Protein–RNA interactions for Protein: Q92900

UPF1, Regulator of nonsense transcripts 1, humanhuman

Known RBP eCLIP

Length 1,129 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1Q92900 NCAPD2-210ENST00000541399 584 ntTSL 59.02□□□□□ -0.971e-32■□□□□ 9.5
UPF1Q92900 SCARNA10-201ENST00000459255 330 ntBASIC6.5□□□□□ -1.371e-32■□□□□ 9.5
UPF1Q92900 AC006064.5-201ENST00000541782 248 ntBASIC5.19□□□□□ -1.581e-32■□□□□ 9.5
UPF1Q92900 LETMD1-222ENST00000550274 809 ntTSL 219.05■□□□□ 0.646e-9■□□□□ 9.5
UPF1Q92900 LETMD1-228ENST00000550929 1389 ntTSL 1 (best) BASIC13.34□□□□□ -0.276e-9■□□□□ 9.5
UPF1Q92900 CP-203ENST00000460674 2269 ntTSL 1 (best)10.21□□□□□ -0.781e-10■□□□□ 9.5
UPF1Q92900 CP-209ENST00000479771 1150 ntTSL 59.91□□□□□ -0.821e-10■□□□□ 9.5
UPF1Q92900 CP-210ENST00000481169 3411 ntTSL 26.89□□□□□ -1.311e-10■□□□□ 9.5
UPF1Q92900 CP-201ENST00000264613 4676 ntAPPRIS P1 TSL 1 (best) BASIC5.76□□□□□ -1.491e-10■□□□□ 9.5
UPF1Q92900 INAFM2-202ENST00000638170 3052 ntAPPRIS P1 BASIC20.6■□□□□ 0.896e-11■□□□□ 9.5
UPF1Q92900 TMOD3-208ENST00000560725 544 ntTSL 411.75□□□□□ -0.536e-11■□□□□ 9.5
UPF1Q92900 INAFM2-201ENST00000560415 594 ntTSL 210.17□□□□□ -0.786e-11■□□□□ 9.5
UPF1Q92900 AC006011.1-201ENST00000442758 349 ntBASIC5.26□□□□□ -1.576e-11■□□□□ 9.5
UPF1Q92900 EIF4EBP2-201ENST00000373218 7257 ntAPPRIS P1 TSL 1 (best) BASIC5.99□□□□□ -1.452e-6■□□□□ 9.5
UPF1Q92900 SEPT8-205ENST00000378701 1817 ntTSL 2 BASIC21.88■■□□□ 1.091e-7■□□□□ 9.4
UPF1Q92900 SEPT8-212ENST00000458488 1726 ntTSL 5 BASIC19.35■□□□□ 0.691e-7■□□□□ 9.4
UPF1Q92900 SEPT8-204ENST00000378699 2289 ntTSL 5 BASIC17.84■□□□□ 0.451e-7■□□□□ 9.4
UPF1Q92900 RPL13A-208ENST00000477613 796 ntTSL 524.69■■□□□ 1.544e-13■□□□□ 9.4
UPF1Q92900 RPL13A-201ENST00000391857 1181 ntAPPRIS P1 TSL 1 (best) BASIC22.96■■□□□ 1.274e-13■□□□□ 9.4
UPF1Q92900 RPL13A-214ENST00000624069 1122 ntTSL 1 (best)22.96■■□□□ 1.274e-13■□□□□ 9.4
UPF1Q92900 RPL13A-209ENST00000479992 850 ntTSL 321.79■■□□□ 1.084e-13■□□□□ 9.4
UPF1Q92900 RPL13A-202ENST00000467825 660 ntTSL 521.66■■□□□ 1.064e-13■□□□□ 9.4
UPF1Q92900 RPL13A-213ENST00000621674 1098 ntTSL 5 BASIC19.42■□□□□ 0.74e-13■□□□□ 9.4
UPF1Q92900 RPL13A-212ENST00000488946 2312 ntTSL 216.93■□□□□ 0.34e-13■□□□□ 9.4
