RNA–Protein interactions for RNA: ENST00000574049.1

RPA1-207, Transcript of replication protein A1, humanhuman

TSL 5

Gene RPA1, Length 3,849 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RPA1-207ENST00000574049 NISCHQ9Y2I1 1504 aa15.61■□□□□ 0.09
RPA1-207ENST00000574049 DCAF8L2P0C7V8 631 aa14.04□□□□□ -0.16
RPA1-207ENST00000574049 SHROOM4Q9ULL8 1493 aa13.56□□□□□ -0.24
RPA1-207ENST00000574049 ABCC9O60706 1549 aa13.34□□□□□ -0.27
RPA1-207ENST00000574049 CCDC180Q9P1Z9 1646 aa13.24□□□□□ -0.29
RPA1-207ENST00000574049 SUPT5HO00267 1087 aaKnown RBP13.16□□□□□ -0.3
RPA1-207ENST00000574049 CHIC1Q5VXU3 224 aa13.09□□□□□ -0.31
RPA1-207ENST00000574049 SLC24A1O60721 1099 aa13.03□□□□□ -0.32
RPA1-207ENST00000574049 ZCCHC6Q5VYS8 1495 aaKnown RBP13.02□□□□□ -0.33
RPA1-207ENST00000574049 EHMT2Q96KQ7 1210 aa12.95□□□□□ -0.34
RPA1-207ENST00000574049 PABPN1Q86U42 306 aaKnown RBP eCLIP12.86□□□□□ -0.35
RPA1-207ENST00000574049 SCRIBQ14160 1630 aa12.73□□□□□ -0.37
RPA1-207ENST00000574049 DCAF1Q9Y4B6 1507 aa12.57□□□□□ -0.4
RPA1-207ENST00000574049 NACADO15069 1562 aa12.57□□□□□ -0.4
RPA1-207ENST00000574049 RB1CC1Q8TDY2 1594 aa12.56□□□□□ -0.4
RPA1-207ENST00000574049 AEBP2Q6ZN18 517 aaPredicted RBP12.46□□□□□ -0.41
RPA1-207ENST00000574049 CECR2Q9BXF3 1484 aa12.37□□□□□ -0.43
RPA1-207ENST00000574049 MYO15BQ96JP2 1530 aa12.37□□□□□ -0.43
RPA1-207ENST00000574049 FAM9AQ8IZU1 332 aaPredicted RBP12.32□□□□□ -0.44
RPA1-207ENST00000574049 RSF1Q96T23 1441 aaPredicted RBP12.27□□□□□ -0.45
RPA1-207ENST00000574049 PCGF6Q9BYE7 350 aa12.26□□□□□ -0.45
RPA1-207ENST00000574049 PLPPR3Q6T4P5 718 aa12.24□□□□□ -0.45
RPA1-207ENST00000574049 TTBK1Q5TCY1 1321 aaPredicted RBP12.21□□□□□ -0.45
RPA1-207ENST00000574049 TRIM41Q8WV44 630 aa12.19□□□□□ -0.46
RPA1-207ENST00000574049 MROH2BQ7Z745 1585 aa12.18□□□□□ -0.46
RPA1-207ENST00000574049 BICRAQ9NZM4 1560 aa12.06□□□□□ -0.48
RPA1-207ENST00000574049 BAZ1AQ9NRL2 1556 aaPredicted RBP12.05□□□□□ -0.48
RPA1-207ENST00000574049 RTN4Q9NQC3 1192 aaKnown RBP12.04□□□□□ -0.48
RPA1-207ENST00000574049 WIZO95785 1651 aa12.04□□□□□ -0.48
RPA1-207ENST00000574049 UNC13AQ9UPW8 1703 aa12.03□□□□□ -0.48
RPA1-207ENST00000574049 RANGAP1P46060 587 aaPredicted RBP12.02□□□□□ -0.49
RPA1-207ENST00000574049 LOC105371045A0A1W2PR82 267 aa12.02□□□□□ -0.49
RPA1-207ENST00000574049 PPARGC1BQ86YN6 1023 aaKnown RBP12□□□□□ -0.49
RPA1-207ENST00000574049 BAZ1BQ9UIG0 1483 aaKnown RBP11.94□□□□□ -0.5
RPA1-207ENST00000574049 SMARCA4P51532 1647 aa11.94□□□□□ -0.5
RPA1-207ENST00000574049 ATAD2BQ9ULI0 1458 aa11.9□□□□□ -0.5
RPA1-207ENST00000574049 DNAJC5BQ9UF47 199 aa11.9□□□□□ -0.5
RPA1-207ENST00000574049 CCDC88BA6NC98 1476 aa11.88□□□□□ -0.51
RPA1-207ENST00000574049 PHF23Q9BUL5 403 aaPredicted RBP11.86□□□□□ -0.51
RPA1-207ENST00000574049 EIF4G1Q04637 1599 aaKnown RBP11.85□□□□□ -0.51
RPA1-207ENST00000574049 UBTFP17480 764 aaKnown RBP11.81□□□□□ -0.52
RPA1-207ENST00000574049 SMARCA2P51531 1590 aa11.79□□□□□ -0.52
RPA1-207ENST00000574049 TOP2AP11388 1531 aaKnown RBP11.79□□□□□ -0.52
RPA1-207ENST00000574049 PELP1Q8IZL8 1130 aaKnown RBP11.72□□□□□ -0.53
RPA1-207ENST00000574049 ABCC8Q09428 1581 aa11.72□□□□□ -0.53
RPA1-207ENST00000574049 CC2D2AQ9P2K1 1620 aa11.72□□□□□ -0.53
RPA1-207ENST00000574049 NCAPD3P42695 1498 aa11.7□□□□□ -0.54
RPA1-207ENST00000574049 KCNA4P22459 653 aa11.66□□□□□ -0.54
RPA1-207ENST00000574049 WRNQ14191 1432 aaPredicted RBP eCLIP11.65□□□□□ -0.54
RPA1-207ENST00000574049 CSRNP3Q8WYN3 585 aa11.64□□□□□ -0.55
RPA1-207ENST00000574049 YTHDC1Q96MU7 727 aaKnown RBP11.63□□□□□ -0.55
RPA1-207ENST00000574049 HRCP23327 699 aa11.63□□□□□ -0.55
RPA1-207ENST00000574049 PRKCSHP14314 528 aaPredicted RBP11.62□□□□□ -0.55
RPA1-207ENST00000574049 APLP2Q06481 763 aa11.62□□□□□ -0.55
RPA1-207ENST00000574049 CADPSQ9ULU8 1353 aa11.61□□□□□ -0.55
RPA1-207ENST00000574049 ATP1B4Q9UN42 357 aaPredicted RBP11.6□□□□□ -0.55
RPA1-207ENST00000574049 NESP48681 1621 aa11.6□□□□□ -0.55
RPA1-207ENST00000574049 SOGA1O94964 1423 aa11.59□□□□□ -0.55
RPA1-207ENST00000574049 CCER1Q8TC90 406 aaPredicted RBP11.58□□□□□ -0.56
RPA1-207ENST00000574049 FBLN2P98095 1184 aa11.54□□□□□ -0.56
RPA1-207ENST00000574049 PEG3Q9GZU2 1588 aa11.54□□□□□ -0.56
RPA1-207ENST00000574049 AMER1Q5JTC6 1135 aaPredicted RBP11.53□□□□□ -0.56
RPA1-207ENST00000574049 HMGXB3Q12766 1538 aa11.52□□□□□ -0.57
RPA1-207ENST00000574049 RUSC2Q8N2Y8 1516 aa11.52□□□□□ -0.57
RPA1-207ENST00000574049 P3H3Q8IVL6 736 aa11.5□□□□□ -0.57
RPA1-207ENST00000574049 ERCC6Q03468 1493 aa11.48□□□□□ -0.57
