.19■□□□□ 0.66
HMGB3O15347 PREB-202ENST00000406567 1910 ntTSL 5 BASIC19.19■□□□□ 0.66
HMGB3O15347 AC142472.1-201ENST00000612013 1741 ntBASIC19.19■□□□□ 0.66
HMGB3O15347 ANKRD54-201ENST00000215941 2184 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
HMGB3O15347 TMEM44-202ENST00000347147 2245 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
HMGB3O15347 AC142381.3-201ENST00000568208 1670 ntBASIC19.18■□□□□ 0.66
HMGB3O15347 LANCL3-203ENST00000614025 1469 ntTSL 2 BASIC19.18■□□□□ 0.66
HMGB3O15347 PDPK1-204ENST00000441549 1729 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
HMGB3O15347 SLC35A2-207ENST00000445167 1739 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
HMGB3O15347 ATP5A1-220ENST00000593152 2258 ntTSL 2 BASIC19.18■□□□□ 0.66
HMGB3O15347 CD2AP-201ENST00000359314 5412 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
HMGB3O15347 ANKRD16-201ENST00000191063 1567 ntTSL 3 BASIC19.18■□□□□ 0.66
HMGB3O15347 MYH14-206ENST00000596571 5988 ntAPPRIS ALT2 TSL 5 BASIC19.18■□□□□ 0.66
HMGB3O15347 ZNF470-206ENST00000601902 1640 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
HMGB3O15347 LTBP3-201ENST00000301873 4443 ntAPPRIS ALT2 TSL 2 BASIC19.18■□□□□ 0.66
HMGB3O15347 SRPK3-205ENST00000393786 1900 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
HMGB3O15347 CAPZB-203ENST00000375142 1686 ntAPPRIS ALT1 TSL 5 BASIC19.17■□□□□ 0.66
HMGB3O15347 WIPI2-204ENST00000404704 1663 ntTSL 5 BASIC19.17■□□□□ 0.66
HMGB3O15347 ST3GAL5-268ENST00000640982 2465 ntAPPRIS ALT2 TSL 5 BASIC19.17■□□□□ 0.66
HMGB3O15347 RIMKLB-205ENST00000535829 2236 ntAPPRIS P1 TSL 2 BASIC19.17■□□□□ 0.66
HMGB3O15347 MARCH8-201ENST00000319836 5272 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
HMGB3O15347 R3HCC1-201ENST00000265806 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
HMGB3O15347 FBXL6-201ENST00000331890 1785 ntAPPRIS P3 TSL 1 (best) BASIC19.17■□□□□ 0.66
HMGB3O15347 SNX21-204ENST00000372542 1824 ntAPPRIS P1 TSL 2 BASIC19.17■□□□□ 0.66
HMGB3O15347 JMJD8-202ENST00000562111 823 ntTSL 2 BASIC19.17■□□□□ 0.66
HMGB3O15347 FAM189B-210ENST00000621094 1335 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
HMGB3O15347 FBXL20-203ENST00000577399 1620 ntTSL 5 BASIC19.17■□□□□ 0.66
HMGB3O15347 SSBP4-201ENST00000270061 1768 ntAPPRIS P3 TSL 1 (best) BASIC19.16■□□□□ 0.66
HMGB3O15347 ZNF767P-202ENST00000472212 2100 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
HMGB3O15347 KCNMB4-201ENST00000258111 4731 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
HMGB3O15347 BSPRY-201ENST00000374183 2339 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
HMGB3O15347 NTN3-201ENST00000293973 1986 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
HMGB3O15347 C8orf58-201ENST00000289989 2016 ntAPPRIS P3 TSL 5 BASIC19.16■□□□□ 0.66
HMGB3O15347 KCTD5-201ENST00000301738 2482 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
HMGB3O15347 MEIS3-201ENST00000331559 2104 ntAPPRIS ALT2 TSL 5 BASIC19.16■□□□□ 0.66
HMGB3O15347 KLHDC10-201ENST00000335420 6437 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
HMGB3O15347 C2CD4D-201ENST00000454109 1757 ntAPPRIS P1 TSL 2 BASIC19.16■□□□□ 0.66
HMGB3O15347 SAE1-209ENST00000598840 1831 ntTSL 5 BASIC19.16■□□□□ 0.66
HMGB3O15347 LINC01578-209ENST00000557682 2683 ntTSL 2 BASIC19.16■□□□□ 0.66
HMGB3O15347 APBA3-201ENST00000316757 2075 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
HMGB3O15347 SNX10-207ENST00000446848 2613 ntAPPRIS P2 TSL 1 (best) BASIC19.15■□□□□ 0.66
HMGB3O15347 ATP5G2-201ENST00000338662 1792 ntTSL 2 BASIC19.15■□□□□ 0.66
HMGB3O15347 MCTP1-218ENST00000515393 5396 ntAPPRIS P3 TSL 1 (best) BASIC19.15■□□□□ 0.66
HMGB3O15347 FSTL1-201ENST00000295633 5943 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
HMGB3O15347 BEND4-202ENST00000504360 8692 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
HMGB3O15347 AC138932.3-201ENST00000567634 1902 ntBASIC19.15■□□□□ 0.66
HMGB3O15347 ATP6V0A2-201ENST00000330342 6542 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
HMGB3O15347 SSBP3-202ENST00000357475 1533 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
HMGB3O15347 GKAP1-202ENST00000376365 1511 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
HMGB3O15347 CCDC154-201ENST00000389176 2212 ntAPPRIS P5 TSL 5 BASIC19.15■□□□□ 0.66
HMGB3O15347 RYK-209ENST00000623711 2934 ntAPPRIS ALT2 TSL 1 (best) BASIC19.14■□□□□ 0.66
HMGB3O15347 BIN1-207ENST00000357970 2497 ntTSL 1 (best) BASIC19.14■□□□□ 0.66
HMGB3O15347 BRD3-202ENST00000371834 2529 ntAPPRIS ALT2 TSL 1 (best) BASIC19.14■□□□□ 0.65
Retrieved 100 of 98,524 protein–RNA pairs in 23.8 ms