UPF1Q92900 ARPP19-201ENST00000249822 5301 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.71e-6■□□□□ 9.4
UPF1Q92900 ARPP19-208ENST00000566423 5362 ntAPPRIS P1 TSL 1 (best) BASIC6.05□□□□□ -1.441e-6■□□□□ 9.4
UPF1Q92900 CLASP1-208ENST00000455322 5660 ntTSL 5 BASIC8.37□□□□□ -1.071e-6■□□□□ 9.4
UPF1Q92900 DNAJC9-202ENST00000453189 762 ntTSL 314.51□□□□□ -0.091e-6■□□□□ 9.4
UPF1Q92900 DNAJC9-203ENST00000469143 362 ntTSL 37.01□□□□□ -1.291e-6■□□□□ 9.4
UPF1Q92900 snoU2-30.2-201ENST00000362805 70 ntBASIC4.39□□□□□ -1.711e-323■□□□□ 9.4
UPF1Q92900 RAD23A-204ENST00000588329 1034 ntTSL 526.31■■□□□ 1.85e-8■□□□□ 9.4
UPF1Q92900 RAD23A-205ENST00000588826 832 ntTSL 519.5■□□□□ 0.715e-8■□□□□ 9.4
UPF1Q92900 SRGN-201ENST00000242465 1208 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.095e-8■□□□□ 9.4
UPF1Q92900 MGA-202ENST00000545763 11413 ntAPPRIS ALT2 TSL 5 BASIC3.98□□□□□ -1.775e-8■□□□□ 9.4
UPF1Q92900 MGA-207ENST00000566586 14439 ntAPPRIS ALT2 TSL 1 (best) BASIC3.96□□□□□ -1.785e-8■□□□□ 9.4
UPF1Q92900 MGA-211ENST00000570161 11859 ntAPPRIS P4 TSL 5 BASIC3.81□□□□□ -1.85e-8■□□□□ 9.4
UPF1Q92900 MGA-201ENST00000219905 12042 ntAPPRIS P4 TSL 5 BASIC3.8□□□□□ -1.85e-8■□□□□ 9.4
UPF1Q92900 RPA1-201ENST00000254719 4340 ntAPPRIS P1 TSL 1 (best) BASIC9.47□□□□□ -0.897e-10■□□□□ 9.4
UPF1Q92900 RPA1-207ENST00000574049 3849 ntTSL 58.58□□□□□ -1.047e-10■□□□□ 9.4
UPF1Q92900 CHAC1-205ENST00000617961 1498 ntAPPRIS P1 TSL 1 (best) BASIC23.98■■□□□ 1.432e-15■□□□□ 9.4
UPF1Q92900 CHAC1-202ENST00000446533 1849 ntTSL 1 (best) BASIC23.23■■□□□ 1.312e-15■□□□□ 9.4
UPF1Q92900 CHAC1-204ENST00000617768 1560 ntTSL 1 (best) BASIC22.31■■□□□ 1.162e-15■□□□□ 9.4
UPF1Q92900 CACUL1-206ENST00000493518 3217 ntTSL 1 (best)15.07■□□□□ 03e-8■□□□□ 9.4
UPF1Q92900 CACUL1-207ENST00000544392 1060 ntTSL 213.83□□□□□ -0.23e-8■□□□□ 9.4
UPF1Q92900 LINC02404-201ENST00000546710 1188 ntTSL 5 BASIC12.76□□□□□ -0.373e-8■□□□□ 9.4
UPF1Q92900 CACUL1-201ENST00000369151 11311 ntAPPRIS P1 TSL 1 (best) BASIC12.13□□□□□ -0.473e-8■□□□□ 9.4
UPF1Q92900 MRPS25-203ENST00000444840 1281 ntTSL 2 BASIC21.08■□□□□ 0.972e-9■□□□□ 9.4
UPF1Q92900 CTDSP1-203ENST00000431127 586 ntTSL 324.43■■□□□ 1.52e-6■□□□□ 9.4
UPF1Q92900 CTDSP1-202ENST00000428361 842 ntTSL 522.46■■□□□ 1.192e-6■□□□□ 9.4
UPF1Q92900 CTDSP1-208ENST00000482272 984 ntTSL 219.59■□□□□ 0.732e-6■□□□□ 9.4