RPA1-207ENST00000574049 FANCD2Q9BXW9 1451 aa11.48□□□□□ -0.57
RPA1-207ENST00000574049 DAXXQ9UER7 740 aaPredicted RBP11.47□□□□□ -0.57
RPA1-207ENST00000574049 CFTRP13569 1480 aa11.46□□□□□ -0.57
RPA1-207ENST00000574049 PDS5BQ9NTI5 1447 aa11.44□□□□□ -0.58
RPA1-207ENST00000574049 TDRD9Q8NDG6 1382 aaKnown RBP11.44□□□□□ -0.58
RPA1-207ENST00000574049 NCBP3Q53F19 620 aaKnown RBP11.43□□□□□ -0.58
RPA1-207ENST00000574049 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP11.42□□□□□ -0.58
RPA1-207ENST00000574049 ITGAEP38570 1179 aa11.42□□□□□ -0.58
RPA1-207ENST00000574049 CUX2O14529 1486 aa11.41□□□□□ -0.58
RPA1-207ENST00000574049 SYNJ1O43426 1573 aa11.4□□□□□ -0.59
RPA1-207ENST00000574049 CEP164Q9UPV0 1460 aa11.39□□□□□ -0.59
RPA1-207ENST00000574049 RAD54L2Q9Y4B4 1467 aa11.38□□□□□ -0.59
RPA1-207ENST00000574049 ARID3CA6NKF2 412 aa11.38□□□□□ -0.59
RPA1-207ENST00000574049 TRIM26Q12899 539 aaPredicted RBP11.38□□□□□ -0.59
RPA1-207ENST00000574049 HNRNPUL2Q1KMD3 747 aaKnown RBP11.37□□□□□ -0.59
RPA1-207ENST00000574049 KIF27Q86VH2 1401 aa11.37□□□□□ -0.59
RPA1-207ENST00000574049 MYT1Q01538 1121 aa11.37□□□□□ -0.59
RPA1-207ENST00000574049 CUX1P39880 1505 aa11.34□□□□□ -0.59
RPA1-207ENST00000574049 FGD5Q6ZNL6 1462 aa11.34□□□□□ -0.59
RPA1-207ENST00000574049 CHMP7Q8WUX9 453 aaPredicted RBP11.31□□□□□ -0.6
RPA1-207ENST00000574049 CARMIL1Q5VZK9 1371 aa11.3□□□□□ -0.6
RPA1-207ENST00000574049 EEA1Q15075 1411 aa11.29□□□□□ -0.6
RPA1-207ENST00000574049 RAPGEF2Q9Y4G8 1499 aa11.28□□□□□ -0.6
RPA1-207ENST00000574049 GOLGA3Q08378 1498 aa11.28□□□□□ -0.6
RPA1-207ENST00000574049 CEP162Q5TB80 1403 aa11.28□□□□□ -0.6
RPA1-207ENST00000574049 TOPBP1Q92547 1522 aa11.26□□□□□ -0.61
RPA1-207ENST00000574049 CENPBP07199 599 aaPredicted RBP11.26□□□□□ -0.61
RPA1-207ENST00000574049 AQRO60306 1485 aaKnown RBP eCLIP11.25□□□□□ -0.612e-9■■■■■ 30.9
RPA1-207ENST00000574049 CLIP1P30622 1438 aa11.25□□□□□ -0.61
RPA1-207ENST00000574049 IGF1RP08069 1367 aa11.25□□□□□ -0.61
RPA1-207ENST00000574049 TNIKQ9UKE5 1360 aa11.24□□□□□ -0.61
RPA1-207ENST00000574049 POLA1P09884 1462 aaPredicted RBP11.24□□□□□ -0.61
RPA1-207ENST00000574049 CNGB1Q14028 1251 aaPredicted RBP11.23□□□□□ -0.61
RPA1-207ENST00000574049 SLC4A1APQ9BWU0 796 aaKnown RBP11.23□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms