RNA–Protein interactions for RNA: ENST00000554659.5

VTI1B-204, Transcript of vesicle transport through interaction with t-SNAREs 1B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VTI1B, Length 5,351 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VTI1B-204ENST00000554659 DCAF8L2P0C7V8 631 aa23.6■■□□□ 1.37
VTI1B-204ENST00000554659 NISCHQ9Y2I1 1504 aa22.94■■□□□ 1.26
VTI1B-204ENST00000554659 SUPT5HO00267 1087 aaKnown RBP22.82■■□□□ 1.24
VTI1B-204ENST00000554659 SHROOM4Q9ULL8 1493 aa22.33■■□□□ 1.17
VTI1B-204ENST00000554659 PELP1Q8IZL8 1130 aaKnown RBP22.28■■□□□ 1.16
VTI1B-204ENST00000554659 EHMT2Q96KQ7 1210 aa21.91■■□□□ 1.1
VTI1B-204ENST00000554659 APLP2Q06481 763 aa21.71■■□□□ 1.07
VTI1B-204ENST00000554659 PCGF6Q9BYE7 350 aa21.63■■□□□ 1.05
VTI1B-204ENST00000554659 ZEB1P37275 1124 aaPredicted RBP21.47■■□□□ 1.03
VTI1B-204ENST00000554659 FAM9AQ8IZU1 332 aaPredicted RBP21.47■■□□□ 1.03
VTI1B-204ENST00000554659 ERICH6Q7L0X2 663 aa21.46■■□□□ 1.03
VTI1B-204ENST00000554659 CENPBP07199 599 aaPredicted RBP21.39■■□□□ 1.02
VTI1B-204ENST00000554659 CCER1Q8TC90 406 aaPredicted RBP21.26■□□□□ 0.99
VTI1B-204ENST00000554659 TTBK1Q5TCY1 1321 aaPredicted RBP21.26■□□□□ 0.99
VTI1B-204ENST00000554659 TRIM41Q8WV44 630 aa21.19■□□□□ 0.98
VTI1B-204ENST00000554659 MYT1Q01538 1121 aa21.06■□□□□ 0.96
VTI1B-204ENST00000554659 RANGAP1P46060 587 aaPredicted RBP20.91■□□□□ 0.94
VTI1B-204ENST00000554659 UBTFP17480 764 aaKnown RBP20.86■□□□□ 0.93
VTI1B-204ENST00000554659 NEFLP07196 543 aa20.85■□□□□ 0.93
VTI1B-204ENST00000554659 YTHDC1Q96MU7 727 aaKnown RBP20.82■□□□□ 0.92
VTI1B-204ENST00000554659 TRIM26Q12899 539 aaPredicted RBP20.8■□□□□ 0.92
VTI1B-204ENST00000554659 HRCP23327 699 aa20.75■□□□□ 0.91
VTI1B-204ENST00000554659 ATP1B4Q9UN42 357 aaPredicted RBP20.72■□□□□ 0.91
VTI1B-204ENST00000554659 PPARGC1BQ86YN6 1023 aaKnown RBP20.54■□□□□ 0.88
VTI1B-204ENST00000554659 CHIC1Q5VXU3 224 aa20.45■□□□□ 0.86
VTI1B-204ENST00000554659 DAXXQ9UER7 740 aaPredicted RBP20.37■□□□□ 0.85
VTI1B-204ENST00000554659 LOC105371045A0A1W2PR82 267 aa20.35■□□□□ 0.85
VTI1B-204ENST00000554659 ITGAEP38570 1179 aa20.17■□□□□ 0.82
VTI1B-204ENST00000554659 HNRNPUL2Q1KMD3 747 aaKnown RBP20.17■□□□□ 0.82
VTI1B-204ENST00000554659 DIEXFQ68CQ4 756 aaKnown RBP20.09■□□□□ 0.81
VTI1B-204ENST00000554659 POLR3GLQ9BT43 218 aa20.06■□□□□ 0.8