UPF1Q92900 TMPO-204ENST00000393053 2374 ntTSL 1 (best) BASIC20.48■□□□□ 0.874e-19■□□□□ 9.4
UPF1Q92900 TMPO-203ENST00000343315 2465 ntTSL 5 BASIC18.9■□□□□ 0.624e-19■□□□□ 9.4
UPF1Q92900 SLC12A4-205ENST00000570616 406 ntTSL 331.36■■■□□ 2.612e-10■□□□□ 9.4
UPF1Q92900 IGLON5-201ENST00000270642 2606 ntAPPRIS P1 TSL 5 BASIC19.18■□□□□ 0.662e-11■□□□□ 9.4
UPF1Q92900 UBP1-202ENST00000283629 4148 ntAPPRIS P3 TSL 1 (best) BASIC18.3■□□□□ 0.523e-12■□□□□ 9.4
UPF1Q92900 UBP1-204ENST00000447368 3669 ntAPPRIS ALT1 TSL 2 BASIC12.24□□□□□ -0.453e-12■□□□□ 9.4
UPF1Q92900 UBP1-212ENST00000492136 7394 ntTSL 27.06□□□□□ -1.283e-12■□□□□ 9.4
UPF1Q92900 PNPLA2-204ENST00000529255 1301 ntTSL 1 (best)23.47■■□□□ 1.359e-9■□□□□ 9.4
UPF1Q92900 PNPLA2-202ENST00000525250 2726 ntTSL 220.59■□□□□ 0.899e-9■□□□□ 9.4
UPF1Q92900 PNPLA2-201ENST00000336615 2428 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.689e-9■□□□□ 9.4
UPF1Q92900 GPSM1-203ENST00000392944 1111 ntTSL 3 BASIC26.89■■□□□ 1.94e-11■□□□□ 9.4
UPF1Q92900 CDH1-213ENST00000612417 2068 ntTSL 5 BASIC16.61■□□□□ 0.255e-8■□□□□ 9.3
UPF1Q92900 VTI1B-204ENST00000554659 5351 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.212e-6■□□□□ 9.3
UPF1Q92900 MXD1-201ENST00000264444 5587 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.176e-14■□□□□ 9.3
UPF1Q92900 MXD1-206ENST00000540449 5580 ntTSL 1 (best) BASIC14.78□□□□□ -0.046e-14■□□□□ 9.3
UPF1Q92900 MXD1-205ENST00000465446 490 ntTSL 211.75□□□□□ -0.536e-14■□□□□ 9.3
UPF1Q92900 FAM171A1-201ENST00000378116 3952 ntAPPRIS P1 TSL 1 (best) BASIC9.41□□□□□ -0.92e-8■□□□□ 9.3
UPF1Q92900 PPIA-209ENST00000494484 2149 ntTSL 213.04□□□□□ -0.322e-6■□□□□ 9.3
UPF1Q92900 AC078845.1-202ENST00000435996 733 ntTSL 3 BASIC10.75□□□□□ -0.692e-6■□□□□ 9.3
UPF1Q92900 AC078845.1-201ENST00000445293 889 ntTSL 5 BASIC10.08□□□□□ -0.82e-6■□□□□ 9.3
UPF1Q92900 MLXIP-209ENST00000539861 1384 ntTSL 1 (best)17.21■□□□□ 0.357e-9■□□□□ 9.3
UPF1Q92900 MLXIP-207ENST00000538061 1078 ntTSL 313.13□□□□□ -0.317e-9■□□□□ 9.3
UPF1Q92900 MLXIP-203ENST00000377037 805 ntTSL 5 BASIC11.83□□□□□ -0.527e-9■□□□□ 9.3
UPF1Q92900 RASSF7-201ENST00000397582 1731 ntAPPRIS ALT2 TSL 2 BASIC36.71■■■■□ 3.479e-8■□□□□ 9.3
UPF1Q92900 RASSF7-203ENST00000414138 1679 ntTSL 331.85■■■□□ 2.699e-8■□□□□ 9.3
