RNA–Protein interactions for RNA: ENST00000254719.9

RPA1-201, Transcript of replication protein A1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene RPA1, Length 4,340 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RPA1-201ENST00000254719 NISCHQ9Y2I1 1504 aa20.28■□□□□ 0.84
RPA1-201ENST00000254719 CCDC180Q9P1Z9 1646 aa17.38■□□□□ 0.37
RPA1-201ENST00000254719 ZCCHC6Q5VYS8 1495 aaKnown RBP17.2■□□□□ 0.34
RPA1-201ENST00000254719 SHROOM4Q9ULL8 1493 aa16.8■□□□□ 0.28
RPA1-201ENST00000254719 DCAF1Q9Y4B6 1507 aa16.7■□□□□ 0.26
RPA1-201ENST00000254719 MYO15BQ96JP2 1530 aa16.39■□□□□ 0.21
RPA1-201ENST00000254719 ABCC9O60706 1549 aa16.23■□□□□ 0.19
RPA1-201ENST00000254719 SUPT5HO00267 1087 aaKnown RBP16.21■□□□□ 0.18
RPA1-201ENST00000254719 SCRIBQ14160 1630 aa16.12■□□□□ 0.17
RPA1-201ENST00000254719 CHIC1Q5VXU3 224 aa16.03■□□□□ 0.16
RPA1-201ENST00000254719 UNC13AQ9UPW8 1703 aa16.01■□□□□ 0.15
RPA1-201ENST00000254719 DCAF8L2P0C7V8 631 aa16■□□□□ 0.15
RPA1-201ENST00000254719 RSF1Q96T23 1441 aaPredicted RBP15.98■□□□□ 0.15
RPA1-201ENST00000254719 RB1CC1Q8TDY2 1594 aa15.91■□□□□ 0.14
RPA1-201ENST00000254719 CECR2Q9BXF3 1484 aa15.9■□□□□ 0.14
RPA1-201ENST00000254719 NACADO15069 1562 aa15.9■□□□□ 0.14
RPA1-201ENST00000254719 EIF4G1Q04637 1599 aaKnown RBP15.85■□□□□ 0.13
RPA1-201ENST00000254719 MROH2BQ7Z745 1585 aa15.84■□□□□ 0.13
RPA1-201ENST00000254719 WIZO95785 1651 aa15.8■□□□□ 0.12
RPA1-201ENST00000254719 BICRAQ9NZM4 1560 aa15.67■□□□□ 0.1
RPA1-201ENST00000254719 BAZ1AQ9NRL2 1556 aaPredicted RBP15.61■□□□□ 0.09
RPA1-201ENST00000254719 LOC105371045A0A1W2PR82 267 aa15.55■□□□□ 0.08
RPA1-201ENST00000254719 SMARCA4P51532 1647 aa15.51■□□□□ 0.07
RPA1-201ENST00000254719 SMARCA2P51531 1590 aa15.43■□□□□ 0.06
RPA1-201ENST00000254719 TOP2AP11388 1531 aaKnown RBP15.38■□□□□ 0.05
RPA1-201ENST00000254719 PEG3Q9GZU2 1588 aa15.37■□□□□ 0.05
RPA1-201ENST00000254719 CCDC88BA6NC98 1476 aa15.33■□□□□ 0.04
RPA1-201ENST00000254719 ABCC8Q09428 1581 aa15.3■□□□□ 0.04
RPA1-201ENST00000254719 HRCP23327 699 aa15.17■□□□□ 0.02
RPA1-201ENST00000254719 RUSC2Q8N2Y8 1516 aa15.14■□□□□ 0.01
RPA1-201ENST00000254719 PCGF6Q9BYE7 350 aa15.11■□□□□ 0.01
RPA1-201ENST00000254719 SYNJ1O43426 1573 aa15.08■□□□□ 0
RPA1-201ENST00000254719 PABPN1Q86U42 306 aaKnown RBP eCLIP15.06■□□□□ 0
RPA1-201ENST00000254719 PPARGC1BQ86YN6 1023 aaKnown RBP15.06■□□□□ 0
RPA1-201ENST00000254719 SOGA1O94964 1423 aa15.05■□□□□ -0
RPA1-201ENST00000254719 ATAD2BQ9ULI0 1458 aa15.05■□□□□ -0
RPA1-201ENST00000254719 TRIM41Q8WV44 630 aa15.04■□□□□ -0
RPA1-201ENST00000254719 FAM9AQ8IZU1 332 aaPredicted RBP14.92□□□□□ -0.02
RPA1-201ENST00000254719 BIVM-ERCC5R4GMW8 1640 aa14.87□□□□□ -0.03
RPA1-201ENST00000254719 TRIM26Q12899 539 aaPredicted RBP14.84□□□□□ -0.03
RPA1-201ENST00000254719 TOP2BQ02880 1626 aa14.82□□□□□ -0.04
RPA1-201ENST00000254719 WRNQ14191 1432 aaPredicted RBP eCLIP14.82□□□□□ -0.04
RPA1-201ENST00000254719 HMGXB3Q12766 1538 aa14.79□□□□□ -0.04
RPA1-201ENST00000254719 BAZ1BQ9UIG0 1483 aaKnown RBP14.78□□□□□ -0.04
RPA1-201ENST00000254719 KIF21BO75037 1637 aa14.78□□□□□ -0.04
RPA1-201ENST00000254719 PRDM2Q13029 1718 aa14.77□□□□□ -0.05
RPA1-201ENST00000254719 NCAPD3P42695 1498 aa14.76□□□□□ -0.05
RPA1-201ENST00000254719 EHMT2Q96KQ7 1210 aa14.76□□□□□ -0.05
RPA1-201ENST00000254719 CUX1P39880 1505 aa14.74□□□□□ -0.05
RPA1-201ENST00000254719 CEP162Q5TB80 1403 aa14.73□□□□□ -0.05
RPA1-201ENST00000254719 TNIKQ9UKE5 1360 aa14.69□□□□□ -0.06
RPA1-201ENST00000254719 RAPGEF2Q9Y4G8 1499 aa14.67□□□□□ -0.06
RPA1-201ENST00000254719 CFTRP13569 1480 aa14.64□□□□□ -0.07
RPA1-201ENST00000254719 EEA1Q15075 1411 aa14.6□□□□□ -0.07
RPA1-201ENST00000254719 PRXQ9BXM0 1461 aa14.6□□□□□ -0.07
RPA1-201ENST00000254719 CSRNP3Q8WYN3 585 aa14.57□□□□□ -0.08
RPA1-201ENST00000254719 GOLGA3Q08378 1498 aa14.57□□□□□ -0.08
RPA1-201ENST00000254719 CC2D2AQ9P2K1 1620 aa14.54□□□□□ -0.08
RPA1-201ENST00000254719 ARAP1Q96P48 1450 aa14.52□□□□□ -0.09
RPA1-201ENST00000254719 CEP164Q9UPV0 1460 aa14.5□□□□□ -0.09
RPA1-201ENST00000254719 CLIP1P30622 1438 aa14.49□□□□□ -0.09
RPA1-201ENST00000254719 ERICH3Q5RHP9 1530 aa14.49□□□□□ -0.09
RPA1-201ENST00000254719 WDR97A6NE52 1622 aa14.44□□□□□ -0.1
RPA1-201ENST00000254719 DNAJC5BQ9UF47 199 aa14.42□□□□□ -0.1
RPA1-201ENST00000254719 VPS8Q8N3P4 1428 aa14.39□□□□□ -0.11
RPA1-201ENST00000254719 LRRIQ1Q96JM4 1722 aa14.39□□□□□ -0.11
RPA1-201ENST00000254719 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.36□□□□□ -0.11