VTI1B-204ENST00000554659 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP20.04■□□□□ 0.8
VTI1B-204ENST00000554659 RTL5Q5HYW3 569 aaPredicted RBP20.01■□□□□ 0.79
VTI1B-204ENST00000554659 CNGB1Q14028 1251 aaPredicted RBP19.95■□□□□ 0.78
VTI1B-204ENST00000554659 ZNF316A6NFI3 1004 aaPredicted RBP19.87■□□□□ 0.77
VTI1B-204ENST00000554659 CLSPNQ9HAW4 1339 aa19.8■□□□□ 0.76
VTI1B-204ENST00000554659 MYT1LQ9UL68 1186 aa19.78■□□□□ 0.76
VTI1B-204ENST00000554659 GTF3C3Q9Y5Q9 886 aa19.75■□□□□ 0.75
VTI1B-204ENST00000554659 FAM50AQ14320 339 aaKnown RBP19.71■□□□□ 0.74
VTI1B-204ENST00000554659 BCANQ96GW7 911 aa19.61■□□□□ 0.73
VTI1B-204ENST00000554659 ANP32CO43423 234 aa19.6■□□□□ 0.73
VTI1B-204ENST00000554659 SLC4A1APQ9BWU0 796 aaKnown RBP19.59■□□□□ 0.73
VTI1B-204ENST00000554659 NEUROD1Q13562 356 aa19.59■□□□□ 0.73
VTI1B-204ENST00000554659 TRIM52Q96A61 297 aa19.58■□□□□ 0.72
VTI1B-204ENST00000554659 ACIN1Q9UKV3 1341 aaKnown RBP19.54■□□□□ 0.72
VTI1B-204ENST00000554659 CDK11AQ9UQ88 783 aaPredicted RBP19.53■□□□□ 0.72
VTI1B-204ENST00000554659 ABCC9O60706 1549 aa19.37■□□□□ 0.69
VTI1B-204ENST00000554659 PABPN1Q86U42 306 aaKnown RBP eCLIP19.35■□□□□ 0.69
VTI1B-204ENST00000554659 CSRNP3Q8WYN3 585 aa19.35■□□□□ 0.69
VTI1B-204ENST00000554659 DCAF1Q9Y4B6 1507 aa19.34■□□□□ 0.69
VTI1B-204ENST00000554659 ZNF326Q5BKZ1 582 aaKnown RBP19.32■□□□□ 0.68
VTI1B-204ENST00000554659 ZBTB47Q9UFB7 747 aaPredicted RBP19.26■□□□□ 0.67
VTI1B-204ENST00000554659 EIF5BO60841 1220 aaKnown RBP19.23■□□□□ 0.67
VTI1B-204ENST00000554659 ANP32AP39687 249 aaKnown RBP19.21■□□□□ 0.67
VTI1B-204ENST00000554659 BCL11AQ9H165 835 aa19.18■□□□□ 0.66
VTI1B-204ENST00000554659 CANXP27824 592 aaKnown RBP19.15■□□□□ 0.66
VTI1B-204ENST00000554659 FKBP8Q14318 412 aa19.1■□□□□ 0.65
VTI1B-204ENST00000554659 NPM2Q86SE8 214 aaKnown RBP19.1■□□□□ 0.65
VTI1B-204ENST00000554659 P3H3Q8IVL6 736 aa19.08■□□□□ 0.65
VTI1B-204ENST00000554659 TONSLQ96HA7 1378 aa19.06■□□□□ 0.64
VTI1B-204ENST00000554659 ZCCHC6Q5VYS8 1495 aaKnown RBP19.05■□□□□ 0.64
VTI1B-204ENST00000554659 NEFMP07197 916 aa19.01■□□□□ 0.63
VTI1B-204ENST00000554659 FBLN2P98095 1184 aa18.98■□□□□ 0.63
VTI1B-204ENST00000554659 SLC24A1O60721 1099 aa18.98■□□□□ 0.63
VTI1B-204ENST00000554659 HNRNPUQ00839 825 aaKnown RBP eCLIP18.98■□□□□ 0.63
VTI1B-204ENST00000554659 ANP32BQ92688 251 aaKnown RBP18.96■□□□□ 0.63
VTI1B-204ENST00000554659 DDX10Q13206 875 aaKnown RBP18.95■□□□□ 0.62
VTI1B-204ENST00000554659 GLIPR1L2Q4G1C9 344 aa18.93■□□□□ 0.62
VTI1B-204ENST00000554659 ARID3CA6NKF2 412 aa18.92■□□□□ 0.62
VTI1B-204ENST00000554659 ZNF777Q9ULD5 760 aaPredicted RBP18.91■□□□□ 0.62
VTI1B-204ENST00000554659 SCRIBQ14160 1630 aa18.91■□□□□ 0.62
VTI1B-204ENST00000554659 SCAF1Q9H7N4 1312 aaKnown RBP18.89■□□□□ 0.61
VTI1B-204ENST00000554659 FAM9BQ8IZU0 186 aa18.87■□□□□ 0.61
VTI1B-204ENST00000554659 HSP90AA1P07900 732 aaKnown RBP18.86■□□□□ 0.61
VTI1B-204ENST00000554659 UPF2Q9HAU5 1272 aaKnown RBP18.82■□□□□ 0.6
VTI1B-204ENST00000554659 MIER1Q8N108 512 aa18.81■□□□□ 0.6
VTI1B-204ENST00000554659 CCDC136Q96JN2 1154 aa18.8■□□□□ 0.6
VTI1B-204ENST00000554659 NBR1Q14596 966 aa18.79■□□□□ 0.6
VTI1B-204ENST00000554659 TMC1Q8TDI8 760 aa18.76■□□□□ 0.59
VTI1B-204ENST00000554659 GOLGA6L2Q8N9W4 650 aaPredicted RBP18.73■□□□□ 0.59
VTI1B-204ENST00000554659 CLIP1P30622 1438 aa18.73■□□□□ 0.59
VTI1B-204ENST00000554659 MRS2Q9HD23 443 aa18.72■□□□□ 0.59
VTI1B-204ENST00000554659 ARXQ96QS3 562 aa18.72■□□□□ 0.59
VTI1B-204ENST00000554659 MYO15BQ96JP2 1530 aa18.7■□□□□ 0.58
VTI1B-204ENST00000554659 EEA1Q15075 1411 aa18.67■□□□□ 0.58
VTI1B-204ENST00000554659 CHIC2Q9UKJ5 165 aa18.67■□□□□ 0.58
VTI1B-204ENST00000554659 CCDC180Q9P1Z9 1646 aa18.66■□□□□ 0.58
VTI1B-204ENST00000554659 SALL2Q9Y467 1007 aaPredicted RBP18.66■□□□□ 0.58
VTI1B-204ENST00000554659 MTUS2Q5JR59 1369 aa18.64■□□□□ 0.57
VTI1B-204ENST00000554659 WDR43Q15061 677 aaKnown RBP eCLIP18.63■□□□□ 0.57
VTI1B-204ENST00000554659 GOLGA3Q08378 1498 aa18.62■□□□□ 0.57
VTI1B-204ENST00000554659 CEP162Q5TB80 1403 aa18.61■□□□□ 0.57
VTI1B-204ENST00000554659 EIF4G2P78344 907 aaKnown RBP eCLIP18.61■□□□□ 0.57
VTI1B-204ENST00000554659 CHGAP10645 457 aaKnown RBP18.59■□□□□ 0.57
VTI1B-204ENST00000554659 IRX6P78412 446 aaPredicted RBP18.57■□□□□ 0.56
VTI1B-204ENST00000554659 TSPY4P0CV99 314 aa18.55■□□□□ 0.56
VTI1B-204ENST00000554659 TSPY10P0CW01 314 aa18.55■□□□□ 0.56
VTI1B-204ENST00000554659 HIRIP3Q9BW71 556 aaPredicted RBP18.53■□□□□ 0.56
VTI1B-204ENST00000554659 RSF1Q96T23 1441 aaPredicted RBP18.51■□□□□ 0.55
VTI1B-204ENST00000554659 DDRGK1Q96HY6 314 aa18.51■□□□□ 0.55
Retrieved 100 of 20,778 RNA–protein pairs in 40.8 ms