Protein–RNA interactions for Protein: A6NHR9

SMCHD1, Structural maintenance of chromosomes flexible hinge domain-containing protein 1, humanhuman

Predictions only

Length 2,005 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1A6NHR9 PAPOLA-225ENST00000557471 1421 ntTSL 1 (best) BASIC27.8■■■□□ 2.04
SMCHD1A6NHR9 RBFA-201ENST00000262197 1219 ntTSL 1 (best) BASIC27.8■■■□□ 2.04
SMCHD1A6NHR9 ZNF302-211ENST00000509528 577 ntTSL 4 BASIC27.8■■■□□ 2.04
SMCHD1A6NHR9 PKNOX2-AS1-201ENST00000532316 586 ntTSL 3 BASIC27.8■■■□□ 2.04
SMCHD1A6NHR9 NSMCE4A-202ENST00000369023 1394 ntAPPRIS P1 TSL 1 (best) BASIC27.8■■■□□ 2.04
SMCHD1A6NHR9 HOXB3-201ENST00000311626 2642 ntAPPRIS P1 TSL 1 (best) BASIC27.8■■■□□ 2.04
SMCHD1A6NHR9 C11orf80-210ENST00000527634 1666 ntAPPRIS ALT2 TSL 5 BASIC27.79■■■□□ 2.04
SMCHD1A6NHR9 YIF1A-201ENST00000359461 943 ntTSL 2 BASIC27.79■■■□□ 2.04
SMCHD1A6NHR9 YIF1A-203ENST00000376901 1124 ntAPPRIS P1 TSL 1 (best) BASIC27.79■■■□□ 2.04
SMCHD1A6NHR9 PEMT-202ENST00000395781 1050 ntTSL 2 BASIC27.79■■■□□ 2.04
SMCHD1A6NHR9 UBE2E3-202ENST00000410062 1570 ntAPPRIS P1 TSL 1 (best) BASIC27.79■■■□□ 2.04
SMCHD1A6NHR9 RAB3IL1-202ENST00000394836 2284 ntAPPRIS P1 TSL 1 (best) BASIC27.79■■■□□ 2.04
SMCHD1A6NHR9 CDH24-206ENST00000610348 2037 ntTSL 1 (best) BASIC27.79■■■□□ 2.04
SMCHD1A6NHR9 PNMT-201ENST00000269582 1253 ntAPPRIS P1 TSL 1 (best) BASIC27.79■■■□□ 2.04
SMCHD1A6NHR9 YBX1P4-201ENST00000392794 808 ntBASIC27.79■■■□□ 2.04
SMCHD1A6NHR9 MTX2-204ENST00000443241 799 ntTSL 3 BASIC27.79■■■□□ 2.04
SMCHD1A6NHR9 PKIG-206ENST00000372892 1338 ntAPPRIS P1 TSL 2 BASIC27.78■■■□□ 2.04
SMCHD1A6NHR9 RHOF-203ENST00000537171 1485 ntTSL 1 (best) BASIC27.78■■■□□ 2.04
SMCHD1A6NHR9 NKPD1-202ENST00000589776 1950 ntAPPRIS P1 BASIC27.78■■■□□ 2.04
SMCHD1A6NHR9 DAZAP1-202ENST00000336761 2290 ntTSL 5 BASIC27.78■■■□□ 2.04
SMCHD1A6NHR9 FP236240.1-201ENST00000619537 1116 ntAPPRIS P1 TSL 1 (best) BASIC27.77■■■□□ 2.04
SMCHD1A6NHR9 PRMT5-228ENST00000627278 129 ntTSL 5 BASIC27.77■■■□□ 2.04
SMCHD1A6NHR9 DACT2-202ENST00000366796 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC27.77■■■□□ 2.04
SMCHD1A6NHR9 MYDGF-201ENST00000262947 1018 ntAPPRIS P1 TSL 1 (best) BASIC27.77■■■□□ 2.04
SMCHD1A6NHR9 CDKN2B-202ENST00000380142 859 ntTSL 1 (best) BASIC27.77■■■□□ 2.04
SMCHD1A6NHR9 ZDHHC16-204ENST00000370842 1877 ntAPPRIS ALT1 TSL 5 BASIC27.77■■■□□ 2.04
SMCHD1A6NHR9 NR6A1-203ENST00000416460 1898 ntAPPRIS ALT2 TSL 1 (best) BASIC27.77■■■□□ 2.04
SMCHD1A6NHR9 NRM-201ENST00000259953 1755 ntAPPRIS P2 TSL 2 BASIC27.76■■■□□ 2.04
SMCHD1A6NHR9 EPM2A-208ENST00000618445 1694 ntTSL 1 (best) BASIC27.76■■■□□ 2.04
SMCHD1A6NHR9 PLSCR3-202ENST00000535512 2067 ntAPPRIS P1 TSL 1 (best) BASIC27.76■■■□□ 2.03
SMCHD1A6NHR9 CENPX-202ENST00000392359 805 ntAPPRIS P1 TSL 2 BASIC27.76■■■□□ 2.03
SMCHD1A6NHR9 FXYD7-204ENST00000588265 636 ntTSL 2 BASIC27.76■■■□□ 2.03
SMCHD1A6NHR9 CASTOR2-201ENST00000616305 1257 ntAPPRIS P1 TSL 1 (best) BASIC27.76■■■□□ 2.03
SMCHD1A6NHR9 R3HCC1-201ENST00000265806 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC27.76■■■□□ 2.03
SMCHD1A6NHR9 IRAK1-205ENST00000429936 2127 ntTSL 5 BASIC27.76■■■□□ 2.03
SMCHD1A6NHR9 ZDHHC16-207ENST00000393760 2014 ntAPPRIS P4 TSL 1 (best) BASIC27.76■■■□□ 2.03
SMCHD1A6NHR9 C15orf59-201ENST00000379822 1342 ntAPPRIS P1 TSL 1 (best) BASIC27.75■■■□□ 2.03
SMCHD1A6NHR9 AP003068.2-202ENST00000526623 1662 ntTSL 2 BASIC27.75■■■□□ 2.03
SMCHD1A6NHR9 RFLNA-202ENST00000338359 652 ntAPPRIS P2 TSL 1 (best) BASIC27.75■■■□□ 2.03
SMCHD1A6NHR9 CASP9-202ENST00000348549 1621 ntTSL 1 (best) BASIC27.75■■■□□ 2.03
SMCHD1A6NHR9 LTB4R-202ENST00000396782 1627 ntAPPRIS P1 TSL 1 (best) BASIC27.75■■■□□ 2.03
SMCHD1A6NHR9 FLT1-202ENST00000539099 1911 ntTSL 1 (best) BASIC27.75■■■□□ 2.03
SMCHD1A6NHR9 ECHDC3-201ENST00000379215 1649 ntAPPRIS P1 TSL 1 (best) BASIC27.75■■■□□ 2.03
SMCHD1A6NHR9 FOXP1-201ENST00000318779 843 ntTSL 1 (best) BASIC27.75■■■□□ 2.03
SMCHD1A6NHR9 MLST8-219ENST00000565250 1588 ntAPPRIS P3 TSL 3 BASIC27.74■■■□□ 2.03
SMCHD1A6NHR9 RPS2P7-201ENST00000447334 885 ntBASIC27.74■■■□□ 2.03
SMCHD1A6NHR9 NRG2-203ENST00000340391 1944 ntTSL 5 BASIC27.74■■■□□ 2.03
SMCHD1A6NHR9 CRACR2B-201ENST00000450448 1663 ntTSL 1 (best) BASIC27.74■■■□□ 2.03
SMCHD1A6NHR9 AL160276.1-201ENST00000636672 1312 ntAPPRIS P1 TSL 5 BASIC27.74■■■□□ 2.03
SMCHD1A6NHR9 THA1P-201ENST00000590384 1145 ntBASIC27.74■■■□□ 2.03
SMCHD1A6NHR9 RCOR3-202ENST00000367006 2525 ntTSL 1 (best) BASIC27.73■■■□□ 2.03
SMCHD1A6NHR9 COL13A1-203ENST00000398969 2267 ntAPPRIS ALT2 TSL 5 BASIC27.73■■■□□ 2.03
SMCHD1A6NHR9 VAX1-202ENST00000369206 1723 ntAPPRIS P1 TSL 5 BASIC27.73■■■□□ 2.03
SMCHD1A6NHR9 EVA1C-201ENST00000300255 1998 ntAPPRIS P3 TSL 1 (best) BASIC27.73■■■□□ 2.03
SMCHD1A6NHR9 PRR7-204ENST00000510492 1285 ntAPPRIS P1 TSL 1 (best) BASIC27.73■■■□□ 2.03
SMCHD1A6NHR9 PRTG-204ENST00000561292 833 ntTSL 3 BASIC27.73■■■□□ 2.03
SMCHD1A6NHR9 CCER2-201ENST00000571838 1057 ntAPPRIS P2 TSL 5 BASIC27.73■■■□□ 2.03
SMCHD1A6NHR9 AC018755.3-202ENST00000596210 929 ntBASIC27.73■■■□□ 2.03
SMCHD1A6NHR9 BOD1-202ENST00000311086 1562 ntAPPRIS P1 TSL 1 (best) BASIC27.73■■■□□ 2.03
SMCHD1A6NHR9 VSTM2A-202ENST00000402613 1076 ntTSL 2 BASIC27.72■■■□□ 2.03
SMCHD1A6NHR9 AL121906.1-201ENST00000606866 440 ntTSL 3 BASIC27.72■■■□□ 2.03
SMCHD1A6NHR9 TMEM171-202ENST00000454765 1535 ntAPPRIS P3 TSL 1 (best) BASIC27.72■■■□□ 2.03
SMCHD1A6NHR9 RINL-208ENST00000598904 1846 ntAPPRIS P3 TSL 5 BASIC27.72■■■□□ 2.03
SMCHD1A6NHR9 CST6-201ENST00000312134 759 ntAPPRIS P1 TSL 1 (best) BASIC27.72■■■□□ 2.03
SMCHD1A6NHR9 KCNJ4-201ENST00000303592 2065 ntAPPRIS P1 TSL 1 (best) BASIC27.71■■■□□ 2.03
SMCHD1A6NHR9 MTERF3-204ENST00000523821 1529 ntTSL 1 (best) BASIC27.71■■■□□ 2.03
SMCHD1A6NHR9 ZIC2-201ENST00000376335 2983 ntAPPRIS P1 TSL 1 (best) BASIC27.71■■■□□ 2.03
SMCHD1A6NHR9 CAMKK1-201ENST00000158166 2459 ntTSL 1 (best) BASIC27.71■■■□□ 2.03
SMCHD1A6NHR9 HERC2P9-201ENST00000507787 1023 ntTSL 1 (best) BASIC27.7■■■□□ 2.03
SMCHD1A6NHR9 ZEB1-AS1-205ENST00000605946 382 ntTSL 5 BASIC27.7■■■□□ 2.03
SMCHD1A6NHR9 AL590094.1-201ENST00000635581 706 ntTSL 2 BASIC27.7■■■□□ 2.03
SMCHD1A6NHR9 UBALD2-201ENST00000327490 1593 ntAPPRIS P1 TSL 1 (best) BASIC27.7■■■□□ 2.03
SMCHD1A6NHR9 OR2A1-AS1-204ENST00000470435 602 ntBASIC27.7■■■□□ 2.02
SMCHD1A6NHR9 TSPAN10-203ENST00000574882 1837 ntAPPRIS P2 TSL 1 (best) BASIC27.69■■■□□ 2.02
SMCHD1A6NHR9 PNCK-204ENST00000370150 1612 ntAPPRIS P1 TSL 5 BASIC27.69■■■□□ 2.02
SMCHD1A6NHR9 SLC52A2-208ENST00000527078 1790 ntAPPRIS P1 TSL 5 BASIC27.69■■■□□ 2.02
SMCHD1A6NHR9 GALR2-201ENST00000329003 1364 ntAPPRIS P1 TSL 1 (best) BASIC27.69■■■□□ 2.02
SMCHD1A6NHR9 TMEM170A-202ENST00000561878 1072 ntAPPRIS P1 TSL 1 (best) BASIC27.69■■■□□ 2.02
SMCHD1A6NHR9 AC009163.4-201ENST00000567194 530 ntAPPRIS P1 TSL 2 BASIC27.69■■■□□ 2.02
SMCHD1A6NHR9 SSX2IP-209ENST00000603677 1149 ntTSL 1 (best) BASIC27.69■■■□□ 2.02
SMCHD1A6NHR9 WDR38-203ENST00000618744 1270 ntTSL 1 (best) BASIC27.69■■■□□ 2.02
SMCHD1A6NHR9 AKAP8L-208ENST00000595465 1933 ntTSL 2 BASIC27.69■■■□□ 2.02
SMCHD1A6NHR9 AMH-201ENST00000221496 1821 ntAPPRIS P1 TSL 1 (best) BASIC27.69■■■□□ 2.02
SMCHD1A6NHR9 AC073934.1-201ENST00000490314 495 ntTSL 4 BASIC27.68■■■□□ 2.02
SMCHD1A6NHR9 TSPAN10-204ENST00000611590 1068 ntAPPRIS ALT2 TSL 1 (best) BASIC27.68■■■□□ 2.02
SMCHD1A6NHR9 BTBD6-204ENST00000463376 2195 ntAPPRIS ALT2 TSL 2 BASIC27.68■■■□□ 2.02
SMCHD1A6NHR9 FRAT2-201ENST00000371019 2213 ntAPPRIS P1 BASIC27.68■■■□□ 2.02
SMCHD1A6NHR9 C2CD4D-201ENST00000454109 1757 ntAPPRIS P1 TSL 2 BASIC27.67■■■□□ 2.02
SMCHD1A6NHR9 AC010913.1-201ENST00000608612 420 ntTSL 2 BASIC27.67■■■□□ 2.02
SMCHD1A6NHR9 TOP1MT-208ENST00000519148 1868 ntTSL 2 BASIC27.67■■■□□ 2.02
SMCHD1A6NHR9 HSBP1L1-201ENST00000451882 771 ntAPPRIS P1 TSL 1 (best) BASIC27.67■■■□□ 2.02
SMCHD1A6NHR9 LAT-217ENST00000630764 610 ntAPPRIS ALT2 TSL 5 BASIC27.67■■■□□ 2.02
SMCHD1A6NHR9 RBFOX2-209ENST00000438146 1356 ntAPPRIS P3 TSL 1 (best) BASIC27.66■■■□□ 2.02
SMCHD1A6NHR9 HAUS7-211ENST00000626181 414 ntAPPRIS ALT2 TSL 5 BASIC27.66■■■□□ 2.02
SMCHD1A6NHR9 JMJD8-201ENST00000412368 2038 ntAPPRIS P2 TSL 1 (best) BASIC27.66■■■□□ 2.02
SMCHD1A6NHR9 PPP4C-214ENST00000627746 1301 ntTSL 5 BASIC27.66■■■□□ 2.02
SMCHD1A6NHR9 EVA1C-203ENST00000401402 1558 ntTSL 5 BASIC27.66■■■□□ 2.02
SMCHD1A6NHR9 CTF1-201ENST00000279804 1664 ntAPPRIS P3 TSL 1 (best) BASIC27.65■■■□□ 2.02
SMCHD1A6NHR9 GGA1-204ENST00000381756 2107 ntTSL 1 (best) BASIC27.65■■■□□ 2.02
SMCHD1A6NHR9 PICK1-201ENST00000356976 2055 ntAPPRIS P1 TSL 1 (best) BASIC27.65■■■□□ 2.02
Retrieved 100 of 98,524 protein–RNA pairs in 50.4 ms