Protein–RNA interactions for Protein: A0A0B4J280

TRAV40, T-cell receptor alpha variable 40 (Fragment), humanhuman

Predictions only

Length 105 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV40A0A0B4J280 AC009299.2-201ENST00000482477 511 ntBASIC19.63■□□□□ 0.73
TRAV40A0A0B4J280 TRIR-205ENST00000592273 783 ntTSL 3 BASIC19.63■□□□□ 0.73
TRAV40A0A0B4J280 KRT18P10-201ENST00000388836 1287 ntBASIC19.62■□□□□ 0.73
TRAV40A0A0B4J280 SSX2IP-209ENST00000603677 1149 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
TRAV40A0A0B4J280 TSPAN10-204ENST00000611590 1068 ntAPPRIS ALT2 TSL 1 (best) BASIC19.62■□□□□ 0.73
TRAV40A0A0B4J280 TTC3-225ENST00000540756 2025 ntTSL 2 BASIC19.62■□□□□ 0.73
TRAV40A0A0B4J280 ANKRD16-202ENST00000380092 1646 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
TRAV40A0A0B4J280 EPB41L4B-202ENST00000374566 5800 ntAPPRIS P4 TSL 1 (best) BASIC19.61■□□□□ 0.73
TRAV40A0A0B4J280 CDCA5-202ENST00000404147 1012 ntTSL 2 BASIC19.61■□□□□ 0.73
TRAV40A0A0B4J280 CT47A7-201ENST00000434883 1288 ntAPPRIS P1 TSL 2 BASIC19.61■□□□□ 0.73
TRAV40A0A0B4J280 AL031848.2-201ENST00000607670 837 ntBASIC19.61■□□□□ 0.73
TRAV40A0A0B4J280 FAM66E-202ENST00000533615 2087 ntTSL 2 BASIC19.61■□□□□ 0.73
TRAV40A0A0B4J280 TMEM55B-201ENST00000250489 1961 ntAPPRIS P3 TSL 1 (best) BASIC19.61■□□□□ 0.73
TRAV40A0A0B4J280 PPP1R3F-205ENST00000495799 1537 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
TRAV40A0A0B4J280 IRAK1-205ENST00000429936 2127 ntTSL 5 BASIC19.6■□□□□ 0.73
TRAV40A0A0B4J280 C11orf80-210ENST00000527634 1666 ntAPPRIS ALT2 TSL 5 BASIC19.6■□□□□ 0.73
TRAV40A0A0B4J280 AC103724.3-201ENST00000564481 992 ntBASIC19.6■□□□□ 0.73
TRAV40A0A0B4J280 OXLD1-203ENST00000571503 803 ntTSL 2 BASIC19.6■□□□□ 0.73
TRAV40A0A0B4J280 AC019171.1-201ENST00000601251 1056 ntBASIC19.6■□□□□ 0.73
TRAV40A0A0B4J280 MTERF3-204ENST00000523821 1529 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
TRAV40A0A0B4J280 LTB4R-202ENST00000396782 1627 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
TRAV40A0A0B4J280 KLHDC9-203ENST00000392192 1333 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
TRAV40A0A0B4J280 LONRF2P2-201ENST00000439212 571 ntBASIC19.59■□□□□ 0.73
TRAV40A0A0B4J280 RAET1E-AS1-203ENST00000606915 1210 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
TRAV40A0A0B4J280 AL590094.1-201ENST00000635581 706 ntTSL 2 BASIC19.59■□□□□ 0.73
TRAV40A0A0B4J280 UNCX-201ENST00000316333 2048 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
TRAV40A0A0B4J280 PSMG1-201ENST00000331573 2154 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
TRAV40A0A0B4J280 FKBP1A-211ENST00000618612 1518 ntTSL 1 (best) BASIC19.58■□□□□ 0.73
TRAV40A0A0B4J280 EPM2A-202ENST00000435470 1278 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
TRAV40A0A0B4J280 CARMIL1-202ENST00000461945 1290 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
TRAV40A0A0B4J280 HDGFL1-201ENST00000510882 2174 ntAPPRIS P1 BASIC19.58■□□□□ 0.72
TRAV40A0A0B4J280 U2AF1-204ENST00000459639 1675 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
TRAV40A0A0B4J280 AP003068.2-202ENST00000526623 1662 ntTSL 2 BASIC19.58■□□□□ 0.72
