RNA–Protein interactions for RNA: ENST00000570616.1

SLC12A4-205, Transcript of solute carrier family 12 member 4, humanhuman

TSL 3

Gene SLC12A4, Length 406 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SLC12A4-205ENST00000570616 NISCHQ9Y2I1 1504 aa55.5■■■■■ 6.47
SLC12A4-205ENST00000570616 CCDC180Q9P1Z9 1646 aa49.31■■■■■ 5.48
SLC12A4-205ENST00000570616 ABCC9O60706 1549 aa48.22■■■■■ 5.31
SLC12A4-205ENST00000570616 RB1CC1Q8TDY2 1594 aa46.41■■■■■ 5.02
SLC12A4-205ENST00000570616 NACADO15069 1562 aa46.39■■■■■ 5.02
SLC12A4-205ENST00000570616 ZCCHC6Q5VYS8 1495 aaKnown RBP46.27■■■■■ 5
SLC12A4-205ENST00000570616 DCAF8L2P0C7V8 631 aa46.25■■■■■ 4.99
SLC12A4-205ENST00000570616 MYO15BQ96JP2 1530 aa46.18■■■■■ 4.98
SLC12A4-205ENST00000570616 DCAF1Q9Y4B6 1507 aa45.97■■■■■ 4.95
SLC12A4-205ENST00000570616 UNC13AQ9UPW8 1703 aa45.24■■■■■ 4.83
SLC12A4-205ENST00000570616 PABPN1Q86U42 306 aaKnown RBP eCLIP45.04■■■■■ 4.8
SLC12A4-205ENST00000570616 BICRAQ9NZM4 1560 aa44.99■■■■■ 4.79
SLC12A4-205ENST00000570616 SCRIBQ14160 1630 aa44.97■■■■■ 4.79
SLC12A4-205ENST00000570616 SHROOM4Q9ULL8 1493 aa44.63■■■■■ 4.73
SLC12A4-205ENST00000570616 DNAJC5BQ9UF47 199 aa44.21■■■■■ 4.67
SLC12A4-205ENST00000570616 EIF4G1Q04637 1599 aaKnown RBP43.82■■■■■ 4.61
SLC12A4-205ENST00000570616 CC2D2AQ9P2K1 1620 aa43.61■■■■■ 4.57
SLC12A4-205ENST00000570616 CECR2Q9BXF3 1484 aa43.34■■■■■ 4.53
SLC12A4-205ENST00000570616 SMARCA4P51532 1647 aa43.04■■■■■ 4.48
SLC12A4-205ENST00000570616 BAZ1AQ9NRL2 1556 aaPredicted RBP43.03■■■■■ 4.48
SLC12A4-205ENST00000570616 ATAD2BQ9ULI0 1458 aa42.83■■■■■ 4.45
SLC12A4-205ENST00000570616 NCAPD3P42695 1498 aa42.82■■■■■ 4.45
SLC12A4-205ENST00000570616 SMARCA2P51531 1590 aa42.78■■■■■ 4.44
SLC12A4-205ENST00000570616 MROH2BQ7Z745 1585 aa42.75■■■■■ 4.43
SLC12A4-205ENST00000570616 PEG3Q9GZU2 1588 aa42.67■■■■■ 4.42
SLC12A4-205ENST00000570616 HMGXB3Q12766 1538 aa42.61■■■■■ 4.41
SLC12A4-205ENST00000570616 BAZ1BQ9UIG0 1483 aaKnown RBP42.47■■■■■ 4.39
SLC12A4-205ENST00000570616 RSF1Q96T23 1441 aaPredicted RBP42.29■■■■■ 4.36
SLC12A4-205ENST00000570616 WIZO95785 1651 aa42.25■■■■■ 4.35
SLC12A4-205ENST00000570616 TOP2AP11388 1531 aaKnown RBP41.88■■■■■ 4.29
SLC12A4-205ENST00000570616 NESP48681 1621 aa41.72■■■■■ 4.27
SLC12A4-205ENST00000570616 LAMC3Q9Y6N6 1575 aa41.66■■■■■ 4.26
SLC12A4-205ENST00000570616 ERCC6Q03468 1493 aa41.58■■■■■ 4.25
SLC12A4-205ENST00000570616 CADPSQ9ULU8 1353 aa41.56■■■■■ 4.24
SLC12A4-205ENST00000570616 PDS5BQ9NTI5 1447 aa41.39■■■■■ 4.22
SLC12A4-205ENST00000570616 CCDC88BA6NC98 1476 aa41.36■■■■■ 4.21
SLC12A4-205ENST00000570616 CFTRP13569 1480 aa41.33■■■■■ 4.21
SLC12A4-205ENST00000570616 KIF21AQ7Z4S6 1674 aa41.18■■■■■ 4.18
SLC12A4-205ENST00000570616 CUX2O14529 1486 aa41.16■■■■■ 4.18
SLC12A4-205ENST00000570616 SUPT5HO00267 1087 aaKnown RBP41.16■■■■■ 4.18
SLC12A4-205ENST00000570616 THOC2Q8NI27 1593 aaKnown RBP41.12■■■■■ 4.17
SLC12A4-205ENST00000570616 FANCD2Q9BXW9 1451 aa41.08■■■■■ 4.17
SLC12A4-205ENST00000570616 CEP164Q9UPV0 1460 aa41.02■■■■■ 4.16
SLC12A4-205ENST00000570616 MRC2Q9UBG0 1479 aa40.97■■■■■ 4.15
SLC12A4-205ENST00000570616 PRDM2Q13029 1718 aa40.91■■■■■ 4.14
SLC12A4-205ENST00000570616 WDR62O43379 1518 aa40.84■■■■■ 4.13
SLC12A4-205ENST00000570616 URB2Q14146 1524 aaKnown RBP40.66■■■■■ 4.1
SLC12A4-205ENST00000570616 ABCC8Q09428 1581 aa40.43■■■■■ 4.06
SLC12A4-205ENST00000570616 TOPBP1Q92547 1522 aa40.42■■■■■ 4.06
SLC12A4-205ENST00000570616 DNMBPQ6XZF7 1577 aa40.37■■■■■ 4.05
SLC12A4-205ENST00000570616 IFT140Q96RY7 1462 aa40.18■■■■■ 4.02
SLC12A4-205ENST00000570616 CUX1P39880 1505 aa40.11■■■■■ 4.01
SLC12A4-205ENST00000570616 POLA1P09884 1462 aaPredicted RBP40.08■■■■■ 4.01
SLC12A4-205ENST00000570616 FGD5Q6ZNL6 1462 aa39.98■■■■□ 3.99
SLC12A4-205ENST00000570616 ZNF608Q9ULD9 1512 aaPredicted RBP39.96■■■■□ 3.99
SLC12A4-205ENST00000570616 TARBP1Q13395 1621 aaKnown RBP39.95■■■■□ 3.99
SLC12A4-205ENST00000570616 SOGA1O94964 1423 aa39.91■■■■□ 3.98
SLC12A4-205ENST00000570616 WRNQ14191 1432 aaPredicted RBP eCLIP39.89■■■■□ 3.98
SLC12A4-205ENST00000570616 RAD54L2Q9Y4B4 1467 aa39.88■■■■□ 3.97
SLC12A4-205ENST00000570616 DNAJC5Q9H3Z4 198 aa39.82■■■■□ 3.97
SLC12A4-205ENST00000570616 EIF4G3O43432 1585 aaKnown RBP39.8■■■■□ 3.96
SLC12A4-205ENST00000570616 TOP2BQ02880 1626 aa39.77■■■■□ 3.96
SLC12A4-205ENST00000570616 BIVM-ERCC5R4GMW8 1640 aa39.76■■■■□ 3.95
SLC12A4-205ENST00000570616 SYNJ1O43426 1573 aa39.75■■■■□ 3.95
SLC12A4-205ENST00000570616 AQRO60306 1485 aaKnown RBP eCLIP39.73■■■■□ 3.952e-9■■■■■ 41.6
SLC12A4-205ENST00000570616 WDR97A6NE52 1622 aa39.69■■■■□ 3.94
SLC12A4-205ENST00000570616 TDRD9Q8NDG6 1382 aaKnown RBP39.66■■■■□ 3.94
SLC12A4-205ENST00000570616 ABCA10Q8WWZ4 1543 aa39.62■■■■□ 3.93
SLC12A4-205ENST00000570616 GRIN2BQ13224 1484 aa39.46■■■■□ 3.91
SLC12A4-205ENST00000570616 GAPVD1Q14C86 1478 aa39.45■■■■□ 3.91
SLC12A4-205ENST00000570616 ABCA5Q8WWZ7 1642 aa39.43■■■■□ 3.9
SLC12A4-205ENST00000570616 OSCARQ8IYS5 282 aa39.41■■■■□ 3.9
SLC12A4-205ENST00000570616 SNAPC4Q5SXM2 1469 aa39.39■■■■□ 3.9
SLC12A4-205ENST00000570616 MAGI1Q96QZ7 1491 aaPredicted RBP39.37■■■■□ 3.89
SLC12A4-205ENST00000570616 PBRM1Q86U86 1689 aa39.3■■■■□ 3.88
SLC12A4-205ENST00000570616 CHD1O14646 1710 aa39.23■■■■□ 3.87
SLC12A4-205ENST00000570616 FBLN2P98095 1184 aa39.21■■■■□ 3.87
SLC12A4-205ENST00000570616 SYNJ2O15056 1496 aa39.2■■■■□ 3.87
SLC12A4-205ENST00000570616 ERICH3Q5RHP9 1530 aa39.14■■■■□ 3.86
SLC12A4-205ENST00000570616 CHMP7Q8WUX9 453 aaPredicted RBP39.14■■■■□ 3.86
SLC12A4-205ENST00000570616 ADAMTS12P58397 1594 aa39.07■■■■□ 3.84
SLC12A4-205ENST00000570616 KIF27Q86VH2 1401 aa39.06■■■■□ 3.84
SLC12A4-205ENST00000570616 FHAD1B1AJZ9 1412 aa39.02■■■■□ 3.84
SLC12A4-205ENST00000570616 GRIN2AQ12879 1464 aa38.95■■■■□ 3.83
SLC12A4-205ENST00000570616 CLASP1Q7Z460 1538 aa38.9■■■■□ 3.82
SLC12A4-205ENST00000570616 TRIM41Q8WV44 630 aa38.9■■■■□ 3.82
SLC12A4-205ENST00000570616 IGF1RP08069 1367 aa38.88■■■■□ 3.81
SLC12A4-205ENST00000570616 NUP160Q12769 1436 aa38.8■■■■□ 3.8
SLC12A4-205ENST00000570616 ARHGEF11O15085 1522 aa38.79■■■■□ 3.8
SLC12A4-205ENST00000570616 RIMBP3CA6NJZ7 1639 aa38.76■■■■□ 3.8
SLC12A4-205ENST00000570616 RIMBP3BA6NNM3 1639 aa38.76■■■■□ 3.8
SLC12A4-205ENST00000570616 CUL7Q14999 1698 aa38.76■■■■□ 3.8
SLC12A4-205ENST00000570616 RIMBP3Q9UFD9 1639 aa38.76■■■■□ 3.8
SLC12A4-205ENST00000570616 CEP170Q5SW79 1584 aa38.74■■■■□ 3.79
SLC12A4-205ENST00000570616 CARMIL1Q5VZK9 1371 aa38.65■■■■□ 3.78
SLC12A4-205ENST00000570616 RUSC2Q8N2Y8 1516 aa38.64■■■■□ 3.78
SLC12A4-205ENST00000570616 ARAP1Q96P48 1450 aa38.5■■■■□ 3.75
SLC12A4-205ENST00000570616 SHROOM2Q13796 1616 aa38.46■■■■□ 3.75
SLC12A4-205ENST00000570616 CHIC1Q5VXU3 224 aa38.45■■■■□ 3.75
SLC12A4-205ENST00000570616 RAPGEF2Q9Y4G8 1499 aa38.42■■■■□ 3.74
Retrieved 100 of 20,778 RNA–protein pairs in 18.2 ms