UPF1Q92900 RASSF7-202ENST00000397583 1928 ntAPPRIS P3 TSL 1 (best) BASIC31.35■■■□□ 2.619e-8■□□□□ 9.3
UPF1Q92900 AL355987.4-202ENST00000459985 1900 ntTSL 226.83■■□□□ 1.899e-8■□□□□ 9.3
UPF1Q92900 RASSF7-208ENST00000531112 810 ntTSL 326.58■■□□□ 1.859e-8■□□□□ 9.3
UPF1Q92900 RASSF7-205ENST00000454668 1450 ntAPPRIS ALT2 TSL 1 (best) BASIC25.37■■□□□ 1.659e-8■□□□□ 9.3
UPF1Q92900 RASSF7-204ENST00000431809 1745 ntAPPRIS ALT2 TSL 5 BASIC23.88■■□□□ 1.419e-8■□□□□ 9.3
UPF1Q92900 ELAC2-218ENST00000584650 2087 ntTSL 222.64■■□□□ 1.219e-8■□□□□ 9.3
UPF1Q92900 ELAC2-209ENST00000487229 2452 ntTSL 218.65■□□□□ 0.589e-8■□□□□ 9.3
UPF1Q92900 AL355987.4-201ENST00000415992 4244 ntTSL 2 BASIC18.31■□□□□ 0.529e-8■□□□□ 9.3
UPF1Q92900 ELAC2-203ENST00000426905 2671 ntTSL 2 BASIC18.05■□□□□ 0.489e-8■□□□□ 9.3
UPF1Q92900 AL355987.2-201ENST00000471502 561 ntTSL 4 BASIC17.53■□□□□ 0.49e-8■□□□□ 9.3
UPF1Q92900 CERS6-201ENST00000305747 7217 ntAPPRIS P3 TSL 2 BASIC17■□□□□ 0.317e-10■□□□□ 9.3
UPF1Q92900 ELAC2-207ENST00000480891 2737 ntTSL 216.7■□□□□ 0.269e-8■□□□□ 9.3
UPF1Q92900 ELAC2-202ENST00000395962 2924 ntTSL 2 BASIC16.65■□□□□ 0.269e-8■□□□□ 9.3
UPF1Q92900 ELAC2-201ENST00000338034 3148 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.179e-8■□□□□ 9.3
UPF1Q92900 ELAC2-205ENST00000465825 2793 ntTSL 215.58■□□□□ 0.089e-8■□□□□ 9.3
UPF1Q92900 CERS6-202ENST00000392687 6851 ntAPPRIS ALT1 TSL 1 (best) BASIC14.13□□□□□ -0.157e-10■□□□□ 9.3
UPF1Q92900 ELAC2-208ENST00000484122 3738 ntTSL 213.29□□□□□ -0.289e-8■□□□□ 9.3
UPF1Q92900 RNASE4-201ENST00000397995 853 ntAPPRIS P1 TSL 2 BASIC12.99□□□□□ -0.337e-10■□□□□ 9.3
UPF1Q92900 ANG-203ENST00000554073 251 ntTSL 34.37□□□□□ -1.717e-10■□□□□ 9.3
UPF1Q92900 CSNK1D-215ENST00000580784 1081 ntTSL 1 (best)30.82■■■□□ 2.523e-9■□□□□ 9.3
UPF1Q92900 CSNK1D-214ENST00000580565 566 ntTSL 425.73■■□□□ 1.713e-9■□□□□ 9.3
UPF1Q92900 SFPQ-207ENST00000471991 440 ntTSL 219.93■□□□□ 0.782e-13■□□□□ 9.3
UPF1Q92900 SFPQ-208ENST00000485365 693 ntTSL 212.8□□□□□ -0.362e-13■□□□□ 9.3
UPF1Q92900 SFPQ-203ENST00000466213 1431 ntTSL 1 (best)10.04□□□□□ -0.82e-13■□□□□ 9.3
UPF1Q92900 SFPQ-204ENST00000466745 662 ntTSL 29.3□□□□□ -0.922e-13■□□□□ 9.3
Retrieved 100 of 15,879 protein–RNA pairs in 275.7 ms