TRAV40A0A0B4J280 EPM2A-208ENST00000618445 1694 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
TRAV40A0A0B4J280 U2AF1L5-204ENST00000623375 1675 ntTSL 1 (best) BASIC19.58■□□□□ 0.72
TRAV40A0A0B4J280 SOHLH1-202ENST00000425225 1411 ntAPPRIS ALT2 TSL 5 BASIC19.58■□□□□ 0.72
TRAV40A0A0B4J280 ZNF263-204ENST00000573578 1636 ntTSL 5 BASIC19.58■□□□□ 0.72
TRAV40A0A0B4J280 AMH-201ENST00000221496 1821 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
TRAV40A0A0B4J280 DGAT1-201ENST00000332324 1473 ntTSL 5 BASIC19.57■□□□□ 0.72
TRAV40A0A0B4J280 PNMT-201ENST00000269582 1253 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
TRAV40A0A0B4J280 EME2-205ENST00000568449 1234 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
TRAV40A0A0B4J280 NDEL1-219ENST00000585098 454 ntTSL 3 BASIC19.57■□□□□ 0.72
TRAV40A0A0B4J280 CTF1-202ENST00000395019 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC19.57■□□□□ 0.72
TRAV40A0A0B4J280 VAX1-202ENST00000369206 1723 ntAPPRIS P1 TSL 5 BASIC19.56■□□□□ 0.72
TRAV40A0A0B4J280 CRACR2B-201ENST00000450448 1663 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
TRAV40A0A0B4J280 RAB40C-201ENST00000248139 2699 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
TRAV40A0A0B4J280 CDK2AP1-201ENST00000261692 1625 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
TRAV40A0A0B4J280 HSPE1-201ENST00000233893 950 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
TRAV40A0A0B4J280 IGFBP3-202ENST00000381083 1050 ntAPPRIS ALT1 TSL 5 BASIC19.56■□□□□ 0.72
TRAV40A0A0B4J280 C5orf38-202ENST00000397835 681 ntAPPRIS ALT2 TSL 5 BASIC19.56■□□□□ 0.72
TRAV40A0A0B4J280 AL121906.1-201ENST00000606866 440 ntTSL 3 BASIC19.56■□□□□ 0.72
TRAV40A0A0B4J280 AC064853.4-201ENST00000641394 363 ntAPPRIS P1 BASIC19.56■□□□□ 0.72
TRAV40A0A0B4J280 NR6A1-203ENST00000416460 1898 ntAPPRIS ALT2 TSL 1 (best) BASIC19.56■□□□□ 0.72
TRAV40A0A0B4J280 ZNF775-201ENST00000329630 2257 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
TRAV40A0A0B4J280 NRM-201ENST00000259953 1755 ntAPPRIS P2 TSL 2 BASIC19.55■□□□□ 0.72
TRAV40A0A0B4J280 UBALD2-201ENST00000327490 1593 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
TRAV40A0A0B4J280 MED22-201ENST00000343730 1437 ntAPPRIS P4 TSL 1 (best) BASIC19.55■□□□□ 0.72
TRAV40A0A0B4J280 ADAMTS13-203ENST00000371910 1074 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
TRAV40A0A0B4J280 TMEM170A-202ENST00000561878 1072 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
TRAV40A0A0B4J280 AC009163.4-201ENST00000567194 530 ntAPPRIS P1 TSL 2 BASIC19.55■□□□□ 0.72
TRAV40A0A0B4J280 SH2B1-205ENST00000538342 1532 ntTSL 2 BASIC19.55■□□□□ 0.72
TRAV40A0A0B4J280 R3HCC1-201ENST00000265806 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC19.55■□□□□ 0.72
TRAV40A0A0B4J280 CLK2-203ENST00000368361 2166 ntAPPRIS ALT1 TSL 1 (best) BASIC19.54■□□□□ 0.72
TRAV40A0A0B4J280 LRP11-202ENST00000367368 1042 ntTSL 2 BASIC19.54■□□□□ 0.72
TRAV40A0A0B4J280 CDH24-206ENST00000610348 2037 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
TRAV40A0A0B4J280 SENP3-201ENST00000321337 2611 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
TRAV40A0A0B4J280 MLST8-219ENST00000565250 1588 ntAPPRIS P3 TSL 3 BASIC19.53■□□□□ 0.72
TRAV40A0A0B4J280 NDEL1-202ENST00000380025 2181 ntTSL 5 BASIC19.53■□□□□ 0.72
TRAV40A0A0B4J280 PIK3R2-207ENST00000617130 2187 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
TRAV40A0A0B4J280 AL022341.2-201ENST00000573609 1417 ntTSL 3 BASIC19.53■□□□□ 0.72
TRAV40A0A0B4J280 TMEM54-201ENST00000329151 871 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
TRAV40A0A0B4J280 FAM136A-202ENST00000430566 885 ntTSL 3 BASIC19.53■□□□□ 0.72
TRAV40A0A0B4J280 PRTG-204ENST00000561292 833 ntTSL 3 BASIC19.53■□□□□ 0.72
TRAV40A0A0B4J280 AC010913.1-201ENST00000608612 420 ntTSL 2 BASIC19.53■□□□□ 0.72
TRAV40A0A0B4J280 HECA-201ENST00000367658 5614 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
TRAV40A0A0B4J280 FAAH-201ENST00000243167 2094 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
TRAV40A0A0B4J280 CTU1-201ENST00000421832 2087 ntAPPRIS P1 TSL 2 BASIC19.52■□□□□ 0.72
TRAV40A0A0B4J280 MIF-201ENST00000215754 939 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
TRAV40A0A0B4J280 RFLNA-202ENST00000338359 652 ntAPPRIS P2 TSL 1 (best) BASIC19.52■□□□□ 0.72
TRAV40A0A0B4J280 RAB32-201ENST00000367495 1217 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
TRAV40A0A0B4J280 TMPO-AS1-201ENST00000546421 738 ntTSL 5 BASIC19.52■□□□□ 0.72
TRAV40A0A0B4J280 PKIG-206ENST00000372892 1338 ntAPPRIS P1 TSL 2 BASIC19.51■□□□□ 0.71
TRAV40A0A0B4J280 DACT2-202ENST00000366796 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC19.51■□□□□ 0.71
TRAV40A0A0B4J280 EVA1B-201ENST00000270824 1054 ntAPPRIS P1 TSL 2 BASIC19.51■□□□□ 0.71
TRAV40A0A0B4J280 BOD1-202ENST00000311086 1562 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
TRAV40A0A0B4J280 C19orf47-202ENST00000392035 2126 ntAPPRIS ALT2 TSL 1 (best) BASIC19.51■□□□□ 0.71
TRAV40A0A0B4J280 JMJD8-201ENST00000412368 2038 ntAPPRIS P2 TSL 1 (best) BASIC19.51■□□□□ 0.71
TRAV40A0A0B4J280 C15orf59-201ENST00000379822 1342 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
TRAV40A0A0B4J280 ZNF219-201ENST00000360947 3071 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
TRAV40A0A0B4J280 SLC25A6-201ENST00000381401 2062 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
TRAV40A0A0B4J280 ANAPC13-201ENST00000354910 1209 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
TRAV40A0A0B4J280 OSCAR-206ENST00000391760 629 ntTSL 2 BASIC19.5■□□□□ 0.71
TRAV40A0A0B4J280 MDK-203ENST00000395566 828 ntAPPRIS P2 TSL 1 (best) BASIC19.5■□□□□ 0.71
TRAV40A0A0B4J280 AC055876.1-201ENST00000430589 895 ntTSL 2 BASIC19.5■□□□□ 0.71
TRAV40A0A0B4J280 AL160276.1-201ENST00000636672 1312 ntAPPRIS P1 TSL 5 BASIC19.5■□□□□ 0.71
TRAV40A0A0B4J280 CHKA-202ENST00000356135 1755 ntAPPRIS ALT2 TSL 1 (best) BASIC19.49■□□□□ 0.71
TRAV40A0A0B4J280 RNF146-205ENST00000477776 762 ntTSL 3 BASIC19.49■□□□□ 0.71
TRAV40A0A0B4J280 TIE1-210ENST00000538015 1140 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
TRAV40A0A0B4J280 TK2-216ENST00000564917 1156 ntTSL 3 BASIC19.49■□□□□ 0.71
TRAV40A0A0B4J280 CASP9-202ENST00000348549 1621 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
Retrieved 100 of 98,524 protein–RNA pairs in 71.3 ms