RPA1-201ENST00000254719 ARHGAP35Q9NRY4 1499 aa14.36□□□□□ -0.11
RPA1-201ENST00000254719 NESP48681 1621 aa14.36□□□□□ -0.11
RPA1-201ENST00000254719 IGF1RP08069 1367 aa14.32□□□□□ -0.12
RPA1-201ENST00000254719 CADPSQ9ULU8 1353 aa14.31□□□□□ -0.12
RPA1-201ENST00000254719 FGD5Q6ZNL6 1462 aa14.31□□□□□ -0.12
RPA1-201ENST00000254719 KANK4Q5T7N3 995 aaPredicted RBP14.26□□□□□ -0.13
RPA1-201ENST00000254719 KIF21AQ7Z4S6 1674 aa14.25□□□□□ -0.13
RPA1-201ENST00000254719 URB2Q14146 1524 aaKnown RBP14.24□□□□□ -0.13
RPA1-201ENST00000254719 ABCA5Q8WWZ7 1642 aa14.23□□□□□ -0.13
RPA1-201ENST00000254719 RAD54L2Q9Y4B4 1467 aa14.22□□□□□ -0.13
RPA1-201ENST00000254719 DNMBPQ6XZF7 1577 aa14.22□□□□□ -0.13
RPA1-201ENST00000254719 TTBK1Q5TCY1 1321 aaPredicted RBP14.22□□□□□ -0.13
RPA1-201ENST00000254719 POLA1P09884 1462 aaPredicted RBP14.22□□□□□ -0.13
RPA1-201ENST00000254719 TOPBP1Q92547 1522 aa14.21□□□□□ -0.13
RPA1-201ENST00000254719 UBTFP17480 764 aaKnown RBP14.21□□□□□ -0.14
RPA1-201ENST00000254719 FANCD2Q9BXW9 1451 aa14.2□□□□□ -0.14
RPA1-201ENST00000254719 CUX2O14529 1486 aa14.19□□□□□ -0.14
RPA1-201ENST00000254719 ABCA10Q8WWZ4 1543 aa14.19□□□□□ -0.14
RPA1-201ENST00000254719 TARBP1Q13395 1621 aaKnown RBP14.19□□□□□ -0.14
RPA1-201ENST00000254719 KIF27Q86VH2 1401 aa14.19□□□□□ -0.14
RPA1-201ENST00000254719 SCAF1Q9H7N4 1312 aaKnown RBP14.18□□□□□ -0.14
RPA1-201ENST00000254719 CFAP43Q8NDM7 1665 aa14.18□□□□□ -0.14
RPA1-201ENST00000254719 RRBP1Q9P2E9 1410 aaKnown RBP14.18□□□□□ -0.14
RPA1-201ENST00000254719 CTTNBP2Q8WZ74 1663 aa14.16□□□□□ -0.14
RPA1-201ENST00000254719 PCF11O94913 1555 aaKnown RBP14.14□□□□□ -0.15
RPA1-201ENST00000254719 TIAM1Q13009 1591 aa14.14□□□□□ -0.15
RPA1-201ENST00000254719 ZEB1P37275 1124 aaPredicted RBP14.13□□□□□ -0.15
RPA1-201ENST00000254719 LAMC3Q9Y6N6 1575 aa14.11□□□□□ -0.15
RPA1-201ENST00000254719 SAMD9Q5K651 1589 aa14.11□□□□□ -0.15
RPA1-201ENST00000254719 MAPKBP1O60336 1514 aa14.09□□□□□ -0.15
RPA1-201ENST00000254719 MAP3K1Q13233 1512 aa14.09□□□□□ -0.15
RPA1-201ENST00000254719 SNAPC4Q5SXM2 1469 aa14.09□□□□□ -0.15
RPA1-201ENST00000254719 DHX57Q6P158 1386 aaKnown RBP14.06□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms